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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 693, 713 |
| AccII | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| AcoI | YGGCCR | 6 cut(s) | 13, 204, 308, 330, 504, 652 |
| AcyI | GRCGYC | 1 cut(s) | 714 |
| AfaI | GTAC | 1 cut(s) | 604 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 60, 111, 297, 620, 703, 708, 709 |
| AgsI | TTSAA | 1 cut(s) | 223 |
| AjnI | CCWGG | 1 cut(s) | 702 |
| AluBI | AGCT | 1 cut(s) | 663 |
| AluI | AGCT | 1 cut(s) | 663 |
| Alw26I | GTCTC | 2 cut(s) | 252, 550 |
| Ama87I | CYCGRG | 2 cut(s) | 20, 150 |
| ApeKI | GCWGC | 3 cut(s) | 50, 570, 631 |
| AspLEI | GCGC | 7 cut(s) | 92, 118, 393, 458, 670, 675, 716 |
| AspS9I | GGNCC | 6 cut(s) | 148, 191, 518, 525, 541, 598 |
| AsuC2I | CCSGG | 4 cut(s) | 151, 152, 395, 496 |
| AsuHPI | GGTGA | 3 cut(s) | 350, 457, 574 |
| AvaI | CYCGRG | 2 cut(s) | 20, 150 |
| AvaII | GGWCC | 2 cut(s) | 518, 525 |
| BaeGI | GKGCMC | 1 cut(s) | 698 |
| BanI | GGYRCC | 2 cut(s) | 693, 713 |
| BauI | CACGAG | 3 cut(s) | 36, 316, 562 |
| BbvI | GCAGC | 3 cut(s) | 37, 557, 618 |
| BceAI | ACGGC | 6 cut(s) | 181, 186, 194, 295, 337, 585 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 647, 681 |
| BciT130I | CCWGG | 1 cut(s) | 704 |
| BcnI | CCSGG | 4 cut(s) | 151, 152, 395, 496 |
| BcoDI | GTCTC | 2 cut(s) | 252, 550 |
| BfaI | CTAG | 2 cut(s) | 81, 96 |
| BfoI | RGCGCY | 3 cut(s) | 93, 676, 717 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 113 |
| Bme1390I | CCNGG | 5 cut(s) | 151, 152, 395, 496, 704 |
| Bme18I | GGWCC | 2 cut(s) | 518, 525 |
| BmeT110I | CYCGRG | 2 cut(s) | 20, 150 |
| BmgT120I | GGNCC | 6 cut(s) | 148, 191, 518, 525, 541, 598 |
| BmiI | GGNNCC | 6 cut(s) | 103, 542, 599, 695, 715, 733 |
| BmrFI | CCNGG | 5 cut(s) | 151, 152, 395, 496, 704 |
| BmrI | ACTGGG | 1 cut(s) | 603 |
| BmsI | GCATC | 1 cut(s) | 34 |
| BmuI | ACTGGG | 1 cut(s) | 603 |
| BpuEI | CTTGAG | 1 cut(s) | 625 |
| BpuMI | CCSGG | 4 cut(s) | 151, 152, 395, 496 |
| BsaHI | GRCGYC | 1 cut(s) | 714 |
| BsaI | GGTCTC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 8 cut(s) | 30, 150, 333, 447, 521, 614, 702, 717 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 470, 500 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 60, 111, 297, 620, 703, 708, 709 |
| Bse118I | RCCGGY | 2 cut(s) | 125, 422 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| BseBI | CCWGG | 1 cut(s) | 704 |
| BseDI | CCNNGG | 8 cut(s) | 30, 150, 333, 447, 521, 614, 702, 717 |
| BseGI | GGATG | 2 cut(s) | 49, 73 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 60, 111, 297, 620, 703, 708, 709 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseSI | GKGCMC | 1 cut(s) | 698 |
| BseX3I | CGGCCG | 2 cut(s) | 308, 652 |
| BseXI | GCAGC | 3 cut(s) | 37, 557, 618 |
| Bsh1236I | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| Bsh1285I | CGRYCG | 4 cut(s) | 311, 427, 553, 655 |
| BshNI | GGYRCC | 2 cut(s) | 693, 713 |
| BsiEI | CGRYCG | 4 cut(s) | 311, 427, 553, 655 |
| BsiHKCI | CYCGRG | 2 cut(s) | 20, 150 |
| BsiSI | CCGG | 8 cut(s) | 126, 151, 186, 295, 395, 412, 423, 495 |
| BsiWI | CGTACG | 1 cut(s) | 602 |
| BslFI | GGGAC | 1 cut(s) | 3 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 60, 111, 297, 620, 703, 708, 709 |
| BsmAI | GTCTC | 2 cut(s) | 252, 550 |
| BsmBI | CGTCTC | 1 cut(s) | 550 |
| BsmFI | GGGAC | 1 cut(s) | 3 |
| Bso31I | GGTCTC | 1 cut(s) | 252 |
| BsoBI | CYCGRG | 2 cut(s) | 20, 150 |
| Bsp1286I | GDGCHC | 1 cut(s) | 698 |
| Bsp143I | GATC | 3 cut(s) | 214, 323, 462 |
| Bsp19I | CCATGG | 1 cut(s) | 447 |
| Bsp68I | TCGCGA | 1 cut(s) | 429 |
| BspFNI | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| BspLI | GGNNCC | 6 cut(s) | 103, 542, 599, 695, 715, 733 |
| BspT107I | GGYRCC | 2 cut(s) | 693, 713 |
| BspTNI | GGTCTC | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 2 cut(s) | 125, 422 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssAI | RCCGGY | 2 cut(s) | 125, 422 |
| BssECI | CCNNGG | 8 cut(s) | 30, 150, 333, 447, 521, 614, 702, 717 |
| BssMI | GATC | 3 cut(s) | 214, 323, 462 |
| BssNI | GRCGYC | 1 cut(s) | 714 |
| BssSI | CACGAG | 3 cut(s) | 36, 316, 562 |
| BssT1I | CCWWGG | 3 cut(s) | 30, 333, 447 |
| Bst2BI | CACGAG | 3 cut(s) | 36, 316, 562 |
| Bst2UI | CCWGG | 1 cut(s) | 704 |
| Bst4CI | ACNGT | 1 cut(s) | 518 |
| BstACI | GRCGYC | 1 cut(s) | 714 |
| BstC8I | GCNNGC | 5 cut(s) | 127, 228, 305, 677, 698 |
| BstDSI | CCRYGG | 3 cut(s) | 447, 521, 614 |
| BstF5I | GGATG | 2 cut(s) | 49, 73 |
| BstFNI | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| BstH2I | RGCGCY | 3 cut(s) | 93, 676, 717 |
| BstHHI | GCGC | 7 cut(s) | 92, 118, 393, 458, 670, 675, 716 |
| BstKTI | GATC | 3 cut(s) | 217, 326, 465 |
| BstMAI | GTCTC | 2 cut(s) | 252, 550 |
| BstMBI | GATC | 3 cut(s) | 214, 323, 462 |
| BstMCI | CGRYCG | 4 cut(s) | 311, 427, 553, 655 |
| BstNI | CCWGG | 1 cut(s) | 704 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstSCI | CCNGG | 5 cut(s) | 149, 150, 393, 494, 702 |
| BstSLI | GKGCMC | 1 cut(s) | 698 |
| BstUI | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| BstV1I | GCAGC | 3 cut(s) | 37, 557, 618 |
| BstZI | CGGCCG | 2 cut(s) | 308, 652 |
| BtgI | CCRYGG | 3 cut(s) | 447, 521, 614 |
| BtsCI | GGATG | 2 cut(s) | 49, 73 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| BtuMI | TCGCGA | 1 cut(s) | 429 |
| Cac8I | GCNNGC | 5 cut(s) | 127, 228, 305, 677, 698 |
| CciNI | GCGGCCGC | 1 cut(s) | 652 |
| CfoI | GCGC | 7 cut(s) | 92, 118, 393, 458, 670, 675, 716 |
| Cfr10I | RCCGGY | 2 cut(s) | 125, 422 |
| Cfr13I | GGNCC | 6 cut(s) | 148, 191, 518, 525, 541, 598 |
| Cfr42I | CCGCGG | 1 cut(s) | 617 |
| Cfr9I | CCCGGG | 1 cut(s) | 150 |
| CpoI | CGGWCCG | 1 cut(s) | 518 |
| CseI | GACGC | 3 cut(s) | 272, 480, 567 |
| Csp6I | GTAC | 1 cut(s) | 603 |
| CspI | CGGWCCG | 1 cut(s) | 518 |
| CviAII | CATG | 3 cut(s) | 304, 448, 576 |
| CviQI | GTAC | 1 cut(s) | 603 |
| DinI | GGCGCC | 1 cut(s) | 715 |
| DpnI | GATC | 3 cut(s) | 216, 325, 464 |
| DpnII | GATC | 3 cut(s) | 214, 323, 462 |
| EaeI | YGGCCR | 6 cut(s) | 13, 204, 308, 330, 504, 652 |
| EagI | CGGCCG | 2 cut(s) | 308, 652 |
| EciI | GGCGGA | 2 cut(s) | 94, 339 |
| EclXI | CGGCCG | 2 cut(s) | 308, 652 |
| Eco130I | CCWWGG | 3 cut(s) | 30, 333, 447 |
| Eco31I | GGTCTC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 2 cut(s) | 518, 525 |
| Eco52I | CGGCCG | 2 cut(s) | 308, 652 |
| Eco88I | CYCGRG | 2 cut(s) | 20, 150 |
| EcoRII | CCWGG | 1 cut(s) | 702 |
| EcoT14I | CCWWGG | 3 cut(s) | 30, 333, 447 |
| EgeI | GGCGCC | 1 cut(s) | 715 |
| EheI | GGCGCC | 1 cut(s) | 715 |
| ErhI | CCWWGG | 3 cut(s) | 30, 333, 447 |
| Esp3I | CGTCTC | 1 cut(s) | 550 |
| FaeI | CATG | 3 cut(s) | 307, 451, 579 |
| FaiI | YATR | 6 cut(s) | 305, 449, 485, 489, 514, 577 |
| FaqI | GGGAC | 1 cut(s) | 3 |
| FatI | CATG | 3 cut(s) | 303, 447, 575 |
| FauI | CCCGC | 4 cut(s) | 219, 291, 621, 705 |
| FokI | GGATG | 2 cut(s) | 56, 80 |
| FspBI | CTAG | 2 cut(s) | 81, 96 |
| GlaI | GCGC | 7 cut(s) | 91, 117, 392, 457, 669, 674, 715 |
| HaeII | RGCGCY | 3 cut(s) | 93, 676, 717 |
| HapII | CCGG | 8 cut(s) | 126, 151, 186, 295, 395, 412, 423, 495 |
| HgaI | GACGC | 3 cut(s) | 272, 480, 567 |
| HhaI | GCGC | 7 cut(s) | 92, 118, 393, 458, 670, 675, 716 |
| Hin1I | GRCGYC | 1 cut(s) | 714 |
| Hin1II | CATG | 3 cut(s) | 307, 451, 579 |
| Hin6I | GCGC | 7 cut(s) | 90, 116, 391, 456, 668, 673, 714 |
| HinP1I | GCGC | 7 cut(s) | 90, 116, 391, 456, 668, 673, 714 |
| HincII | GTYRAC | 1 cut(s) | 178 |
| HindII | GTYRAC | 1 cut(s) | 178 |
| HinfI | GANTC | 4 cut(s) | 143, 384, 404, 546 |
| HpaII | CCGG | 8 cut(s) | 126, 151, 186, 295, 395, 412, 423, 495 |
| HphI | GGTGA | 3 cut(s) | 350, 457, 574 |
| Hpy166II | GTNNAC | 5 cut(s) | 178, 239, 253, 315, 525 |
| Hpy188I | TCNGA | 1 cut(s) | 555 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 158, 428, 642 |
| Hpy8I | GTNNAC | 5 cut(s) | 178, 239, 253, 315, 525 |
| Hpy99I | CGWCG | 2 cut(s) | 113, 381 |
| HpyAV | CCTTC | 3 cut(s) | 264, 301, 356 |
| HpyCH4III | ACNGT | 1 cut(s) | 518 |
| Hsp92I | GRCGYC | 1 cut(s) | 714 |
| Hsp92II | CATG | 3 cut(s) | 307, 451, 579 |
| HspAI | GCGC | 7 cut(s) | 90, 116, 391, 456, 668, 673, 714 |
| KasI | GGCGCC | 1 cut(s) | 713 |
| KroI | GCCGGC | 1 cut(s) | 125 |
| KroNI | GCCGGC | 1 cut(s) | 127 |
| KspI | CCGCGG | 1 cut(s) | 617 |
| Kzo9I | GATC | 3 cut(s) | 214, 323, 462 |
| LmnI | GCTCC | 3 cut(s) | 107, 639, 737 |
| Lsp1109I | GCAGC | 3 cut(s) | 37, 557, 618 |
| LweI | GCATC | 1 cut(s) | 34 |
| MaeI | CTAG | 2 cut(s) | 81, 96 |
| MaeIII | GTNAC | 2 cut(s) | 338, 359 |
| MalI | GATC | 3 cut(s) | 216, 325, 464 |
| MboI | GATC | 3 cut(s) | 214, 323, 462 |
| MboII | GAAGA | 1 cut(s) | 318 |
| MhlI | GDGCHC | 1 cut(s) | 698 |
| MluCI | AATT | 1 cut(s) | 370 |
| Mly113I | GGCGCC | 1 cut(s) | 714 |
| MlyI | GAGTC | 3 cut(s) | 152, 378, 555 |
| MmeI | TCCRAC | 1 cut(s) | 533 |
| MroNI | GCCGGC | 1 cut(s) | 125 |
| MspA1I | CMGCKG | 2 cut(s) | 50, 616 |
| MspI | CCGG | 8 cut(s) | 126, 151, 186, 295, 395, 412, 423, 495 |
| MspR9I | CCNGG | 5 cut(s) | 151, 152, 395, 496, 704 |
| MteI | GCGCNGCGC | 1 cut(s) | 671 |
| MvaI | CCWGG | 1 cut(s) | 704 |
| MvnI | CGCG | 6 cut(s) | 118, 429, 456, 616, 657, 670 |
| NaeI | GCCGGC | 1 cut(s) | 127 |
| NarI | GGCGCC | 1 cut(s) | 714 |
| NciI | CCSGG | 4 cut(s) | 151, 152, 395, 496 |
| NcoI | CCATGG | 1 cut(s) | 447 |
| NdeII | GATC | 3 cut(s) | 214, 323, 462 |
| NgoMIV | GCCGGC | 1 cut(s) | 125 |
| NlaIII | CATG | 3 cut(s) | 307, 451, 579 |
| NlaIV | GGNNCC | 6 cut(s) | 103, 542, 599, 695, 715, 733 |
| NmeAIII | GCCGAG | 3 cut(s) | 484, 569, 742 |
| NmuCI | GTSAC | 1 cut(s) | 338 |
| NotI | GCGGCCGC | 1 cut(s) | 652 |
| NruI | TCGCGA | 1 cut(s) | 429 |
| NspI | RCATGY | 1 cut(s) | 307 |
| PaeI | GCATGC | 1 cut(s) | 307 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PdiI | GCCGGC | 1 cut(s) | 127 |
| PfeI | GAWTC | 1 cut(s) | 404 |
| Pfl23II | CGTACG | 1 cut(s) | 602 |
| PleI | GAGTC | 3 cut(s) | 151, 378, 554 |
| PluTI | GGCGCC | 1 cut(s) | 717 |
| PpsI | GAGTC | 3 cut(s) | 151, 378, 554 |
| Psp6I | CCWGG | 1 cut(s) | 702 |
| PspGI | CCWGG | 1 cut(s) | 702 |
| PspLI | CGTACG | 1 cut(s) | 602 |
| PspN4I | GGNNCC | 6 cut(s) | 103, 542, 599, 695, 715, 733 |
| PspPI | GGNCC | 6 cut(s) | 148, 191, 518, 525, 541, 598 |
| RruI | TCGCGA | 1 cut(s) | 429 |
| RsaI | GTAC | 1 cut(s) | 604 |
| RsaNI | GTAC | 1 cut(s) | 603 |
| Rsr2I | CGGWCCG | 1 cut(s) | 518 |
| RsrII | CGGWCCG | 1 cut(s) | 518 |
| SacII | CCGCGG | 1 cut(s) | 617 |
| Sau3AI | GATC | 3 cut(s) | 214, 323, 462 |
| Sau96I | GGNCC | 6 cut(s) | 148, 191, 518, 525, 541, 598 |
| SchI | GAGTC | 3 cut(s) | 152, 378, 555 |
| ScrFI | CCNGG | 5 cut(s) | 151, 152, 395, 496, 704 |
| SduI | GDGCHC | 1 cut(s) | 698 |
| SetI | ASST | 4 cut(s) | 77, 348, 530, 665 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfoI | GGCGCC | 1 cut(s) | 715 |
| Sfr303I | CCGCGG | 1 cut(s) | 617 |
| SgrBI | CCGCGG | 1 cut(s) | 617 |
| SinI | GGWCC | 2 cut(s) | 518, 525 |
| SmaI | CCCGGG | 1 cut(s) | 152 |
| SmlI | CTYRAG | 1 cut(s) | 640 |
| SmoI | CTYRAG | 1 cut(s) | 640 |
| SphI | GCATGC | 1 cut(s) | 307 |
| Sse9I | AATT | 1 cut(s) | 370 |
| SspDI | GGCGCC | 1 cut(s) | 713 |
| SspMI | CTAG | 2 cut(s) | 81, 96 |
| StyD4I | CCNGG | 5 cut(s) | 149, 150, 393, 494, 702 |
| StyI | CCWWGG | 3 cut(s) | 30, 333, 447 |
| TaaI | ACNGT | 1 cut(s) | 518 |
| TaqI | TCGA | 2 cut(s) | 159, 739 |
| TaqII | GACCGA | 1 cut(s) | 539 |
| TasI | AATT | 1 cut(s) | 370 |
| TauI | GCSGC | 9 cut(s) | 50, 95, 209, 267, 310, 506, 654, 657, 673 |
| TfiI | GAWTC | 1 cut(s) | 404 |
| TscAI | CASTG | 1 cut(s) | 598 |
| TseFI | GTSAC | 1 cut(s) | 338 |
| TseI | GCWGC | 3 cut(s) | 50, 570, 631 |
| Tsp45I | GTSAC | 1 cut(s) | 338 |
| TspGWI | ACGGA | 1 cut(s) | 510 |
| TspMI | CCCGGG | 1 cut(s) | 150 |
| TspRI | CASTG | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 2 cut(s) | 518, 525 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 644 |
| XmaI | CCCGGG | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 81, 96 |