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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 572 |
| Acc65I | GGTACC | 1 cut(s) | 159 |
| AccB1I | GGYRCC | 2 cut(s) | 159, 407 |
| AccBSI | CCGCTC | 4 cut(s) | 55, 82, 220, 590 |
| AccI | GTMKAC | 1 cut(s) | 329 |
| AcoI | YGGCCR | 1 cut(s) | 540 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 416 |
| AcyI | GRCGYC | 3 cut(s) | 299, 408, 428 |
| AfaI | GTAC | 2 cut(s) | 161, 565 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 417, 594 |
| AjnI | CCWGG | 1 cut(s) | 209 |
| AleI | CACNNNNGTG | 1 cut(s) | 554 |
| AluBI | AGCT | 5 cut(s) | 147, 226, 265, 391, 534 |
| AluI | AGCT | 5 cut(s) | 147, 226, 265, 391, 534 |
| Ama87I | CYCGRG | 1 cut(s) | 552 |
| AoxI | GGCC | 3 cut(s) | 150, 366, 540 |
| ApeKI | GCWGC | 2 cut(s) | 205, 391 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| Asp718I | GGTACC | 1 cut(s) | 159 |
| AspLEI | GCGC | 2 cut(s) | 117, 410 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| AsuNHI | GCTAGC | 1 cut(s) | 530 |
| AvaI | CYCGRG | 1 cut(s) | 552 |
| BanI | GGYRCC | 2 cut(s) | 159, 407 |
| BauI | CACGAG | 1 cut(s) | 591 |
| BbvCI | CCTCAGC | 1 cut(s) | 255 |
| BbvI | GCAGC | 2 cut(s) | 217, 378 |
| BccI | CCATC | 1 cut(s) | 554 |
| BciT130I | CCWGG | 1 cut(s) | 211 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 142 |
| BfoI | RGCGCY | 1 cut(s) | 411 |
| BisI | GCNGC | 5 cut(s) | 83, 206, 297, 392, 543 |
| BlsI | GCNGC | 5 cut(s) | 84, 207, 298, 393, 544 |
| Bme1390I | CCNGG | 1 cut(s) | 211 |
| BmeT110I | CYCGRG | 1 cut(s) | 552 |
| BmiI | GGNNCC | 3 cut(s) | 48, 161, 409 |
| BmrFI | CCNGG | 1 cut(s) | 211 |
| BmrI | ACTGGG | 1 cut(s) | 427 |
| BmtI | GCTAGC | 1 cut(s) | 534 |
| BmuI | ACTGGG | 1 cut(s) | 427 |
| Bpu10I | CCTNAGC | 3 cut(s) | 51, 227, 255 |
| BsaHI | GRCGYC | 3 cut(s) | 299, 408, 428 |
| BsaJI | CCNNGG | 2 cut(s) | 209, 210 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 487, 517 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 417, 594 |
| Bse118I | RCCGGY | 1 cut(s) | 368 |
| Bse1I | ACTGG | 2 cut(s) | 422, 437 |
| BseBI | CCWGG | 1 cut(s) | 211 |
| BseDI | CCNNGG | 2 cut(s) | 209, 210 |
| BseGI | GGATG | 1 cut(s) | 565 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 417, 594 |
| BseMII | CTCAG | 7 cut(s) | 42, 241, 246, 266, 345, 503, 524 |
| BseNI | ACTGG | 2 cut(s) | 422, 437 |
| BseRI | GAGGAG | 2 cut(s) | 272, 275 |
| BseXI | GCAGC | 2 cut(s) | 217, 378 |
| BseYI | CCCAGC | 2 cut(s) | 85, 432 |
| BshFI | GGCC | 3 cut(s) | 152, 368, 542 |
| BshNI | GGYRCC | 2 cut(s) | 159, 407 |
| BsiHKCI | CYCGRG | 1 cut(s) | 552 |
| BsiSI | CCGG | 2 cut(s) | 369, 476 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 417, 594 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| BsnI | GGCC | 3 cut(s) | 152, 368, 542 |
| BsoBI | CYCGRG | 1 cut(s) | 552 |
| Bsp143I | GATC | 2 cut(s) | 130, 237 |
| BspANI | GGCC | 3 cut(s) | 152, 368, 542 |
| BspCNI | CTCAG | 7 cut(s) | 43, 240, 247, 267, 346, 502, 523 |
| BspLI | GGNNCC | 3 cut(s) | 48, 161, 409 |
| BspOI | GCTAGC | 1 cut(s) | 534 |
| BspT107I | GGYRCC | 2 cut(s) | 159, 407 |
| BsrBI | CCGCTC | 4 cut(s) | 55, 82, 220, 590 |
| BsrFI | RCCGGY | 1 cut(s) | 368 |
| BsrI | ACTGG | 2 cut(s) | 422, 437 |
| BssAI | RCCGGY | 1 cut(s) | 368 |
| BssECI | CCNNGG | 2 cut(s) | 209, 210 |
| BssMI | GATC | 2 cut(s) | 130, 237 |
| BssNI | GRCGYC | 3 cut(s) | 299, 408, 428 |
| BssSI | CACGAG | 1 cut(s) | 591 |
| Bst2BI | CACGAG | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 1 cut(s) | 310 |
| BstACI | GRCGYC | 3 cut(s) | 299, 408, 428 |
| BstC8I | GCNNGC | 3 cut(s) | 80, 267, 532 |
| BstDEI | CTNAG | 7 cut(s) | 51, 227, 255, 275, 354, 489, 510 |
| BstF5I | GGATG | 1 cut(s) | 565 |
| BstH2I | RGCGCY | 1 cut(s) | 411 |
| BstHHI | GCGC | 2 cut(s) | 117, 410 |
| BstKTI | GATC | 2 cut(s) | 133, 240 |
| BstMBI | GATC | 2 cut(s) | 130, 237 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 302, 397, 499 |
| BstNI | CCWGG | 1 cut(s) | 211 |
| BstSCI | CCNGG | 1 cut(s) | 209 |
| BstSFI | CTRYAG | 1 cut(s) | 142 |
| BstV1I | GCAGC | 2 cut(s) | 217, 378 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 440 |
| BsuRI | GGCC | 3 cut(s) | 152, 368, 542 |
| BtsCI | GGATG | 1 cut(s) | 565 |
| BtsIMutI | CAGTG | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 3 cut(s) | 80, 267, 532 |
| CfoI | GCGC | 2 cut(s) | 117, 410 |
| Cfr10I | RCCGGY | 1 cut(s) | 368 |
| CseI | GACGC | 3 cut(s) | 288, 417, 461 |
| Csp6I | GTAC | 2 cut(s) | 160, 564 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviQI | GTAC | 2 cut(s) | 160, 564 |
| DdeI | CTNAG | 7 cut(s) | 51, 227, 255, 275, 354, 489, 510 |
| DinI | GGCGCC | 1 cut(s) | 409 |
| DpnI | GATC | 2 cut(s) | 132, 239 |
| DpnII | GATC | 2 cut(s) | 130, 237 |
| EaeI | YGGCCR | 1 cut(s) | 540 |
| EciI | GGCGGA | 1 cut(s) | 494 |
| Eco57I | CTGAAG | 1 cut(s) | 416 |
| Eco88I | CYCGRG | 1 cut(s) | 552 |
| EcoRI | GAATTC | 1 cut(s) | 35 |
| EcoRII | CCWGG | 1 cut(s) | 209 |
| EgeI | GGCGCC | 1 cut(s) | 409 |
| EheI | GGCGCC | 1 cut(s) | 409 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 5 cut(s) | 28, 30, 180, 339, 572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 395, 427 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FatI | CATG | 1 cut(s) | 178 |
| FauI | CCCGC | 3 cut(s) | 48, 449, 507 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| FblI | GTMKAC | 1 cut(s) | 329 |
| Fnu4HI | GCNGC | 5 cut(s) | 83, 206, 297, 392, 543 |
| FokI | GGATG | 1 cut(s) | 572 |
| Fsp4HI | GCNGC | 5 cut(s) | 83, 206, 297, 392, 543 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GlaI | GCGC | 2 cut(s) | 116, 409 |
| GluI | GCNGC | 5 cut(s) | 83, 206, 297, 392, 543 |
| GsaI | CCCAGC | 2 cut(s) | 89, 436 |
| HaeII | RGCGCY | 1 cut(s) | 411 |
| HaeIII | GGCC | 3 cut(s) | 152, 368, 542 |
| HapII | CCGG | 2 cut(s) | 369, 476 |
| HgaI | GACGC | 3 cut(s) | 288, 417, 461 |
| HhaI | GCGC | 2 cut(s) | 117, 410 |
| Hin1I | GRCGYC | 3 cut(s) | 299, 408, 428 |
| Hin1II | CATG | 1 cut(s) | 182 |
| Hin6I | GCGC | 2 cut(s) | 115, 408 |
| HinP1I | GCGC | 2 cut(s) | 115, 408 |
| HincII | GTYRAC | 2 cut(s) | 330, 351 |
| HindII | GTYRAC | 2 cut(s) | 330, 351 |
| HinfI | GANTC | 5 cut(s) | 14, 108, 289, 485, 580 |
| HpaII | CCGG | 2 cut(s) | 369, 476 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy166II | GTNNAC | 2 cut(s) | 330, 351 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 276, 517, 601 |
| Hpy188III | TCNNGA | 1 cut(s) | 40 |
| Hpy8I | GTNNAC | 2 cut(s) | 330, 351 |
| Hpy99I | CGWCG | 1 cut(s) | 334 |
| HpyAV | CCTTC | 2 cut(s) | 97, 163 |
| HpyCH4III | ACNGT | 1 cut(s) | 310 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 302, 397, 499 |
| HpyF3I | CTNAG | 7 cut(s) | 51, 227, 255, 275, 354, 489, 510 |
| Hsp92I | GRCGYC | 3 cut(s) | 299, 408, 428 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| HspAI | GCGC | 2 cut(s) | 115, 408 |
| KasI | GGCGCC | 1 cut(s) | 407 |
| KpnI | GGTACC | 1 cut(s) | 163 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 2 cut(s) | 130, 237 |
| LmnI | GCTCC | 4 cut(s) | 46, 217, 262, 388 |
| Lsp1109I | GCAGC | 2 cut(s) | 217, 378 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 2 cut(s) | 132, 239 |
| MbiI | CCGCTC | 4 cut(s) | 55, 82, 220, 590 |
| MboI | GATC | 2 cut(s) | 130, 237 |
| MboII | GAAGA | 1 cut(s) | 58 |
| MluCI | AATT | 1 cut(s) | 35 |
| Mly113I | GGCGCC | 1 cut(s) | 408 |
| MlyI | GAGTC | 3 cut(s) | 8, 479, 589 |
| MseI | TTAA | 3 cut(s) | 200, 321, 604 |
| MslI | CAYNNNNRTG | 1 cut(s) | 554 |
| MspI | CCGG | 2 cut(s) | 369, 476 |
| MspR9I | CCNGG | 1 cut(s) | 211 |
| MvaI | CCWGG | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 302, 397, 499 |
| NarI | GGCGCC | 1 cut(s) | 408 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NdeII | GATC | 2 cut(s) | 130, 237 |
| NheI | GCTAGC | 1 cut(s) | 530 |
| NlaIII | CATG | 1 cut(s) | 182 |
| NlaIV | GGNNCC | 3 cut(s) | 48, 161, 409 |
| NmeAIII | GCCGAG | 2 cut(s) | 128, 603 |
| NmuCI | GTSAC | 1 cut(s) | 5 |
| OliI | CACNNNNGTG | 1 cut(s) | 554 |
| PasI | CCCWGGG | 1 cut(s) | 210 |
| PfeI | GAWTC | 2 cut(s) | 108, 289 |
| PflFI | GACNNNGTC | 1 cut(s) | 419 |
| PkrI | GCNGC | 5 cut(s) | 84, 207, 298, 393, 544 |
| PleI | GAGTC | 3 cut(s) | 8, 479, 588 |
| PluTI | GGCGCC | 1 cut(s) | 411 |
| PpsI | GAGTC | 3 cut(s) | 8, 479, 588 |
| PsiI | TTATAA | 1 cut(s) | 572 |
| Psp6I | CCWGG | 1 cut(s) | 209 |
| PspFI | CCCAGC | 2 cut(s) | 85, 432 |
| PspGI | CCWGG | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 3 cut(s) | 48, 161, 409 |
| PsyI | GACNNNGTC | 1 cut(s) | 419 |
| RsaI | GTAC | 2 cut(s) | 161, 565 |
| RsaNI | GTAC | 2 cut(s) | 160, 564 |
| RseI | CAYNNNNRTG | 1 cut(s) | 554 |
| SalI | GTCGAC | 1 cut(s) | 328 |
| SaqAI | TTAA | 3 cut(s) | 200, 321, 604 |
| SatI | GCNGC | 5 cut(s) | 83, 206, 297, 392, 543 |
| Sau3AI | GATC | 2 cut(s) | 130, 237 |
| SchI | GAGTC | 3 cut(s) | 8, 479, 589 |
| ScrFI | CCNGG | 1 cut(s) | 211 |
| SetI | ASST | 9 cut(s) | 12, 75, 149, 165, 228, 267, 360, 393, 536 |
| SfcI | CTRYAG | 1 cut(s) | 142 |
| SfoI | GGCGCC | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 554 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SspDI | GGCGCC | 1 cut(s) | 407 |
| SspMI | CTAG | 1 cut(s) | 531 |
| StyD4I | CCNGG | 1 cut(s) | 209 |
| TaaI | ACNGT | 1 cut(s) | 310 |
| TaqI | TCGA | 1 cut(s) | 329 |
| TasI | AATT | 1 cut(s) | 35 |
| TauI | GCSGC | 3 cut(s) | 85, 299, 545 |
| TfiI | GAWTC | 2 cut(s) | 108, 289 |
| Tru1I | TTAA | 3 cut(s) | 200, 321, 604 |
| Tru9I | TTAA | 3 cut(s) | 200, 321, 604 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseFI | GTSAC | 1 cut(s) | 5 |
| TseI | GCWGC | 2 cut(s) | 205, 391 |
| Tsp45I | GTSAC | 1 cut(s) | 5 |
| TspGWI | ACGGA | 3 cut(s) | 59, 157, 347 |
| TspRI | CASTG | 1 cut(s) | 313 |
| Tth111I | GACNNNGTC | 1 cut(s) | 419 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XmiI | GTMKAC | 1 cut(s) | 329 |
| XspI | CTAG | 1 cut(s) | 531 |