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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 316 |
| AccBSI | CCGCTC | 1 cut(s) | 15 |
| AciI | CCGC | 4 cut(s) | 3, 15, 116, 175 |
| AclWI | GGATC | 1 cut(s) | 71 |
| AcsI | RAATTY | 1 cut(s) | 296 |
| AcuI | CTGAAG | 3 cut(s) | 79, 85, 154 |
| AfaI | GTAC | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 42, 105 |
| AgsI | TTSAA | 1 cut(s) | 94 |
| AjnI | CCWGG | 1 cut(s) | 35 |
| AluBI | AGCT | 3 cut(s) | 52, 69, 132 |
| AluI | AGCT | 3 cut(s) | 52, 69, 132 |
| Alw26I | GTCTC | 1 cut(s) | 230 |
| AlwI | GGATC | 1 cut(s) | 71 |
| AoxI | GGCC | 1 cut(s) | 193 |
| ApeKI | GCWGC | 2 cut(s) | 171, 199 |
| ApoI | RAATTY | 1 cut(s) | 296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 2 cut(s) | 193, 250 |
| AsuII | TTCGAA | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 250 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BbsI | GAAGAC | 1 cut(s) | 104 |
| BbvI | GCAGC | 2 cut(s) | 183, 186 |
| BciT130I | CCWGG | 1 cut(s) | 37 |
| BclI | TGATCA | 2 cut(s) | 204, 243 |
| BcoDI | GTCTC | 1 cut(s) | 230 |
| BisI | GCNGC | 4 cut(s) | 4, 172, 175, 200 |
| BlsI | GCNGC | 4 cut(s) | 5, 173, 176, 201 |
| Bme1390I | CCNGG | 1 cut(s) | 37 |
| Bme18I | GGWCC | 1 cut(s) | 250 |
| BmgT120I | GGNCC | 2 cut(s) | 193, 250 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 37 |
| BpiI | GAAGAC | 1 cut(s) | 104 |
| BpmI | CTGGAG | 3 cut(s) | 58, 91, 163 |
| Bpu14I | TTCGAA | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 119 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 264, 294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 42, 105 |
| Bse1I | ACTGG | 2 cut(s) | 146, 178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 266 |
| BseBI | CCWGG | 1 cut(s) | 37 |
| BseDI | CCNNGG | 1 cut(s) | 119 |
| BseJI | GATNNNNATC | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 42, 105 |
| BseNI | ACTGG | 2 cut(s) | 146, 178 |
| BseXI | GCAGC | 2 cut(s) | 183, 186 |
| BshFI | GGCC | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 42, 105 |
| BsmAI | GTCTC | 1 cut(s) | 230 |
| BsnI | GGCC | 1 cut(s) | 195 |
| Bsp119I | TTCGAA | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp143I | GATC | 3 cut(s) | 63, 204, 243 |
| BspACI | CCGC | 4 cut(s) | 3, 15, 116, 175 |
| BspANI | GGCC | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BspT104I | TTCGAA | 1 cut(s) | 293 |
| BsrBI | CCGCTC | 1 cut(s) | 15 |
| BsrI | ACTGG | 2 cut(s) | 146, 178 |
| BssECI | CCNNGG | 1 cut(s) | 119 |
| BssMI | GATC | 3 cut(s) | 63, 204, 243 |
| BssT1I | CCWWGG | 1 cut(s) | 119 |
| Bst2UI | CCWGG | 1 cut(s) | 37 |
| Bst4CI | ACNGT | 1 cut(s) | 241 |
| BstBI | TTCGAA | 1 cut(s) | 293 |
| BstC8I | GCNNGC | 3 cut(s) | 185, 197, 222 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 40 |
| BstKTI | GATC | 3 cut(s) | 66, 207, 246 |
| BstMAI | GTCTC | 1 cut(s) | 230 |
| BstMBI | GATC | 3 cut(s) | 63, 204, 243 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 12, 180 |
| BstNI | CCWGG | 1 cut(s) | 37 |
| BstSCI | CCNGG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 2 cut(s) | 183, 186 |
| BstV2I | GAAGAC | 1 cut(s) | 104 |
| BsuRI | GGCC | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 3 cut(s) | 109, 185, 246 |
| Cac8I | GCNNGC | 3 cut(s) | 185, 197, 222 |
| Cfr13I | GGNCC | 2 cut(s) | 193, 250 |
| Csp6I | GTAC | 1 cut(s) | 161 |
| CviAII | CATG | 3 cut(s) | 247, 304, 315 |
| CviJI | RGCY | 8 cut(s) | 52, 69, 125, 132, 153, 174, 195, 220 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 69, 125, 132, 153, 174, 195, 220 |
| CviQI | GTAC | 1 cut(s) | 161 |
| DpnI | GATC | 3 cut(s) | 65, 206, 245 |
| DpnII | GATC | 3 cut(s) | 63, 204, 243 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 316 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 316 |
| EciI | GGCGGA | 1 cut(s) | 105 |
| Eco130I | CCWWGG | 1 cut(s) | 119 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 250 |
| Eco57I | CTGAAG | 3 cut(s) | 79, 85, 154 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 40 |
| EcoO109I | RGGNCCY | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 35 |
| EcoT14I | CCWWGG | 1 cut(s) | 119 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 1 cut(s) | 119 |
| FaeI | CATG | 3 cut(s) | 250, 307, 318 |
| FaiI | YATR | 5 cut(s) | 30, 49, 248, 305, 316 |
| FatI | CATG | 3 cut(s) | 246, 303, 314 |
| FbaI | TGATCA | 2 cut(s) | 204, 243 |
| Fnu4HI | GCNGC | 4 cut(s) | 4, 172, 175, 200 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 4 cut(s) | 4, 172, 175, 200 |
| GluI | GCNGC | 4 cut(s) | 4, 172, 175, 200 |
| GsuI | CTGGAG | 3 cut(s) | 58, 91, 163 |
| HaeIII | GGCC | 1 cut(s) | 195 |
| Hin1II | CATG | 3 cut(s) | 250, 307, 318 |
| HinfI | GANTC | 3 cut(s) | 109, 262, 273 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 254, 272 |
| Hpy99I | CGWCG | 2 cut(s) | 168, 258 |
| HpyAV | CCTTC | 4 cut(s) | 54, 72, 81, 109 |
| HpyCH4III | ACNGT | 1 cut(s) | 241 |
| HpyCH4IV | ACGT | 2 cut(s) | 8, 163 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 12, 180 |
| HpySE526I | ACGT | 2 cut(s) | 8, 163 |
| Hsp92II | CATG | 3 cut(s) | 250, 307, 318 |
| Ksp22I | TGATCA | 2 cut(s) | 204, 243 |
| Kzo9I | GATC | 3 cut(s) | 63, 204, 243 |
| LmnI | GCTCC | 2 cut(s) | 39, 130 |
| Lsp1109I | GCAGC | 2 cut(s) | 183, 186 |
| MaeII | ACGT | 2 cut(s) | 8, 163 |
| MalI | GATC | 3 cut(s) | 65, 206, 245 |
| MbiI | CCGCTC | 1 cut(s) | 15 |
| MboI | GATC | 3 cut(s) | 63, 204, 243 |
| MboII | GAAGA | 4 cut(s) | 96, 104, 147, 271 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MluCI | AATT | 1 cut(s) | 296 |
| MlyI | GAGTC | 2 cut(s) | 118, 267 |
| MmeI | TCCRAC | 2 cut(s) | 277, 307 |
| MnlI | CCTC | 5 cut(s) | 66, 138, 161, 184, 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 1 cut(s) | 69 |
| MspR9I | CCNGG | 1 cut(s) | 37 |
| MvaI | CCWGG | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 12, 180 |
| NdeII | GATC | 3 cut(s) | 63, 204, 243 |
| NlaIII | CATG | 3 cut(s) | 250, 307, 318 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NspV | TTCGAA | 1 cut(s) | 293 |
| PdmI | GAANNNNTTC | 1 cut(s) | 98 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| PkrI | GCNGC | 4 cut(s) | 5, 173, 176, 201 |
| PleI | GAGTC | 2 cut(s) | 117, 267 |
| PpsI | GAGTC | 2 cut(s) | 117, 267 |
| Psp6I | CCWGG | 1 cut(s) | 35 |
| PspGI | CCWGG | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PspPI | GGNCC | 2 cut(s) | 193, 250 |
| PvuII | CAGCTG | 1 cut(s) | 69 |
| RsaI | GTAC | 1 cut(s) | 162 |
| RsaNI | GTAC | 1 cut(s) | 161 |
| SatI | GCNGC | 4 cut(s) | 4, 172, 175, 200 |
| Sau3AI | GATC | 3 cut(s) | 63, 204, 243 |
| Sau96I | GGNCC | 2 cut(s) | 193, 250 |
| SchI | GAGTC | 2 cut(s) | 118, 267 |
| ScrFI | CCNGG | 1 cut(s) | 37 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SetI | ASST | 8 cut(s) | 11, 54, 71, 92, 134, 166, 282, 331 |
| SfuI | TTCGAA | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 250 |
| Sse9I | AATT | 1 cut(s) | 296 |
| SsiI | CCGC | 4 cut(s) | 3, 15, 116, 175 |
| StyD4I | CCNGG | 1 cut(s) | 35 |
| StyI | CCWWGG | 1 cut(s) | 119 |
| TaaI | ACNGT | 1 cut(s) | 241 |
| TaiI | ACGT | 2 cut(s) | 11, 166 |
| TaqI | TCGA | 2 cut(s) | 166, 293 |
| TasI | AATT | 1 cut(s) | 296 |
| TauI | GCSGC | 2 cut(s) | 6, 177 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| TscAI | CASTG | 3 cut(s) | 109, 185, 246 |
| TseI | GCWGC | 2 cut(s) | 171, 199 |
| TspDTI | ATGAA | 1 cut(s) | 303 |
| TspGWI | ACGGA | 1 cut(s) | 271 |
| TspRI | CASTG | 3 cut(s) | 109, 185, 246 |
| VpaK11BI | GGWCC | 1 cut(s) | 250 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 40 |
| XapI | RAATTY | 1 cut(s) | 296 |
| XmnI | GAANNNNTTC | 1 cut(s) | 98 |