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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 601 |
| AccB1I | GGYRCC | 2 cut(s) | 275, 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 321 |
| AccBSI | CCGCTC | 4 cut(s) | 40, 386, 435, 539 |
| AccII | CGCG | 1 cut(s) | 510 |
| AcoI | YGGCCR | 2 cut(s) | 9, 415 |
| AcsI | RAATTY | 1 cut(s) | 458 |
| AcuI | CTGAAG | 1 cut(s) | 651 |
| AcyI | GRCGYC | 2 cut(s) | 312, 485 |
| AfaI | GTAC | 2 cut(s) | 242, 382 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 75, 76, 202, 321, 513 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 2 cut(s) | 218, 425 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 561 |
| AjnI | CCWGG | 2 cut(s) | 24, 412 |
| AluBI | AGCT | 4 cut(s) | 284, 365, 395, 476 |
| AluI | AGCT | 4 cut(s) | 284, 365, 395, 476 |
| Alw26I | GTCTC | 1 cut(s) | 548 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 25 |
| Ama87I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| AoxI | GGCC | 5 cut(s) | 9, 193, 270, 415, 525 |
| ApeKI | GCWGC | 9 cut(s) | 19, 73, 200, 263, 298, 301, 349, 395, 473 |
| ApoI | RAATTY | 1 cut(s) | 458 |
| AspLEI | GCGC | 3 cut(s) | 314, 473, 512 |
| AspS9I | GGNCC | 2 cut(s) | 79, 526 |
| AsuC2I | CCSGG | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 2 cut(s) | 97, 176 |
| AvaI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| BalI | TGGCCA | 2 cut(s) | 11, 417 |
| BanI | GGYRCC | 2 cut(s) | 275, 311 |
| BanII | GRGCYC | 1 cut(s) | 433 |
| BbsI | GAAGAC | 1 cut(s) | 254 |
| BbvCI | CCTCAGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 9 cut(s) | 31, 60, 187, 275, 285, 313, 361, 382, 485 |
| BccI | CCATC | 4 cut(s) | 323, 361, 536, 609 |
| BceAI | ACGGC | 2 cut(s) | 180, 579 |
| BciT130I | CCWGG | 2 cut(s) | 26, 414 |
| BcnI | CCSGG | 1 cut(s) | 83 |
| BcoDI | GTCTC | 1 cut(s) | 548 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BfoI | RGCGCY | 1 cut(s) | 315 |
| BfuAI | ACCTGC | 1 cut(s) | 601 |
| BlpI | GCTNAGC | 1 cut(s) | 477 |
| Bme1390I | CCNGG | 3 cut(s) | 26, 83, 414 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 561 |
| BmeT110I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 526 |
| BmiI | GGNNCC | 5 cut(s) | 80, 277, 313, 430, 643 |
| BmrFI | CCNGG | 3 cut(s) | 26, 83, 414 |
| BmrI | ACTGGG | 2 cut(s) | 331, 555 |
| BmsI | GCATC | 3 cut(s) | 285, 327, 616 |
| BmuI | ACTGGG | 2 cut(s) | 331, 555 |
| BpiI | GAAGAC | 1 cut(s) | 254 |
| BpmI | CTGGAG | 3 cut(s) | 47, 179, 542 |
| Bpu10I | CCTNAGC | 2 cut(s) | 186, 280 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 477 |
| BpuMI | CCSGG | 1 cut(s) | 83 |
| BsaHI | GRCGYC | 2 cut(s) | 312, 485 |
| BsaI | GGTCTC | 1 cut(s) | 548 |
| BsaJI | CCNNGG | 5 cut(s) | 48, 258, 357, 412, 574 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 633, 663 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 75, 76, 202, 321, 513 |
| Bse118I | RCCGGY | 2 cut(s) | 272, 340 |
| Bse1I | ACTGG | 4 cut(s) | 162, 326, 378, 561 |
| BseBI | CCWGG | 2 cut(s) | 26, 414 |
| BseDI | CCNNGG | 5 cut(s) | 48, 258, 357, 412, 574 |
| BseGI | GGATG | 3 cut(s) | 353, 547, 601 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 75, 76, 202, 321, 513 |
| BseMII | CTCAG | 2 cut(s) | 177, 491 |
| BseNI | ACTGG | 4 cut(s) | 162, 326, 378, 561 |
| BseXI | GCAGC | 9 cut(s) | 31, 60, 187, 275, 285, 313, 361, 382, 485 |
| BseYI | CCCAGC | 1 cut(s) | 512 |
| BsgI | GTGCAG | 1 cut(s) | 368 |
| Bsh1236I | CGCG | 1 cut(s) | 510 |
| Bsh1285I | CGRYCG | 1 cut(s) | 345 |
| BshFI | GGCC | 5 cut(s) | 11, 195, 272, 417, 527 |
| BshNI | GGYRCC | 2 cut(s) | 275, 311 |
| BsiEI | CGRYCG | 1 cut(s) | 345 |
| BsiHKCI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| BsiSI | CCGG | 3 cut(s) | 82, 273, 341 |
| BslFI | GGGAC | 4 cut(s) | 52, 92, 490, 549 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 75, 76, 202, 321, 513 |
| BsmAI | GTCTC | 1 cut(s) | 548 |
| BsmFI | GGGAC | 4 cut(s) | 52, 92, 490, 549 |
| BsnI | GGCC | 5 cut(s) | 11, 195, 272, 417, 527 |
| Bso31I | GGTCTC | 1 cut(s) | 548 |
| BsoBI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| Bsp1286I | GDGCHC | 1 cut(s) | 433 |
| Bsp143I | GATC | 2 cut(s) | 111, 147 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 477 |
| BspANI | GGCC | 5 cut(s) | 11, 195, 272, 417, 527 |
| BspCNI | CTCAG | 2 cut(s) | 178, 490 |
| BspFNI | CGCG | 1 cut(s) | 510 |
| BspLI | GGNNCC | 5 cut(s) | 80, 277, 313, 430, 643 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspMI | ACCTGC | 1 cut(s) | 601 |
| BspT107I | GGYRCC | 2 cut(s) | 275, 311 |
| BspTNI | GGTCTC | 1 cut(s) | 548 |
| BsrBI | CCGCTC | 4 cut(s) | 40, 386, 435, 539 |
| BsrFI | RCCGGY | 2 cut(s) | 272, 340 |
| BsrI | ACTGG | 4 cut(s) | 162, 326, 378, 561 |
| BssAI | RCCGGY | 2 cut(s) | 272, 340 |
| BssECI | CCNNGG | 5 cut(s) | 48, 258, 357, 412, 574 |
| BssMI | GATC | 2 cut(s) | 111, 147 |
| BssNI | GRCGYC | 2 cut(s) | 312, 485 |
| BssT1I | CCWWGG | 2 cut(s) | 48, 357 |
| Bst2UI | CCWGG | 2 cut(s) | 26, 414 |
| BstACI | GRCGYC | 2 cut(s) | 312, 485 |
| BstC8I | GCNNGC | 3 cut(s) | 175, 433, 619 |
| BstDEI | CTNAG | 3 cut(s) | 186, 280, 477 |
| BstEII | GGTNACC | 1 cut(s) | 85 |
| BstF5I | GGATG | 3 cut(s) | 353, 547, 601 |
| BstFNI | CGCG | 1 cut(s) | 510 |
| BstH2I | RGCGCY | 1 cut(s) | 315 |
| BstHHI | GCGC | 3 cut(s) | 314, 473, 512 |
| BstKTI | GATC | 2 cut(s) | 114, 150 |
| BstMAI | GTCTC | 1 cut(s) | 548 |
| BstMBI | GATC | 2 cut(s) | 111, 147 |
| BstMCI | CGRYCG | 1 cut(s) | 345 |
| BstNI | CCWGG | 2 cut(s) | 26, 414 |
| BstNSI | RCATGY | 1 cut(s) | 67 |
| BstPI | GGTNACC | 1 cut(s) | 85 |
| BstSCI | CCNGG | 3 cut(s) | 24, 81, 412 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstUI | CGCG | 1 cut(s) | 510 |
| BstV1I | GCAGC | 9 cut(s) | 31, 60, 187, 275, 285, 313, 361, 382, 485 |
| BstV2I | GAAGAC | 1 cut(s) | 254 |
| BsuRI | GGCC | 5 cut(s) | 11, 195, 272, 417, 527 |
| BtsCI | GGATG | 3 cut(s) | 353, 547, 601 |
| BtsIMutI | CAGTG | 1 cut(s) | 251 |
| BveI | ACCTGC | 1 cut(s) | 601 |
| Cac8I | GCNNGC | 3 cut(s) | 175, 433, 619 |
| CaiI | CAGNNNCTG | 1 cut(s) | 25 |
| CfoI | GCGC | 3 cut(s) | 314, 473, 512 |
| Cfr10I | RCCGGY | 2 cut(s) | 272, 340 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 526 |
| CseI | GACGC | 1 cut(s) | 493 |
| Csp6I | GTAC | 2 cut(s) | 241, 381 |
| CviAII | CATG | 2 cut(s) | 64, 419 |
| CviQI | GTAC | 2 cut(s) | 241, 381 |
| DdeI | CTNAG | 3 cut(s) | 186, 280, 477 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| DpnI | GATC | 2 cut(s) | 113, 149 |
| DpnII | GATC | 2 cut(s) | 111, 147 |
| DriI | GACNNNNNGTC | 1 cut(s) | 561 |
| EaeI | YGGCCR | 2 cut(s) | 9, 415 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 561 |
| EciI | GGCGGA | 2 cut(s) | 68, 251 |
| Eco130I | CCWWGG | 2 cut(s) | 48, 357 |
| Eco24I | GRGCYC | 1 cut(s) | 433 |
| Eco31I | GGTCTC | 1 cut(s) | 548 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 651 |
| Eco88I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| Eco91I | GGTNACC | 1 cut(s) | 85 |
| EcoO65I | GGTNACC | 1 cut(s) | 85 |
| EcoRI | GAATTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 2 cut(s) | 24, 412 |
| EcoT14I | CCWWGG | 2 cut(s) | 48, 357 |
| EcoT38I | GRGCYC | 1 cut(s) | 433 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 2 cut(s) | 48, 357 |
| FaeI | CATG | 2 cut(s) | 67, 422 |
| FaiI | YATR | 4 cut(s) | 65, 223, 225, 420 |
| FaqI | GGGAC | 4 cut(s) | 52, 92, 490, 549 |
| FatI | CATG | 2 cut(s) | 63, 418 |
| FauI | CCCGC | 6 cut(s) | 69, 114, 437, 440, 515, 667 |
| FokI | GGATG | 3 cut(s) | 340, 554, 588 |
| FriOI | GRGCYC | 1 cut(s) | 433 |
| GlaI | GCGC | 3 cut(s) | 313, 472, 511 |
| GsaI | CCCAGC | 1 cut(s) | 516 |
| GsuI | CTGGAG | 3 cut(s) | 47, 179, 542 |
| HaeII | RGCGCY | 1 cut(s) | 315 |
| HaeIII | GGCC | 5 cut(s) | 11, 195, 272, 417, 527 |
| HapII | CCGG | 3 cut(s) | 82, 273, 341 |
| HgaI | GACGC | 1 cut(s) | 493 |
| HhaI | GCGC | 3 cut(s) | 314, 473, 512 |
| Hin1I | GRCGYC | 2 cut(s) | 312, 485 |
| Hin1II | CATG | 2 cut(s) | 67, 422 |
| Hin6I | GCGC | 3 cut(s) | 312, 471, 510 |
| HinP1I | GCGC | 3 cut(s) | 312, 471, 510 |
| HinfI | GANTC | 2 cut(s) | 125, 218 |
| HpaII | CCGG | 3 cut(s) | 82, 273, 341 |
| HphI | GGTGA | 2 cut(s) | 97, 176 |
| Hpy188I | TCNGA | 1 cut(s) | 583 |
| Hpy188III | TCNNGA | 1 cut(s) | 521 |
| Hpy99I | CGWCG | 1 cut(s) | 650 |
| HpyAV | CCTTC | 4 cut(s) | 88, 262, 419, 626 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 648 |
| HpyCH4V | TGCA | 2 cut(s) | 301, 349 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 280, 477 |
| HpySE526I | ACGT | 2 cut(s) | 6, 648 |
| Hsp92I | GRCGYC | 2 cut(s) | 312, 485 |
| Hsp92II | CATG | 2 cut(s) | 67, 422 |
| HspAI | GCGC | 3 cut(s) | 312, 471, 510 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| Kzo9I | GATC | 2 cut(s) | 111, 147 |
| LmnI | GCTCC | 6 cut(s) | 28, 55, 370, 391, 428, 641 |
| Lsp1109I | GCAGC | 9 cut(s) | 31, 60, 187, 275, 285, 313, 361, 382, 485 |
| LweI | GCATC | 3 cut(s) | 285, 327, 616 |
| MaeII | ACGT | 2 cut(s) | 6, 648 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 2 cut(s) | 113, 149 |
| MbiI | CCGCTC | 4 cut(s) | 40, 386, 435, 539 |
| MboI | GATC | 2 cut(s) | 111, 147 |
| MboII | GAAGA | 2 cut(s) | 112, 259 |
| MhlI | GDGCHC | 1 cut(s) | 433 |
| MlsI | TGGCCA | 2 cut(s) | 11, 417 |
| MluCI | AATT | 2 cut(s) | 458, 494 |
| MluNI | TGGCCA | 2 cut(s) | 11, 417 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 1 cut(s) | 134 |
| Mox20I | TGGCCA | 2 cut(s) | 11, 417 |
| MscI | TGGCCA | 2 cut(s) | 11, 417 |
| Msp20I | TGGCCA | 2 cut(s) | 11, 417 |
| MspA1I | CMGCKG | 5 cut(s) | 121, 212, 395, 481, 621 |
| MspI | CCGG | 3 cut(s) | 82, 273, 341 |
| MspR9I | CCNGG | 3 cut(s) | 26, 83, 414 |
| MvaI | CCWGG | 2 cut(s) | 26, 414 |
| MvnI | CGCG | 1 cut(s) | 510 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 1 cut(s) | 83 |
| NdeII | GATC | 2 cut(s) | 111, 147 |
| NlaIII | CATG | 2 cut(s) | 67, 422 |
| NlaIV | GGNNCC | 5 cut(s) | 80, 277, 313, 430, 643 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NspI | RCATGY | 1 cut(s) | 67 |
| PciI | ACATGT | 1 cut(s) | 63 |
| PfeI | GAWTC | 1 cut(s) | 218 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 321 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PscI | ACATGT | 1 cut(s) | 63 |
| Psp6I | CCWGG | 2 cut(s) | 24, 412 |
| PspEI | GGTNACC | 1 cut(s) | 85 |
| PspFI | CCCAGC | 1 cut(s) | 512 |
| PspGI | CCWGG | 2 cut(s) | 24, 412 |
| PspN4I | GGNNCC | 5 cut(s) | 80, 277, 313, 430, 643 |
| PspPI | GGNCC | 2 cut(s) | 79, 526 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| PstNI | CAGNNNCTG | 1 cut(s) | 25 |
| PvuII | CAGCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 2 cut(s) | 242, 382 |
| RsaNI | GTAC | 2 cut(s) | 241, 381 |
| Sau3AI | GATC | 2 cut(s) | 111, 147 |
| Sau96I | GGNCC | 2 cut(s) | 79, 526 |
| SchI | GAGTC | 1 cut(s) | 134 |
| ScrFI | CCNGG | 3 cut(s) | 26, 83, 414 |
| SduI | GDGCHC | 1 cut(s) | 433 |
| SetI | ASST | 9 cut(s) | 9, 27, 286, 367, 397, 478, 615, 637, 651 |
| SfaNI | GCATC | 3 cut(s) | 285, 327, 616 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| SinI | GGWCC | 1 cut(s) | 79 |
| Sse9I | AATT | 2 cut(s) | 458, 494 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| StyD4I | CCNGG | 3 cut(s) | 24, 81, 412 |
| StyI | CCWWGG | 2 cut(s) | 48, 357 |
| TaiI | ACGT | 2 cut(s) | 9, 651 |
| TaqI | TCGA | 2 cut(s) | 318, 335 |
| TaqII | GACCGA | 2 cut(s) | 104, 272 |
| TasI | AATT | 2 cut(s) | 458, 494 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TauI | GCSGC | 2 cut(s) | 134, 212 |
| TfiI | GAWTC | 1 cut(s) | 218 |
| TscAI | CASTG | 1 cut(s) | 258 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 9 cut(s) | 19, 73, 200, 263, 298, 301, 349, 395, 473 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspRI | CASTG | 1 cut(s) | 258 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 321 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XapI | RAATTY | 1 cut(s) | 458 |
| XceI | RCATGY | 1 cut(s) | 67 |