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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 288 |
| Acc36I | ACCTGC | 1 cut(s) | 459 |
| AccB1I | GGYRCC | 3 cut(s) | 401, 589, 1913 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 222, 1923 |
| AccBSI | CCGCTC | 4 cut(s) | 1342, 1480, 1633, 2124 |
| AccI | GTMKAC | 1 cut(s) | 1379 |
| AccII | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| AccIII | TCCGGA | 1 cut(s) | 39 |
| AclWI | GGATC | 3 cut(s) | 517, 888, 1689 |
| AcoI | YGGCCR | 1 cut(s) | 1689 |
| AcuI | CTGAAG | 6 cut(s) | 476, 584, 1109, 1703, 1809, 2178 |
| AcyI | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| AfaI | GTAC | 5 cut(s) | 761, 1261, 1374, 1826, 1984 |
| AflIII | ACRYGT | 1 cut(s) | 1665 |
| AgeI | ACCGGT | 1 cut(s) | 2144 |
| AgsI | TTSAA | 2 cut(s) | 905, 1712 |
| AjiI | CACGTC | 1 cut(s) | 1243 |
| AjnI | CCWGG | 3 cut(s) | 1269, 1530, 2002 |
| AleI | CACNNNNGTG | 1 cut(s) | 1118 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1305, 1337 |
| AluBI | AGCT | 7 cut(s) | 309, 490, 688, 1007, 1486, 1967, 2018 |
| AluI | AGCT | 7 cut(s) | 309, 490, 688, 1007, 1486, 1967, 2018 |
| Alw21I | GWGCWC | 5 cut(s) | 139, 247, 552, 1115, 1488 |
| Alw44I | GTGCAC | 2 cut(s) | 243, 548 |
| AlwI | GGATC | 3 cut(s) | 517, 888, 1689 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 864 |
| Ama87I | CYCGRG | 2 cut(s) | 1226, 2100 |
| Aor13HI | TCCGGA | 1 cut(s) | 39 |
| ApaI | GGGCCC | 1 cut(s) | 1192 |
| ApaLI | GTGCAC | 2 cut(s) | 243, 548 |
| ApeKI | GCWGC | 8 cut(s) | 278, 284, 326, 490, 965, 1435, 1802, 1900 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1123, 1155 |
| AsiGI | ACCGGT | 1 cut(s) | 2144 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1716 |
| AspLEI | GCGC | 7 cut(s) | 289, 682, 935, 1003, 1017, 1041, 1802 |
| AspS9I | GGNCC | 8 cut(s) | 917, 960, 1188, 1189, 1504, 1528, 2098, 2106 |
| AsuC2I | CCSGG | 3 cut(s) | 477, 1043, 2047 |
| AsuHPI | GGTGA | 6 cut(s) | 496, 982, 1048, 1322, 1778, 1962 |
| AvaI | CYCGRG | 2 cut(s) | 1226, 2100 |
| AvaII | GGWCC | 3 cut(s) | 917, 960, 2106 |
| AxyI | CCTNAGG | 1 cut(s) | 701 |
| BaeGI | GKGCMC | 4 cut(s) | 247, 552, 1192, 1422 |
| BanI | GGYRCC | 3 cut(s) | 401, 589, 1913 |
| BanII | GRGCYC | 3 cut(s) | 942, 1192, 1488 |
| BauI | CACGAG | 2 cut(s) | 551, 894 |
| BbsI | GAAGAC | 2 cut(s) | 132, 912 |
| Bbv12I | GWGCWC | 5 cut(s) | 139, 247, 552, 1115, 1488 |
| BbvCI | CCTCAGC | 1 cut(s) | 63 |
| BbvI | GCAGC | 8 cut(s) | 265, 271, 338, 477, 952, 1422, 1789, 1887 |
| BccI | CCATC | 4 cut(s) | 167, 496, 827, 1925 |
| BceAI | ACGGC | 7 cut(s) | 415, 428, 762, 1370, 1412, 1772, 1799 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1217, 1251, 1562, 1596 |
| BciT130I | CCWGG | 3 cut(s) | 1271, 1532, 2004 |
| BciVI | GTATCC | 1 cut(s) | 364 |
| BcnI | CCSGG | 3 cut(s) | 477, 1043, 2047 |
| BfaI | CTAG | 5 cut(s) | 51, 194, 264, 1472, 2019 |
| BfmI | CTRYAG | 2 cut(s) | 209, 1508 |
| BfoI | RGCGCY | 3 cut(s) | 683, 936, 1004 |
| BfuAI | ACCTGC | 1 cut(s) | 459 |
| BfuI | GTATCC | 1 cut(s) | 364 |
| BglII | AGATCT | 1 cut(s) | 603 |
| BlpI | GCTNAGC | 1 cut(s) | 936 |
| BmcAI | AGTACT | 1 cut(s) | 1984 |
| Bme1390I | CCNGG | 6 cut(s) | 477, 1043, 1271, 1532, 2004, 2047 |
| Bme18I | GGWCC | 3 cut(s) | 917, 960, 2106 |
| BmeT110I | CYCGRG | 2 cut(s) | 1226, 2100 |
| BmgBI | CACGTC | 1 cut(s) | 1243 |
| BmgT120I | GGNCC | 8 cut(s) | 917, 960, 1188, 1189, 1504, 1528, 2098, 2106 |
| BmrFI | CCNGG | 6 cut(s) | 477, 1043, 1271, 1532, 2004, 2047 |
| BmrI | ACTGGG | 3 cut(s) | 1194, 1933, 2070 |
| BmsI | GCATC | 5 cut(s) | 1159, 1570, 1867, 1929, 2143 |
| BmuI | ACTGGG | 3 cut(s) | 1194, 1933, 2070 |
| BoxI | GACNNNNGTC | 1 cut(s) | 896 |
| BpiI | GAAGAC | 2 cut(s) | 132, 912 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 503, 535, 564, 596, 2041, 2073 |
| BpmI | CTGGAG | 2 cut(s) | 363, 1781 |
| Bpu10I | CCTNAGC | 2 cut(s) | 63, 1487 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 936 |
| BpuMI | CCSGG | 3 cut(s) | 477, 1043, 2047 |
| BsaAI | YACGTR | 1 cut(s) | 90 |
| BsaHI | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| BsaWI | WCCGGW | 2 cut(s) | 39, 2144 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 776, 806, 1310, 1340, 1718, 1748 |
| Bse118I | RCCGGY | 2 cut(s) | 1942, 2144 |
| Bse1I | ACTGG | 4 cut(s) | 725, 1189, 1928, 2076 |
| Bse21I | CCTNAGG | 1 cut(s) | 701 |
| BseAI | TCCGGA | 1 cut(s) | 39 |
| BseBI | CCWGG | 3 cut(s) | 1271, 1532, 2004 |
| BseGI | GGATG | 4 cut(s) | 435, 819, 1174, 2128 |
| BseMII | CTCAG | 8 cut(s) | 54, 68, 676, 692, 927, 1501, 1772, 2072 |
| BseNI | ACTGG | 4 cut(s) | 725, 1189, 1928, 2076 |
| BseRI | GAGGAG | 3 cut(s) | 524, 1061, 1178 |
| BseSI | GKGCMC | 4 cut(s) | 247, 552, 1192, 1422 |
| BseXI | GCAGC | 8 cut(s) | 265, 271, 338, 477, 952, 1422, 1789, 1887 |
| BseYI | CCCAGC | 2 cut(s) | 864, 1106 |
| BsgI | GTGCAG | 2 cut(s) | 345, 1043 |
| Bsh1236I | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1379, 1947 |
| BshNI | GGYRCC | 3 cut(s) | 401, 589, 1913 |
| BshTI | ACCGGT | 1 cut(s) | 2144 |
| BsiEI | CGRYCG | 2 cut(s) | 1379, 1947 |
| BsiHKAI | GWGCWC | 5 cut(s) | 139, 247, 552, 1115, 1488 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1226, 2100 |
| BsiSI | CCGG | 9 cut(s) | 40, 110, 117, 477, 1043, 1152, 1943, 2047, 2145 |
| BslFI | GGGAC | 7 cut(s) | 239, 549, 973, 1529, 1637, 1654, 2073 |
| BsmFI | GGGAC | 7 cut(s) | 239, 549, 973, 1529, 1637, 1654, 2073 |
| BsoBI | CYCGRG | 2 cut(s) | 1226, 2100 |
| Bsp120I | GGGCCC | 1 cut(s) | 1188 |
| Bsp1286I | GDGCHC | 8 cut(s) | 139, 247, 552, 942, 1115, 1192, 1422, 1488 |
| Bsp13I | TCCGGA | 1 cut(s) | 39 |
| Bsp143I | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 936 |
| Bsp19I | CCATGG | 1 cut(s) | 1881 |
| BspCNI | CTCAG | 8 cut(s) | 55, 69, 675, 693, 928, 1500, 1773, 2073 |
| BspEI | TCCGGA | 1 cut(s) | 39 |
| BspFNI | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| BspMI | ACCTGC | 1 cut(s) | 459 |
| BspPI | GGATC | 3 cut(s) | 517, 888, 1689 |
| BspT107I | GGYRCC | 3 cut(s) | 401, 589, 1913 |
| BsrBI | CCGCTC | 4 cut(s) | 1342, 1480, 1633, 2124 |
| BsrFI | RCCGGY | 2 cut(s) | 1942, 2144 |
| BsrI | ACTGG | 4 cut(s) | 725, 1189, 1928, 2076 |
| BssAI | RCCGGY | 2 cut(s) | 1942, 2144 |
| BssMI | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| BssNI | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| BssSI | CACGAG | 2 cut(s) | 551, 894 |
| BssT1I | CCWWGG | 3 cut(s) | 673, 1173, 1881 |
| Bst2BI | CACGAG | 2 cut(s) | 551, 894 |
| Bst2UI | CCWGG | 3 cut(s) | 1271, 1532, 2004 |
| Bst4CI | ACNGT | 8 cut(s) | 222, 547, 911, 1036, 1102, 1310, 1377, 1644 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 1155 |
| BstACI | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| BstBAI | YACGTR | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 9 cut(s) | 331, 531, 931, 1005, 1115, 1218, 1504, 1777, 2139 |
| BstDSI | CCRYGG | 5 cut(s) | 221, 744, 1594, 1815, 1881 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 150 |
| BstF5I | GGATG | 4 cut(s) | 435, 819, 1174, 2128 |
| BstFNI | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| BstH2I | RGCGCY | 3 cut(s) | 683, 936, 1004 |
| BstHHI | GCGC | 7 cut(s) | 289, 682, 935, 1003, 1017, 1041, 1802 |
| BstKTI | GATC | 5 cut(s) | 525, 606, 693, 883, 1684 |
| BstMBI | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| BstMCI | CGRYCG | 2 cut(s) | 1379, 1947 |
| BstNI | CCWGG | 3 cut(s) | 1271, 1532, 2004 |
| BstNSI | RCATGY | 2 cut(s) | 542, 1669 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 896 |
| BstSCI | CCNGG | 6 cut(s) | 475, 1041, 1269, 1530, 2002, 2045 |
| BstSFI | CTRYAG | 2 cut(s) | 209, 1508 |
| BstSLI | GKGCMC | 4 cut(s) | 247, 552, 1192, 1422 |
| BstUI | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| BstV1I | GCAGC | 8 cut(s) | 265, 271, 338, 477, 952, 1422, 1789, 1887 |
| BstV2I | GAAGAC | 2 cut(s) | 132, 912 |
| BstX2I | RGATCY | 1 cut(s) | 603 |
| BstYI | RGATCY | 1 cut(s) | 603 |
| Bsu36I | CCTNAGG | 1 cut(s) | 701 |
| BsuI | GTATCC | 1 cut(s) | 364 |
| BtgI | CCRYGG | 5 cut(s) | 221, 744, 1594, 1815, 1881 |
| BtgZI | GCGATG | 1 cut(s) | 1408 |
| BtrI | CACGTC | 1 cut(s) | 1243 |
| BtsCI | GGATG | 4 cut(s) | 435, 819, 1174, 2128 |
| BtsI | GCAGTG | 1 cut(s) | 179 |
| BtsIMutI | CAGTG | 2 cut(s) | 179, 1853 |
| BveI | ACCTGC | 1 cut(s) | 459 |
| Cac8I | GCNNGC | 9 cut(s) | 331, 531, 931, 1005, 1115, 1218, 1504, 1777, 2139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 864 |
| CfoI | GCGC | 7 cut(s) | 289, 682, 935, 1003, 1017, 1041, 1802 |
| Cfr10I | RCCGGY | 2 cut(s) | 1942, 2144 |
| Cfr13I | GGNCC | 8 cut(s) | 917, 960, 1188, 1189, 1504, 1528, 2098, 2106 |
| CseI | GACGC | 9 cut(s) | 34, 239, 482, 935, 1446, 1566, 1598, 1722, 1923 |
| Csp6I | GTAC | 5 cut(s) | 760, 1260, 1373, 1825, 1983 |
| CspAI | ACCGGT | 1 cut(s) | 2144 |
| CviAII | CATG | 6 cut(s) | 539, 712, 850, 1439, 1666, 1882 |
| CviQI | GTAC | 5 cut(s) | 760, 1260, 1373, 1825, 1983 |
| DpnI | GATC | 5 cut(s) | 524, 605, 692, 882, 1683 |
| DpnII | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| EaeI | YGGCCR | 1 cut(s) | 1689 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 1155 |
| EarI | CTCTTC | 2 cut(s) | 297, 1155 |
| EciI | GGCGGA | 4 cut(s) | 1212, 1801, 2054, 2121 |
| Ecl136II | GAGCTC | 1 cut(s) | 1486 |
| Eco130I | CCWWGG | 3 cut(s) | 673, 1173, 1881 |
| Eco147I | AGGCCT | 2 cut(s) | 518, 1096 |
| Eco24I | GRGCYC | 3 cut(s) | 942, 1192, 1488 |
| Eco47I | GGWCC | 3 cut(s) | 917, 960, 2106 |
| Eco53kI | GAGCTC | 1 cut(s) | 1486 |
| Eco57I | CTGAAG | 6 cut(s) | 476, 584, 1109, 1703, 1809, 2178 |
| Eco81I | CCTNAGG | 1 cut(s) | 701 |
| Eco88I | CYCGRG | 2 cut(s) | 1226, 2100 |
| EcoICRI | GAGCTC | 1 cut(s) | 1486 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 150 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1188 |
| EcoRII | CCWGG | 3 cut(s) | 1269, 1530, 2002 |
| EcoT14I | CCWWGG | 3 cut(s) | 673, 1173, 1881 |
| EcoT38I | GRGCYC | 3 cut(s) | 942, 1192, 1488 |
| ErhI | CCWWGG | 3 cut(s) | 673, 1173, 1881 |
| FaeI | CATG | 6 cut(s) | 542, 715, 853, 1442, 1669, 1885 |
| FaqI | GGGAC | 7 cut(s) | 239, 549, 973, 1529, 1637, 1654, 2073 |
| FatI | CATG | 6 cut(s) | 538, 711, 849, 1438, 1665, 1881 |
| FblI | GTMKAC | 1 cut(s) | 1379 |
| FokI | GGATG | 4 cut(s) | 442, 806, 1181, 2115 |
| FriOI | GRGCYC | 3 cut(s) | 942, 1192, 1488 |
| FspBI | CTAG | 5 cut(s) | 51, 194, 264, 1472, 2019 |
| FspI | TGCGCA | 1 cut(s) | 288 |
| GlaI | GCGC | 7 cut(s) | 288, 681, 934, 1002, 1016, 1040, 1801 |
| GsaI | CCCAGC | 2 cut(s) | 868, 1110 |
| GsuI | CTGGAG | 2 cut(s) | 363, 1781 |
| HaeII | RGCGCY | 3 cut(s) | 683, 936, 1004 |
| HapII | CCGG | 9 cut(s) | 40, 110, 117, 477, 1043, 1152, 1943, 2047, 2145 |
| HgaI | GACGC | 9 cut(s) | 34, 239, 482, 935, 1446, 1566, 1598, 1722, 1923 |
| HhaI | GCGC | 7 cut(s) | 289, 682, 935, 1003, 1017, 1041, 1802 |
| Hin1I | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| Hin1II | CATG | 6 cut(s) | 542, 715, 853, 1442, 1669, 1885 |
| Hin6I | GCGC | 7 cut(s) | 287, 680, 933, 1001, 1015, 1039, 1800 |
| HinP1I | GCGC | 7 cut(s) | 287, 680, 933, 1001, 1015, 1039, 1800 |
| HincII | GTYRAC | 4 cut(s) | 448, 1142, 1380, 1390 |
| HindII | GTYRAC | 4 cut(s) | 448, 1142, 1380, 1390 |
| HindIII | AAGCTT | 1 cut(s) | 1965 |
| HpaI | GTTAAC | 1 cut(s) | 1390 |
| HpaII | CCGG | 9 cut(s) | 40, 110, 117, 477, 1043, 1152, 1943, 2047, 2145 |
| HphI | GGTGA | 6 cut(s) | 496, 982, 1048, 1322, 1778, 1962 |
| Hpy166II | GTNNAC | 9 cut(s) | 245, 448, 550, 658, 917, 1142, 1313, 1380, 1390 |
| Hpy188III | TCNNGA | 5 cut(s) | 40, 254, 694, 1451, 1737 |
| Hpy8I | GTNNAC | 9 cut(s) | 245, 448, 550, 658, 917, 1142, 1313, 1380, 1390 |
| Hpy99I | CGWCG | 8 cut(s) | 28, 105, 672, 793, 1084, 1106, 1560, 1939 |
| HpyCH4III | ACNGT | 8 cut(s) | 222, 547, 911, 1036, 1102, 1310, 1377, 1644 |
| HpyCH4IV | ACGT | 3 cut(s) | 89, 791, 1242 |
| HpyCH4V | TGCA | 8 cut(s) | 245, 326, 550, 645, 1024, 1303, 1438, 1903 |
| HpySE526I | ACGT | 3 cut(s) | 89, 791, 1242 |
| Hsp92I | GRCGYC | 4 cut(s) | 26, 1457, 1590, 1934 |
| Hsp92II | CATG | 6 cut(s) | 542, 715, 853, 1442, 1669, 1885 |
| HspAI | GCGC | 7 cut(s) | 287, 680, 933, 1001, 1015, 1039, 1800 |
| Kpn2I | TCCGGA | 1 cut(s) | 39 |
| KspAI | GTTAAC | 1 cut(s) | 1390 |
| Kzo9I | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| Lsp1109I | GCAGC | 8 cut(s) | 265, 271, 338, 477, 952, 1422, 1789, 1887 |
| LweI | GCATC | 5 cut(s) | 1159, 1570, 1867, 1929, 2143 |
| MaeI | CTAG | 5 cut(s) | 51, 194, 264, 1472, 2019 |
| MaeII | ACGT | 3 cut(s) | 89, 791, 1242 |
| MaeIII | GTNAC | 6 cut(s) | 13, 46, 574, 1054, 1180, 1193 |
| MalI | GATC | 5 cut(s) | 524, 605, 692, 882, 1683 |
| MbiI | CCGCTC | 4 cut(s) | 1342, 1480, 1633, 2124 |
| MboI | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| MboII | GAAGA | 7 cut(s) | 137, 314, 917, 1039, 1172, 1216, 1972 |
| MflI | RGATCY | 1 cut(s) | 603 |
| MhlI | GDGCHC | 8 cut(s) | 139, 247, 552, 942, 1115, 1192, 1422, 1488 |
| MluCI | AATT | 1 cut(s) | 798 |
| MmeI | TCCRAC | 5 cut(s) | 151, 786, 1050, 1635, 2133 |
| MroI | TCCGGA | 1 cut(s) | 39 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1716 |
| MseI | TTAA | 5 cut(s) | 35, 801, 1091, 1389, 1752 |
| MslI | CAYNNNNRTG | 3 cut(s) | 233, 1118, 1308 |
| MspA1I | CMGCKG | 9 cut(s) | 284, 333, 341, 533, 586, 844, 965, 1356, 1723 |
| MspI | CCGG | 9 cut(s) | 40, 110, 117, 477, 1043, 1152, 1943, 2047, 2145 |
| MspR9I | CCNGG | 6 cut(s) | 477, 1043, 1271, 1532, 2004, 2047 |
| MvaI | CCWGG | 3 cut(s) | 1271, 1532, 2004 |
| MvnI | CGCG | 5 cut(s) | 250, 567, 1017, 1117, 1800 |
| NciI | CCSGG | 3 cut(s) | 477, 1043, 2047 |
| NcoI | CCATGG | 1 cut(s) | 1881 |
| NdeII | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| NlaIII | CATG | 6 cut(s) | 542, 715, 853, 1442, 1669, 1885 |
| NmeAIII | GCCGAG | 1 cut(s) | 1771 |
| NmuCI | GTSAC | 3 cut(s) | 574, 1054, 1193 |
| NsbI | TGCGCA | 1 cut(s) | 288 |
| NspI | RCATGY | 2 cut(s) | 542, 1669 |
| OliI | CACNNNNGTG | 1 cut(s) | 1118 |
| PceI | AGGCCT | 2 cut(s) | 518, 1096 |
| PciI | ACATGT | 1 cut(s) | 1665 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 247 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1716 |
| PfeI | GAWTC | 1 cut(s) | 707 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 222, 1923 |
| PfoI | TCCNGGA | 1 cut(s) | 2045 |
| PinAI | ACCGGT | 1 cut(s) | 2144 |
| Ppu21I | YACGTR | 1 cut(s) | 90 |
| PscI | ACATGT | 1 cut(s) | 1665 |
| PshAI | GACNNNNGTC | 1 cut(s) | 896 |
| Psp124BI | GAGCTC | 1 cut(s) | 1488 |
| Psp6I | CCWGG | 3 cut(s) | 1269, 1530, 2002 |
| PspFI | CCCAGC | 2 cut(s) | 864, 1106 |
| PspGI | CCWGG | 3 cut(s) | 1269, 1530, 2002 |
| PspOMI | GGGCCC | 1 cut(s) | 1188 |
| PspPI | GGNCC | 8 cut(s) | 917, 960, 1188, 1189, 1504, 1528, 2098, 2106 |
| PstNI | CAGNNNCTG | 1 cut(s) | 864 |
| PsuI | RGATCY | 1 cut(s) | 603 |
| RsaI | GTAC | 5 cut(s) | 761, 1261, 1374, 1826, 1984 |
| RsaNI | GTAC | 5 cut(s) | 760, 1260, 1373, 1825, 1983 |
| RseI | CAYNNNNRTG | 3 cut(s) | 233, 1118, 1308 |
| SacI | GAGCTC | 1 cut(s) | 1488 |
| SalI | GTCGAC | 1 cut(s) | 1378 |
| SaqAI | TTAA | 5 cut(s) | 35, 801, 1091, 1389, 1752 |
| Sau3AI | GATC | 5 cut(s) | 522, 603, 690, 880, 1681 |
| Sau96I | GGNCC | 8 cut(s) | 917, 960, 1188, 1189, 1504, 1528, 2098, 2106 |
| ScaI | AGTACT | 1 cut(s) | 1984 |
| ScrFI | CCNGG | 6 cut(s) | 477, 1043, 1271, 1532, 2004, 2047 |
| SduI | GDGCHC | 8 cut(s) | 139, 247, 552, 942, 1115, 1192, 1422, 1488 |
| SfaNI | GCATC | 5 cut(s) | 1159, 1570, 1867, 1929, 2143 |
| SfcI | CTRYAG | 2 cut(s) | 209, 1508 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2144 |
| SinI | GGWCC | 3 cut(s) | 917, 960, 2106 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 233, 1118, 1308 |
| Sse9I | AATT | 1 cut(s) | 798 |
| SseBI | AGGCCT | 2 cut(s) | 518, 1096 |
| SspI | AATATT | 1 cut(s) | 72 |
| SspMI | CTAG | 5 cut(s) | 51, 194, 264, 1472, 2019 |
| SstI | GAGCTC | 1 cut(s) | 1488 |
| StuI | AGGCCT | 2 cut(s) | 518, 1096 |
| StyD4I | CCNGG | 6 cut(s) | 475, 1041, 1269, 1530, 2002, 2045 |
| StyI | CCWWGG | 3 cut(s) | 673, 1173, 1881 |
| TaaI | ACNGT | 8 cut(s) | 222, 547, 911, 1036, 1102, 1310, 1377, 1644 |
| TaiI | ACGT | 3 cut(s) | 92, 794, 1245 |
| TaqI | TCGA | 8 cut(s) | 123, 393, 521, 693, 1379, 1551, 1920, 1937 |
| TaqII | GACCGA | 1 cut(s) | 1874 |
| TasI | AATT | 1 cut(s) | 798 |
| TatI | WGTACW | 1 cut(s) | 1982 |
| TfiI | GAWTC | 1 cut(s) | 707 |
| Tru1I | TTAA | 5 cut(s) | 35, 801, 1091, 1389, 1752 |
| Tru9I | TTAA | 5 cut(s) | 35, 801, 1091, 1389, 1752 |
| TscAI | CASTG | 2 cut(s) | 186, 1860 |
| TseFI | GTSAC | 3 cut(s) | 574, 1054, 1193 |
| TseI | GCWGC | 8 cut(s) | 278, 284, 326, 490, 965, 1435, 1802, 1900 |
| Tsp45I | GTSAC | 3 cut(s) | 574, 1054, 1193 |
| TspDTI | ATGAA | 1 cut(s) | 1393 |
| TspGWI | ACGGA | 1 cut(s) | 118 |
| TspRI | CASTG | 2 cut(s) | 186, 1860 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 222, 1923 |
| VneI | GTGCAC | 2 cut(s) | 243, 548 |
| VpaK11BI | GGWCC | 3 cut(s) | 917, 960, 2106 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 150 |
| XceI | RCATGY | 2 cut(s) | 542, 1669 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1066, 1888 |
| XmiI | GTMKAC | 1 cut(s) | 1379 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1716 |
| XspI | CTAG | 5 cut(s) | 51, 194, 264, 1472, 2019 |
| ZrmI | AGTACT | 1 cut(s) | 1984 |