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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 53, 446, 482, 644 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 231, 492 |
| AccBSI | CCGCTC | 3 cut(s) | 85, 166, 638 |
| AccII | CGCG | 1 cut(s) | 207 |
| AclWI | GGATC | 2 cut(s) | 71, 84 |
| AcsI | RAATTY | 2 cut(s) | 65, 600 |
| AcuI | CTGAAG | 1 cut(s) | 272 |
| AcyI | GRCGYC | 3 cut(s) | 54, 483, 656 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 231, 259, 492, 545, 637, 722 |
| AgeI | ACCGGT | 1 cut(s) | 443 |
| AjnI | CCWGG | 2 cut(s) | 459, 673 |
| AleI | CACNNNNGTG | 1 cut(s) | 650 |
| AluBI | AGCT | 3 cut(s) | 319, 422, 466 |
| AluI | AGCT | 3 cut(s) | 319, 422, 466 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AlwI | GGATC | 2 cut(s) | 71, 84 |
| Ama87I | CYCGRG | 1 cut(s) | 633 |
| AoxI | GGCC | 4 cut(s) | 390, 518, 699, 777 |
| ApeKI | GCWGC | 4 cut(s) | 11, 118, 137, 740 |
| ApoI | RAATTY | 2 cut(s) | 65, 600 |
| AsiGI | ACCGGT | 1 cut(s) | 443 |
| AspLEI | GCGC | 3 cut(s) | 56, 485, 745 |
| AspS9I | GGNCC | 4 cut(s) | 235, 518, 536, 678 |
| AsuHPI | GGTGA | 6 cut(s) | 347, 508, 602, 620, 664, 737 |
| AvaI | CYCGRG | 1 cut(s) | 633 |
| AvaII | GGWCC | 3 cut(s) | 235, 536, 678 |
| BamHI | GGATCC | 1 cut(s) | 76 |
| BanI | GGYRCC | 4 cut(s) | 53, 446, 482, 644 |
| BanII | GRGCYC | 2 cut(s) | 665, 773 |
| BbvI | GCAGC | 3 cut(s) | 105, 149, 727 |
| BccI | CCATC | 4 cut(s) | 494, 529, 635, 716 |
| BceAI | ACGGC | 1 cut(s) | 684 |
| BciT130I | CCWGG | 2 cut(s) | 461, 675 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfaI | CTAG | 2 cut(s) | 18, 257 |
| BfoI | RGCGCY | 2 cut(s) | 57, 486 |
| Bme1390I | CCNGG | 2 cut(s) | 461, 675 |
| Bme18I | GGWCC | 3 cut(s) | 235, 536, 678 |
| BmeT110I | CYCGRG | 1 cut(s) | 633 |
| BmgT120I | GGNCC | 4 cut(s) | 235, 518, 536, 678 |
| BmrFI | CCNGG | 2 cut(s) | 461, 675 |
| BmsI | GCATC | 3 cut(s) | 112, 178, 190 |
| BpmI | CTGGAG | 1 cut(s) | 482 |
| Bpu10I | CCTNAGC | 1 cut(s) | 580 |
| BpuEI | CTTGAG | 1 cut(s) | 260 |
| Bsa29I | ATCGAT | 1 cut(s) | 489 |
| BsaHI | GRCGYC | 3 cut(s) | 54, 483, 656 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 4 cut(s) | 177, 205, 648, 674 |
| BsaWI | WCCGGW | 1 cut(s) | 443 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 231, 259, 492, 545, 637, 722 |
| Bse118I | RCCGGY | 1 cut(s) | 443 |
| BseBI | CCWGG | 2 cut(s) | 461, 675 |
| BseCI | ATCGAT | 1 cut(s) | 489 |
| BseDI | CCNNGG | 4 cut(s) | 177, 205, 648, 674 |
| BseGI | GGATG | 3 cut(s) | 205, 646, 727 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 231, 259, 492, 545, 637, 722 |
| BseMII | CTCAG | 4 cut(s) | 396, 420, 558, 594 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseXI | GCAGC | 3 cut(s) | 105, 149, 727 |
| Bsh1236I | CGCG | 1 cut(s) | 207 |
| BshFI | GGCC | 4 cut(s) | 392, 520, 701, 779 |
| BshNI | GGYRCC | 4 cut(s) | 53, 446, 482, 644 |
| BshTI | ACCGGT | 1 cut(s) | 443 |
| BshVI | ATCGAT | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 633 |
| BsiSI | CCGG | 1 cut(s) | 444 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 231, 259, 492, 545, 637, 722 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| BsnI | GGCC | 4 cut(s) | 392, 520, 701, 779 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| BsoBI | CYCGRG | 1 cut(s) | 633 |
| Bsp1286I | GDGCHC | 2 cut(s) | 665, 773 |
| Bsp143I | GATC | 3 cut(s) | 76, 682, 760 |
| BspANI | GGCC | 4 cut(s) | 392, 520, 701, 779 |
| BspCNI | CTCAG | 4 cut(s) | 397, 421, 559, 593 |
| BspDI | ATCGAT | 1 cut(s) | 489 |
| BspFNI | CGCG | 1 cut(s) | 207 |
| BspPI | GGATC | 2 cut(s) | 71, 84 |
| BspT107I | GGYRCC | 4 cut(s) | 53, 446, 482, 644 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BsrBI | CCGCTC | 3 cut(s) | 85, 166, 638 |
| BsrFI | RCCGGY | 1 cut(s) | 443 |
| BssAI | RCCGGY | 1 cut(s) | 443 |
| BssECI | CCNNGG | 4 cut(s) | 177, 205, 648, 674 |
| BssMI | GATC | 3 cut(s) | 76, 682, 760 |
| BssNI | GRCGYC | 3 cut(s) | 54, 483, 656 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 2 cut(s) | 461, 675 |
| Bst4CI | ACNGT | 2 cut(s) | 7, 649 |
| Bst6I | CTCTTC | 1 cut(s) | 356 |
| BstACI | GRCGYC | 3 cut(s) | 54, 483, 656 |
| BstC8I | GCNNGC | 4 cut(s) | 38, 205, 212, 420 |
| BstDEI | CTNAG | 5 cut(s) | 270, 405, 429, 567, 580 |
| BstDSI | CCRYGG | 2 cut(s) | 205, 648 |
| BstF5I | GGATG | 3 cut(s) | 205, 646, 727 |
| BstFNI | CGCG | 1 cut(s) | 207 |
| BstH2I | RGCGCY | 2 cut(s) | 57, 486 |
| BstHHI | GCGC | 3 cut(s) | 56, 485, 745 |
| BstKTI | GATC | 3 cut(s) | 79, 685, 763 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 3 cut(s) | 76, 682, 760 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 200, 311, 517, 740 |
| BstNI | CCWGG | 2 cut(s) | 461, 675 |
| BstNSI | RCATGY | 1 cut(s) | 788 |
| BstSCI | CCNGG | 2 cut(s) | 459, 673 |
| BstUI | CGCG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 3 cut(s) | 105, 149, 727 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| Bsu15I | ATCGAT | 1 cut(s) | 489 |
| BsuRI | GGCC | 4 cut(s) | 392, 520, 701, 779 |
| BsuTUI | ATCGAT | 1 cut(s) | 489 |
| BtgI | CCRYGG | 2 cut(s) | 205, 648 |
| BtsCI | GGATG | 3 cut(s) | 205, 646, 727 |
| BtsI | GCAGTG | 1 cut(s) | 592 |
| BtsIMutI | CAGTG | 1 cut(s) | 592 |
| Cac8I | GCNNGC | 4 cut(s) | 38, 205, 212, 420 |
| CfoI | GCGC | 3 cut(s) | 56, 485, 745 |
| Cfr10I | RCCGGY | 1 cut(s) | 443 |
| Cfr13I | GGNCC | 4 cut(s) | 235, 518, 536, 678 |
| Cfr42I | CCGCGG | 1 cut(s) | 208 |
| ClaI | ATCGAT | 1 cut(s) | 489 |
| CseI | GACGC | 1 cut(s) | 664 |
| CspAI | ACCGGT | 1 cut(s) | 443 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 531, 566 |
| CviAII | CATG | 4 cut(s) | 122, 368, 755, 785 |
| DdeI | CTNAG | 5 cut(s) | 270, 405, 429, 567, 580 |
| DinI | GGCGCC | 2 cut(s) | 55, 484 |
| DpnI | GATC | 3 cut(s) | 78, 684, 762 |
| DpnII | GATC | 3 cut(s) | 76, 682, 760 |
| Eam1104I | CTCTTC | 1 cut(s) | 356 |
| EarI | CTCTTC | 1 cut(s) | 356 |
| EciI | GGCGGA | 3 cut(s) | 170, 289, 452 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco147I | AGGCCT | 1 cut(s) | 392 |
| Eco24I | GRGCYC | 2 cut(s) | 665, 773 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| Eco47I | GGWCC | 3 cut(s) | 235, 536, 678 |
| Eco57I | CTGAAG | 1 cut(s) | 272 |
| Eco88I | CYCGRG | 1 cut(s) | 633 |
| EcoO109I | RGGNCCY | 2 cut(s) | 235, 536 |
| EcoRI | GAATTC | 1 cut(s) | 65 |
| EcoRII | CCWGG | 2 cut(s) | 459, 673 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 2 cut(s) | 665, 773 |
| EgeI | GGCGCC | 2 cut(s) | 55, 484 |
| EheI | GGCGCC | 2 cut(s) | 55, 484 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 4 cut(s) | 125, 371, 758, 788 |
| FaiI | YATR | 6 cut(s) | 123, 369, 396, 620, 756, 786 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| FatI | CATG | 4 cut(s) | 121, 367, 754, 784 |
| FauI | CCCGC | 4 cut(s) | 29, 78, 212, 285 |
| FokI | GGATG | 3 cut(s) | 212, 653, 734 |
| FriOI | GRGCYC | 2 cut(s) | 665, 773 |
| FspBI | CTAG | 2 cut(s) | 18, 257 |
| GlaI | GCGC | 3 cut(s) | 55, 484, 744 |
| GsuI | CTGGAG | 1 cut(s) | 482 |
| HaeII | RGCGCY | 2 cut(s) | 57, 486 |
| HaeIII | GGCC | 4 cut(s) | 392, 520, 701, 779 |
| HapII | CCGG | 1 cut(s) | 444 |
| HgaI | GACGC | 1 cut(s) | 664 |
| HhaI | GCGC | 3 cut(s) | 56, 485, 745 |
| Hin1I | GRCGYC | 3 cut(s) | 54, 483, 656 |
| Hin1II | CATG | 4 cut(s) | 125, 371, 758, 788 |
| Hin6I | GCGC | 3 cut(s) | 54, 483, 743 |
| HinP1I | GCGC | 3 cut(s) | 54, 483, 743 |
| HincII | GTYRAC | 1 cut(s) | 530 |
| HindII | GTYRAC | 1 cut(s) | 530 |
| HinfI | GANTC | 5 cut(s) | 44, 89, 283, 296, 364 |
| HpaII | CCGG | 1 cut(s) | 444 |
| HphI | GGTGA | 6 cut(s) | 347, 508, 602, 620, 664, 737 |
| Hpy166II | GTNNAC | 1 cut(s) | 530 |
| Hpy188I | TCNGA | 3 cut(s) | 406, 682, 687 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| Hpy8I | GTNNAC | 1 cut(s) | 530 |
| Hpy99I | CGWCG | 2 cut(s) | 383, 386 |
| HpyAV | CCTTC | 3 cut(s) | 17, 259, 268 |
| HpyCH4III | ACNGT | 2 cut(s) | 7, 649 |
| HpyCH4V | TGCA | 3 cut(s) | 121, 371, 784 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 200, 311, 517, 740 |
| HpyF3I | CTNAG | 5 cut(s) | 270, 405, 429, 567, 580 |
| Hsp92I | GRCGYC | 3 cut(s) | 54, 483, 656 |
| Hsp92II | CATG | 4 cut(s) | 125, 371, 758, 788 |
| HspAI | GCGC | 3 cut(s) | 54, 483, 743 |
| KasI | GGCGCC | 2 cut(s) | 53, 482 |
| KspI | CCGCGG | 1 cut(s) | 208 |
| Kzo9I | GATC | 3 cut(s) | 76, 682, 760 |
| LmnI | GCTCC | 4 cut(s) | 316, 463, 559, 676 |
| Lsp1109I | GCAGC | 3 cut(s) | 105, 149, 727 |
| LweI | GCATC | 3 cut(s) | 112, 178, 190 |
| MaeI | CTAG | 2 cut(s) | 18, 257 |
| MaeIII | GTNAC | 1 cut(s) | 652 |
| MalI | GATC | 3 cut(s) | 78, 684, 762 |
| MbiI | CCGCTC | 3 cut(s) | 85, 166, 638 |
| MboI | GATC | 3 cut(s) | 76, 682, 760 |
| MboII | GAAGA | 3 cut(s) | 278, 373, 770 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MhlI | GDGCHC | 2 cut(s) | 665, 773 |
| MluCI | AATT | 2 cut(s) | 65, 600 |
| Mly113I | GGCGCC | 2 cut(s) | 54, 483 |
| MlyI | GAGTC | 2 cut(s) | 305, 373 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 9 cut(s) | 175, 325, 331, 367, 382, 400, 424, 562, 745 |
| MseI | TTAA | 2 cut(s) | 71, 414 |
| MslI | CAYNNNNRTG | 1 cut(s) | 650 |
| MspA1I | CMGCKG | 2 cut(s) | 207, 292 |
| MspI | CCGG | 1 cut(s) | 444 |
| MspR9I | CCNGG | 2 cut(s) | 461, 675 |
| MvaI | CCWGG | 2 cut(s) | 461, 675 |
| MvnI | CGCG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 200, 311, 517, 740 |
| NarI | GGCGCC | 2 cut(s) | 54, 483 |
| NdeII | GATC | 3 cut(s) | 76, 682, 760 |
| NlaIII | CATG | 4 cut(s) | 125, 371, 758, 788 |
| NmeAIII | GCCGAG | 1 cut(s) | 684 |
| NmuCI | GTSAC | 1 cut(s) | 652 |
| NspI | RCATGY | 1 cut(s) | 788 |
| OliI | CACNNNNGTG | 1 cut(s) | 650 |
| PceI | AGGCCT | 1 cut(s) | 392 |
| PfeI | GAWTC | 3 cut(s) | 44, 89, 283 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 231, 492 |
| PinAI | ACCGGT | 1 cut(s) | 443 |
| PleI | GAGTC | 2 cut(s) | 304, 372 |
| PluTI | GGCGCC | 2 cut(s) | 57, 486 |
| PpsI | GAGTC | 2 cut(s) | 304, 372 |
| PpuMI | RGGWCCY | 2 cut(s) | 235, 536 |
| Psp5II | RGGWCCY | 2 cut(s) | 235, 536 |
| Psp6I | CCWGG | 2 cut(s) | 459, 673 |
| PspGI | CCWGG | 2 cut(s) | 459, 673 |
| PspPI | GGNCC | 4 cut(s) | 235, 518, 536, 678 |
| PspPPI | RGGWCCY | 2 cut(s) | 235, 536 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 1 cut(s) | 650 |
| SacII | CCGCGG | 1 cut(s) | 208 |
| SaqAI | TTAA | 2 cut(s) | 71, 414 |
| Sau3AI | GATC | 3 cut(s) | 76, 682, 760 |
| Sau96I | GGNCC | 4 cut(s) | 235, 518, 536, 678 |
| SchI | GAGTC | 2 cut(s) | 305, 373 |
| ScrFI | CCNGG | 2 cut(s) | 461, 675 |
| SduI | GDGCHC | 2 cut(s) | 665, 773 |
| SfaNI | GCATC | 3 cut(s) | 112, 178, 190 |
| SfoI | GGCGCC | 2 cut(s) | 55, 484 |
| Sfr303I | CCGCGG | 1 cut(s) | 208 |
| SgrBI | CCGCGG | 1 cut(s) | 208 |
| SinI | GGWCC | 3 cut(s) | 235, 536, 678 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 650 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 65, 600 |
| SseBI | AGGCCT | 1 cut(s) | 392 |
| SspDI | GGCGCC | 2 cut(s) | 53, 482 |
| SspMI | CTAG | 2 cut(s) | 18, 257 |
| StuI | AGGCCT | 1 cut(s) | 392 |
| StyD4I | CCNGG | 2 cut(s) | 459, 673 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 2 cut(s) | 7, 649 |
| TaqI | TCGA | 3 cut(s) | 489, 706, 767 |
| TaqII | GACCGA | 1 cut(s) | 176 |
| TasI | AATT | 2 cut(s) | 65, 600 |
| TauI | GCSGC | 6 cut(s) | 17, 169, 210, 305, 696, 715 |
| TfiI | GAWTC | 3 cut(s) | 44, 89, 283 |
| Tru1I | TTAA | 2 cut(s) | 71, 414 |
| Tru9I | TTAA | 2 cut(s) | 71, 414 |
| TscAI | CASTG | 1 cut(s) | 592 |
| TseFI | GTSAC | 1 cut(s) | 652 |
| TseI | GCWGC | 4 cut(s) | 11, 118, 137, 740 |
| Tsp45I | GTSAC | 1 cut(s) | 652 |
| TspDTI | ATGAA | 2 cut(s) | 607, 771 |
| TspGWI | ACGGA | 2 cut(s) | 89, 100 |
| TspRI | CASTG | 1 cut(s) | 592 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 231, 492 |
| VpaK11BI | GGWCC | 3 cut(s) | 235, 536, 678 |
| XapI | RAATTY | 2 cut(s) | 65, 600 |
| XceI | RCATGY | 1 cut(s) | 788 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |
| XspI | CTAG | 2 cut(s) | 18, 257 |