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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 322 |
| AccB1I | GGYRCC | 2 cut(s) | 359, 611 |
| AccBSI | CCGCTC | 1 cut(s) | 513 |
| AccII | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| AclWI | GGATC | 2 cut(s) | 171, 190 |
| AcoI | YGGCCR | 1 cut(s) | 348 |
| AcsI | RAATTY | 1 cut(s) | 580 |
| AcuI | CTGAAG | 2 cut(s) | 179, 185 |
| AcyI | GRCGYC | 3 cut(s) | 360, 545, 623 |
| AfaI | GTAC | 1 cut(s) | 59 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 286, 461, 689 |
| AgsI | TTSAA | 2 cut(s) | 310, 385 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 127 |
| AjnI | CCWGG | 2 cut(s) | 372, 663 |
| AleI | CACNNNNGTG | 1 cut(s) | 617 |
| AluBI | AGCT | 6 cut(s) | 22, 85, 136, 238, 452, 482 |
| AluI | AGCT | 6 cut(s) | 22, 85, 136, 238, 452, 482 |
| Alw26I | GTCTC | 2 cut(s) | 99, 574 |
| AlwI | GGATC | 2 cut(s) | 171, 190 |
| AoxI | GGCC | 3 cut(s) | 150, 288, 348 |
| ApeKI | GCWGC | 5 cut(s) | 65, 235, 293, 676, 704 |
| ApoI | RAATTY | 1 cut(s) | 580 |
| AspLEI | GCGC | 5 cut(s) | 362, 396, 398, 605, 712 |
| AsuHPI | GGTGA | 5 cut(s) | 260, 518, 527, 631, 704 |
| BanI | GGYRCC | 2 cut(s) | 359, 611 |
| BbvCI | CCTCAGC | 1 cut(s) | 483 |
| BbvI | GCAGC | 5 cut(s) | 52, 247, 280, 688, 691 |
| BccI | CCATC | 4 cut(s) | 104, 334, 602, 683 |
| BceAI | ACGGC | 1 cut(s) | 264 |
| BciT130I | CCWGG | 2 cut(s) | 374, 665 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BcoDI | GTCTC | 2 cut(s) | 99, 574 |
| BfoI | RGCGCY | 1 cut(s) | 363 |
| BfuAI | ACCTGC | 1 cut(s) | 322 |
| Bme1390I | CCNGG | 2 cut(s) | 374, 665 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 127 |
| BmiI | GGNNCC | 4 cut(s) | 278, 361, 471, 613 |
| BmrFI | CCNGG | 2 cut(s) | 374, 665 |
| BmrI | ACTGGG | 2 cut(s) | 415, 415 |
| BmsI | GCATC | 3 cut(s) | 61, 520, 580 |
| BmuI | ACTGGG | 2 cut(s) | 415, 415 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 436, 468 |
| BpmI | CTGGAG | 1 cut(s) | 158 |
| Bpu10I | CCTNAGC | 2 cut(s) | 483, 496 |
| BpuEI | CTTGAG | 1 cut(s) | 462 |
| BsaHI | GRCGYC | 3 cut(s) | 360, 545, 623 |
| BsaI | GGTCTC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 76, 225, 615 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 286, 461, 689 |
| Bse118I | RCCGGY | 2 cut(s) | 533, 682 |
| Bse1I | ACTGG | 3 cut(s) | 174, 410, 421 |
| BseBI | CCWGG | 2 cut(s) | 374, 665 |
| BseDI | CCNNGG | 4 cut(s) | 48, 76, 225, 615 |
| BseGI | GGATG | 4 cut(s) | 535, 595, 613, 694 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 286, 461, 689 |
| BseMII | CTCAG | 2 cut(s) | 183, 474 |
| BseNI | ACTGG | 3 cut(s) | 174, 410, 421 |
| BsePI | GCGCGC | 1 cut(s) | 394 |
| BseRI | GAGGAG | 2 cut(s) | 284, 289 |
| BseXI | GCAGC | 5 cut(s) | 52, 247, 280, 688, 691 |
| BseYI | CCCAGC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 1 cut(s) | 254 |
| Bsh1236I | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| BshFI | GGCC | 3 cut(s) | 152, 290, 350 |
| BshNI | GGYRCC | 2 cut(s) | 359, 611 |
| BsiSI | CCGG | 2 cut(s) | 534, 683 |
| BslFI | GGGAC | 2 cut(s) | 115, 403 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 286, 461, 689 |
| BsmAI | GTCTC | 2 cut(s) | 99, 574 |
| BsmFI | GGGAC | 2 cut(s) | 115, 403 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| BsnI | GGCC | 3 cut(s) | 152, 290, 350 |
| Bso31I | GGTCTC | 1 cut(s) | 99 |
| Bsp143I | GATC | 4 cut(s) | 163, 195, 517, 670 |
| Bsp19I | CCATGG | 1 cut(s) | 615 |
| BspANI | GGCC | 3 cut(s) | 152, 290, 350 |
| BspCNI | CTCAG | 2 cut(s) | 184, 475 |
| BspFNI | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| BspLI | GGNNCC | 4 cut(s) | 278, 361, 471, 613 |
| BspMI | ACCTGC | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 171, 190 |
| BspT107I | GGYRCC | 2 cut(s) | 359, 611 |
| BspTNI | GGTCTC | 1 cut(s) | 99 |
| BsrBI | CCGCTC | 1 cut(s) | 513 |
| BsrFI | RCCGGY | 2 cut(s) | 533, 682 |
| BsrI | ACTGG | 3 cut(s) | 174, 410, 421 |
| BssAI | RCCGGY | 2 cut(s) | 533, 682 |
| BssECI | CCNNGG | 4 cut(s) | 48, 76, 225, 615 |
| BssHII | GCGCGC | 1 cut(s) | 394 |
| BssMI | GATC | 4 cut(s) | 163, 195, 517, 670 |
| BssNI | GRCGYC | 3 cut(s) | 360, 545, 623 |
| BssT1I | CCWWGG | 2 cut(s) | 48, 615 |
| Bst2UI | CCWGG | 2 cut(s) | 374, 665 |
| Bst4CI | ACNGT | 4 cut(s) | 125, 381, 435, 637 |
| Bst6I | CTCTTC | 1 cut(s) | 261 |
| BstACI | GRCGYC | 3 cut(s) | 360, 545, 623 |
| BstC8I | GCNNGC | 4 cut(s) | 24, 76, 83, 396 |
| BstDEI | CTNAG | 3 cut(s) | 192, 483, 496 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 615 |
| BstF5I | GGATG | 4 cut(s) | 535, 595, 613, 694 |
| BstFNI | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| BstH2I | RGCGCY | 1 cut(s) | 363 |
| BstHHI | GCGC | 5 cut(s) | 362, 396, 398, 605, 712 |
| BstKTI | GATC | 4 cut(s) | 166, 198, 520, 673 |
| BstMAI | GTCTC | 2 cut(s) | 99, 574 |
| BstMBI | GATC | 4 cut(s) | 163, 195, 517, 670 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 302, 609 |
| BstNI | CCWGG | 2 cut(s) | 374, 665 |
| BstSCI | CCNGG | 2 cut(s) | 372, 663 |
| BstUI | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| BstV1I | GCAGC | 5 cut(s) | 52, 247, 280, 688, 691 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 373 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| BsuRI | GGCC | 3 cut(s) | 152, 290, 350 |
| BtgI | CCRYGG | 2 cut(s) | 76, 615 |
| BtgZI | GCGATG | 1 cut(s) | 82 |
| BtsCI | GGATG | 4 cut(s) | 535, 595, 613, 694 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| BveI | ACCTGC | 1 cut(s) | 322 |
| Cac8I | GCNNGC | 4 cut(s) | 24, 76, 83, 396 |
| CfoI | GCGC | 5 cut(s) | 362, 396, 398, 605, 712 |
| Cfr10I | RCCGGY | 2 cut(s) | 533, 682 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| CseI | GACGC | 2 cut(s) | 553, 631 |
| Csp6I | GTAC | 1 cut(s) | 58 |
| CviAII | CATG | 3 cut(s) | 148, 616, 641 |
| CviQI | GTAC | 1 cut(s) | 58 |
| DdeI | CTNAG | 3 cut(s) | 192, 483, 496 |
| DinI | GGCGCC | 1 cut(s) | 361 |
| DpnI | GATC | 4 cut(s) | 165, 197, 519, 672 |
| DpnII | GATC | 4 cut(s) | 163, 195, 517, 670 |
| DriI | GACNNNNNGTC | 1 cut(s) | 127 |
| EaeI | YGGCCR | 1 cut(s) | 348 |
| Eam1104I | CTCTTC | 1 cut(s) | 261 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 1 cut(s) | 261 |
| EciI | GGCGGA | 1 cut(s) | 542 |
| Eco130I | CCWWGG | 2 cut(s) | 48, 615 |
| Eco31I | GGTCTC | 1 cut(s) | 99 |
| Eco57I | CTGAAG | 2 cut(s) | 179, 185 |
| EcoRII | CCWGG | 2 cut(s) | 372, 663 |
| EcoT14I | CCWWGG | 2 cut(s) | 48, 615 |
| EgeI | GGCGCC | 1 cut(s) | 361 |
| EheI | GGCGCC | 1 cut(s) | 361 |
| ErhI | CCWWGG | 2 cut(s) | 48, 615 |
| FaeI | CATG | 3 cut(s) | 151, 619, 644 |
| FaiI | YATR | 5 cut(s) | 149, 327, 587, 617, 642 |
| FaqI | GGGAC | 2 cut(s) | 115, 403 |
| FatI | CATG | 3 cut(s) | 147, 615, 640 |
| FauI | CCCGC | 3 cut(s) | 83, 463, 608 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| FokI | GGATG | 4 cut(s) | 542, 602, 620, 701 |
| GlaI | GCGC | 5 cut(s) | 361, 395, 397, 604, 711 |
| GsaI | CCCAGC | 1 cut(s) | 136 |
| GsuI | CTGGAG | 1 cut(s) | 158 |
| HaeII | RGCGCY | 1 cut(s) | 363 |
| HaeIII | GGCC | 3 cut(s) | 152, 290, 350 |
| HapII | CCGG | 2 cut(s) | 534, 683 |
| HgaI | GACGC | 2 cut(s) | 553, 631 |
| HhaI | GCGC | 5 cut(s) | 362, 396, 398, 605, 712 |
| Hin1I | GRCGYC | 3 cut(s) | 360, 545, 623 |
| Hin1II | CATG | 3 cut(s) | 151, 619, 644 |
| Hin6I | GCGC | 5 cut(s) | 360, 394, 396, 603, 710 |
| HinP1I | GCGC | 5 cut(s) | 360, 394, 396, 603, 710 |
| HinfI | GANTC | 1 cut(s) | 215 |
| HpaII | CCGG | 2 cut(s) | 534, 683 |
| HphI | GGTGA | 5 cut(s) | 260, 518, 527, 631, 704 |
| Hpy188I | TCNGA | 4 cut(s) | 214, 229, 565, 649 |
| Hpy188III | TCNNGA | 1 cut(s) | 184 |
| HpyAV | CCTTC | 2 cut(s) | 154, 209 |
| HpyCH4III | ACNGT | 4 cut(s) | 125, 381, 435, 637 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 3 cut(s) | 235, 541, 578 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 302, 609 |
| HpyF3I | CTNAG | 3 cut(s) | 192, 483, 496 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Hsp92I | GRCGYC | 3 cut(s) | 360, 545, 623 |
| Hsp92II | CATG | 3 cut(s) | 151, 619, 644 |
| HspAI | GCGC | 5 cut(s) | 360, 394, 396, 603, 710 |
| KasI | GGCGCC | 1 cut(s) | 359 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| Kzo9I | GATC | 4 cut(s) | 163, 195, 517, 670 |
| LmnI | GCTCC | 3 cut(s) | 139, 276, 457 |
| Lsp1109I | GCAGC | 5 cut(s) | 52, 247, 280, 688, 691 |
| LweI | GCATC | 3 cut(s) | 61, 520, 580 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 619 |
| MalI | GATC | 4 cut(s) | 165, 197, 519, 672 |
| MbiI | CCGCTC | 1 cut(s) | 513 |
| MboI | GATC | 4 cut(s) | 163, 195, 517, 670 |
| MboII | GAAGA | 2 cut(s) | 278, 707 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MluCI | AATT | 1 cut(s) | 580 |
| Mly113I | GGCGCC | 1 cut(s) | 360 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 617 |
| MspA1I | CMGCKG | 5 cut(s) | 78, 136, 205, 238, 293 |
| MspI | CCGG | 2 cut(s) | 534, 683 |
| MspR9I | CCNGG | 2 cut(s) | 374, 665 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvaI | CCWGG | 2 cut(s) | 374, 665 |
| MvnI | CGCG | 6 cut(s) | 78, 396, 458, 603, 605, 710 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 302, 609 |
| NarI | GGCGCC | 1 cut(s) | 360 |
| NcoI | CCATGG | 1 cut(s) | 615 |
| NdeII | GATC | 4 cut(s) | 163, 195, 517, 670 |
| NlaIII | CATG | 3 cut(s) | 151, 619, 644 |
| NlaIV | GGNNCC | 4 cut(s) | 278, 361, 471, 613 |
| NmuCI | GTSAC | 1 cut(s) | 619 |
| OliI | CACNNNNGTG | 1 cut(s) | 617 |
| PauI | GCGCGC | 1 cut(s) | 394 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PluTI | GGCGCC | 1 cut(s) | 363 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| Psp6I | CCWGG | 2 cut(s) | 372, 663 |
| PspFI | CCCAGC | 1 cut(s) | 132 |
| PspGI | CCWGG | 2 cut(s) | 372, 663 |
| PspN4I | GGNNCC | 4 cut(s) | 278, 361, 471, 613 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PteI | GCGCGC | 1 cut(s) | 394 |
| PvuII | CAGCTG | 2 cut(s) | 136, 238 |
| RsaI | GTAC | 1 cut(s) | 59 |
| RsaNI | GTAC | 1 cut(s) | 58 |
| RseI | CAYNNNNRTG | 1 cut(s) | 617 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 411 |
| Sau3AI | GATC | 4 cut(s) | 163, 195, 517, 670 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 2 cut(s) | 374, 665 |
| SfaNI | GCATC | 3 cut(s) | 61, 520, 580 |
| SfoI | GGCGCC | 1 cut(s) | 361 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SgrAI | CRCCGGYG | 1 cut(s) | 682 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 617 |
| SmlI | CTYRAG | 1 cut(s) | 477 |
| SmoI | CTYRAG | 1 cut(s) | 477 |
| Sse9I | AATT | 1 cut(s) | 580 |
| SspDI | GGCGCC | 1 cut(s) | 359 |
| StyD4I | CCNGG | 2 cut(s) | 372, 663 |
| StyI | CCWWGG | 2 cut(s) | 48, 615 |
| TaaI | ACNGT | 4 cut(s) | 125, 381, 435, 637 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 2 cut(s) | 111, 669 |
| TasI | AATT | 1 cut(s) | 580 |
| TatI | WGTACW | 1 cut(s) | 57 |
| TauI | GCSGC | 7 cut(s) | 81, 176, 293, 350, 663, 682, 710 |
| Tru1I | TTAA | 1 cut(s) | 411 |
| Tru9I | TTAA | 1 cut(s) | 411 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TseFI | GTSAC | 1 cut(s) | 619 |
| TseI | GCWGC | 5 cut(s) | 65, 235, 293, 676, 704 |
| Tsp45I | GTSAC | 1 cut(s) | 619 |
| TspDTI | ATGAA | 1 cut(s) | 629 |
| TspRI | CASTG | 1 cut(s) | 130 |
| XapI | RAATTY | 1 cut(s) | 580 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 19, 370 |