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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 488, 611 |
| AccII | CGCG | 3 cut(s) | 78, 103, 576 |
| AclWI | GGATC | 2 cut(s) | 171, 190 |
| AcoI | YGGCCR | 3 cut(s) | 93, 174, 366 |
| AcuI | CTGAAG | 2 cut(s) | 179, 504 |
| AfaI | GTAC | 2 cut(s) | 283, 450 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 642 |
| AgsI | TTSAA | 1 cut(s) | 310 |
| AjiI | CACGTC | 1 cut(s) | 109 |
| AluBI | AGCT | 4 cut(s) | 85, 115, 136, 660 |
| AluI | AGCT | 4 cut(s) | 85, 115, 136, 660 |
| Alw26I | GTCTC | 3 cut(s) | 2, 99, 574 |
| AlwI | GGATC | 2 cut(s) | 171, 190 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| Ama87I | CYCGRG | 2 cut(s) | 455, 496 |
| AoxI | GGCC | 6 cut(s) | 63, 93, 174, 354, 366, 431 |
| ApeKI | GCWGC | 3 cut(s) | 37, 590, 698 |
| AspLEI | GCGC | 2 cut(s) | 103, 578 |
| AspS9I | GGNCC | 2 cut(s) | 431, 645 |
| AsuC2I | CCSGG | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 4 cut(s) | 194, 244, 361, 518 |
| AvaI | CYCGRG | 2 cut(s) | 455, 496 |
| AvaII | GGWCC | 1 cut(s) | 645 |
| BalI | TGGCCA | 1 cut(s) | 368 |
| BanI | GGYRCC | 2 cut(s) | 488, 611 |
| BbsI | GAAGAC | 1 cut(s) | 612 |
| BbvCI | CCTCAGC | 2 cut(s) | 228, 714 |
| BbvI | GCAGC | 3 cut(s) | 49, 577, 685 |
| BceAI | ACGGC | 3 cut(s) | 80, 418, 625 |
| BcnI | CCSGG | 1 cut(s) | 430 |
| BcoDI | GTCTC | 3 cut(s) | 2, 99, 574 |
| BfaI | CTAG | 3 cut(s) | 137, 602, 686 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 430 |
| BisI | GCNGC | 7 cut(s) | 38, 66, 174, 216, 591, 699, 702 |
| BlsI | GCNGC | 7 cut(s) | 39, 67, 175, 217, 592, 700, 703 |
| Bme1390I | CCNGG | 1 cut(s) | 430 |
| Bme18I | GGWCC | 1 cut(s) | 645 |
| BmeT110I | CYCGRG | 2 cut(s) | 455, 496 |
| BmgBI | CACGTC | 1 cut(s) | 109 |
| BmgT120I | GGNCC | 2 cut(s) | 431, 645 |
| BmiI | GGNNCC | 4 cut(s) | 471, 490, 613, 646 |
| BmrFI | CCNGG | 1 cut(s) | 430 |
| BmsI | GCATC | 3 cut(s) | 19, 61, 425 |
| BpiI | GAAGAC | 1 cut(s) | 612 |
| BpmI | CTGGAG | 1 cut(s) | 263 |
| Bpu10I | CCTNAGC | 3 cut(s) | 132, 228, 714 |
| BpuMI | CCSGG | 1 cut(s) | 430 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaI | GGTCTC | 2 cut(s) | 2, 574 |
| BsaJI | CCNNGG | 7 cut(s) | 12, 48, 76, 177, 363, 564, 640 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 642 |
| Bse1I | ACTGG | 1 cut(s) | 357 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseDI | CCNNGG | 7 cut(s) | 12, 48, 76, 177, 363, 564, 640 |
| BseGI | GGATG | 4 cut(s) | 34, 253, 416, 547 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 642 |
| BseMII | CTCAG | 4 cut(s) | 219, 551, 572, 660 |
| BseNI | ACTGG | 1 cut(s) | 357 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 3 cut(s) | 49, 577, 685 |
| BseYI | CCCAGC | 1 cut(s) | 420 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 103, 576 |
| BshFI | GGCC | 6 cut(s) | 65, 95, 176, 356, 368, 433 |
| BshNI | GGYRCC | 2 cut(s) | 488, 611 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKCI | CYCGRG | 2 cut(s) | 455, 496 |
| BsiSI | CCGG | 1 cut(s) | 429 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 642 |
| BsmAI | GTCTC | 3 cut(s) | 2, 99, 574 |
| BsmBI | CGTCTC | 1 cut(s) | 99 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 6 cut(s) | 65, 95, 176, 356, 368, 433 |
| Bso31I | GGTCTC | 2 cut(s) | 2, 574 |
| BsoBI | CYCGRG | 2 cut(s) | 455, 496 |
| Bsp1407I | TGTACA | 1 cut(s) | 448 |
| Bsp143I | GATC | 3 cut(s) | 163, 195, 339 |
| Bsp19I | CCATGG | 1 cut(s) | 363 |
| BspANI | GGCC | 6 cut(s) | 65, 95, 176, 356, 368, 433 |
| BspCNI | CTCAG | 4 cut(s) | 220, 550, 571, 661 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspFNI | CGCG | 3 cut(s) | 78, 103, 576 |
| BspLI | GGNNCC | 4 cut(s) | 471, 490, 613, 646 |
| BspPI | GGATC | 2 cut(s) | 171, 190 |
| BspT107I | GGYRCC | 2 cut(s) | 488, 611 |
| BspTNI | GGTCTC | 2 cut(s) | 2, 574 |
| BsrGI | TGTACA | 1 cut(s) | 448 |
| BsrI | ACTGG | 1 cut(s) | 357 |
| BssECI | CCNNGG | 7 cut(s) | 12, 48, 76, 177, 363, 564, 640 |
| BssMI | GATC | 3 cut(s) | 163, 195, 339 |
| BssT1I | CCWWGG | 4 cut(s) | 12, 48, 177, 363 |
| Bst4CI | ACNGT | 3 cut(s) | 206, 298, 616 |
| Bst6I | CTCTTC | 1 cut(s) | 230 |
| BstAUI | TGTACA | 1 cut(s) | 448 |
| BstC8I | GCNNGC | 3 cut(s) | 76, 426, 580 |
| BstDEI | CTNAG | 6 cut(s) | 132, 228, 537, 558, 669, 714 |
| BstDSI | CCRYGG | 3 cut(s) | 76, 363, 640 |
| BstF5I | GGATG | 4 cut(s) | 34, 253, 416, 547 |
| BstFNI | CGCG | 3 cut(s) | 78, 103, 576 |
| BstHHI | GCGC | 2 cut(s) | 103, 578 |
| BstKTI | GATC | 3 cut(s) | 166, 198, 342 |
| BstMAI | GTCTC | 3 cut(s) | 2, 99, 574 |
| BstMBI | GATC | 3 cut(s) | 163, 195, 339 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 71, 224, 353, 430, 488 |
| BstSCI | CCNGG | 1 cut(s) | 428 |
| BstUI | CGCG | 3 cut(s) | 78, 103, 576 |
| BstV1I | GCAGC | 3 cut(s) | 49, 577, 685 |
| BstV2I | GAAGAC | 1 cut(s) | 612 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 364 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuRI | GGCC | 6 cut(s) | 65, 95, 176, 356, 368, 433 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgI | CCRYGG | 3 cut(s) | 76, 363, 640 |
| BtrI | CACGTC | 1 cut(s) | 109 |
| BtsCI | GGATG | 4 cut(s) | 34, 253, 416, 547 |
| BtsIMutI | CAGTG | 3 cut(s) | 294, 364, 545 |
| Cac8I | GCNNGC | 3 cut(s) | 76, 426, 580 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CfoI | GCGC | 2 cut(s) | 103, 578 |
| Cfr13I | GGNCC | 2 cut(s) | 431, 645 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| CseI | GACGC | 3 cut(s) | 29, 276, 509 |
| Csp6I | GTAC | 2 cut(s) | 282, 449 |
| CviAII | CATG | 4 cut(s) | 125, 148, 337, 364 |
| CviQI | GTAC | 2 cut(s) | 282, 449 |
| DdeI | CTNAG | 6 cut(s) | 132, 228, 537, 558, 669, 714 |
| DpnI | GATC | 3 cut(s) | 165, 197, 341 |
| DpnII | GATC | 3 cut(s) | 163, 195, 339 |
| EaeI | YGGCCR | 3 cut(s) | 93, 174, 366 |
| Eam1104I | CTCTTC | 1 cut(s) | 230 |
| EarI | CTCTTC | 1 cut(s) | 230 |
| EciI | GGCGGA | 3 cut(s) | 20, 41, 335 |
| Eco130I | CCWWGG | 4 cut(s) | 12, 48, 177, 363 |
| Eco31I | GGTCTC | 2 cut(s) | 2, 574 |
| Eco47I | GGWCC | 1 cut(s) | 645 |
| Eco57I | CTGAAG | 2 cut(s) | 179, 504 |
| Eco88I | CYCGRG | 2 cut(s) | 455, 496 |
| EcoT14I | CCWWGG | 4 cut(s) | 12, 48, 177, 363 |
| ErhI | CCWWGG | 4 cut(s) | 12, 48, 177, 363 |
| Esp3I | CGTCTC | 1 cut(s) | 99 |
| FaeI | CATG | 4 cut(s) | 128, 151, 340, 367 |
| FaiI | YATR | 8 cut(s) | 126, 149, 338, 365, 465, 518, 654, 721 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 4 cut(s) | 124, 147, 336, 363 |
| FauI | CCCGC | 3 cut(s) | 83, 581, 686 |
| Fnu4HI | GCNGC | 7 cut(s) | 38, 66, 174, 216, 591, 699, 702 |
| FokI | GGATG | 4 cut(s) | 41, 260, 403, 534 |
| Fsp4HI | GCNGC | 7 cut(s) | 38, 66, 174, 216, 591, 699, 702 |
| FspBI | CTAG | 3 cut(s) | 137, 602, 686 |
| GlaI | GCGC | 2 cut(s) | 102, 577 |
| GluI | GCNGC | 7 cut(s) | 38, 66, 174, 216, 591, 699, 702 |
| GsaI | CCCAGC | 1 cut(s) | 424 |
| GsuI | CTGGAG | 1 cut(s) | 263 |
| HaeIII | GGCC | 6 cut(s) | 65, 95, 176, 356, 368, 433 |
| HapII | CCGG | 1 cut(s) | 429 |
| HgaI | GACGC | 3 cut(s) | 29, 276, 509 |
| HhaI | GCGC | 2 cut(s) | 103, 578 |
| Hin1II | CATG | 4 cut(s) | 128, 151, 340, 367 |
| Hin6I | GCGC | 2 cut(s) | 101, 576 |
| HinP1I | GCGC | 2 cut(s) | 101, 576 |
| HinfI | GANTC | 5 cut(s) | 209, 385, 533, 544, 628 |
| HpaII | CCGG | 1 cut(s) | 429 |
| HphI | GGTGA | 4 cut(s) | 194, 244, 361, 518 |
| Hpy166II | GTNNAC | 1 cut(s) | 543 |
| Hpy188I | TCNGA | 4 cut(s) | 390, 565, 649, 670 |
| Hpy8I | GTNNAC | 1 cut(s) | 543 |
| Hpy99I | CGWCG | 1 cut(s) | 479 |
| HpyAV | CCTTC | 5 cut(s) | 154, 209, 346, 385, 479 |
| HpyCH4III | ACNGT | 3 cut(s) | 206, 298, 616 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 71, 224, 353, 430, 488 |
| HpyF3I | CTNAG | 6 cut(s) | 132, 228, 537, 558, 669, 714 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| Hsp92II | CATG | 4 cut(s) | 128, 151, 340, 367 |
| HspAI | GCGC | 2 cut(s) | 101, 576 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| Kzo9I | GATC | 3 cut(s) | 163, 195, 339 |
| LmnI | GCTCC | 2 cut(s) | 34, 112 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 577, 685 |
| LweI | GCATC | 3 cut(s) | 19, 61, 425 |
| MaeI | CTAG | 3 cut(s) | 137, 602, 686 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MalI | GATC | 3 cut(s) | 165, 197, 341 |
| MboI | GATC | 3 cut(s) | 163, 195, 339 |
| MboII | GAAGA | 3 cut(s) | 247, 542, 617 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MlsI | TGGCCA | 1 cut(s) | 368 |
| MluNI | TGGCCA | 1 cut(s) | 368 |
| MlyI | GAGTC | 2 cut(s) | 538, 637 |
| MmeI | TCCRAC | 1 cut(s) | 672 |
| Mox20I | TGGCCA | 1 cut(s) | 368 |
| MscI | TGGCCA | 1 cut(s) | 368 |
| MseI | TTAA | 1 cut(s) | 620 |
| Msp20I | TGGCCA | 1 cut(s) | 368 |
| MspA1I | CMGCKG | 3 cut(s) | 68, 78, 704 |
| MspI | CCGG | 1 cut(s) | 429 |
| MspR9I | CCNGG | 1 cut(s) | 430 |
| MvnI | CGCG | 3 cut(s) | 78, 103, 576 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 71, 224, 353, 430, 488 |
| NciI | CCSGG | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 363 |
| NdeII | GATC | 3 cut(s) | 163, 195, 339 |
| NlaIII | CATG | 4 cut(s) | 128, 151, 340, 367 |
| NlaIV | GGNNCC | 4 cut(s) | 471, 490, 613, 646 |
| NmeAIII | GCCGAG | 1 cut(s) | 651 |
| PfeI | GAWTC | 3 cut(s) | 209, 385, 533 |
| PflFI | GACNNNGTC | 1 cut(s) | 125 |
| PkrI | GCNGC | 7 cut(s) | 39, 67, 175, 217, 592, 700, 703 |
| PleI | GAGTC | 2 cut(s) | 538, 636 |
| PpsI | GAGTC | 2 cut(s) | 538, 636 |
| PspFI | CCCAGC | 1 cut(s) | 420 |
| PspN4I | GGNNCC | 4 cut(s) | 471, 490, 613, 646 |
| PspPI | GGNCC | 2 cut(s) | 431, 645 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PsyI | GACNNNGTC | 1 cut(s) | 125 |
| RsaI | GTAC | 2 cut(s) | 283, 450 |
| RsaNI | GTAC | 2 cut(s) | 282, 449 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 620 |
| SatI | GCNGC | 7 cut(s) | 38, 66, 174, 216, 591, 699, 702 |
| Sau3AI | GATC | 3 cut(s) | 163, 195, 339 |
| Sau96I | GGNCC | 2 cut(s) | 431, 645 |
| SchI | GAGTC | 2 cut(s) | 538, 637 |
| ScrFI | CCNGG | 1 cut(s) | 430 |
| SfaNI | GCATC | 3 cut(s) | 19, 61, 425 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SinI | GGWCC | 1 cut(s) | 645 |
| SspMI | CTAG | 3 cut(s) | 137, 602, 686 |
| StyD4I | CCNGG | 1 cut(s) | 428 |
| StyI | CCWWGG | 4 cut(s) | 12, 48, 177, 363 |
| TaaI | ACNGT | 3 cut(s) | 206, 298, 616 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TaqI | TCGA | 3 cut(s) | 342, 402, 477 |
| TatI | WGTACW | 1 cut(s) | 448 |
| TauI | GCSGC | 4 cut(s) | 68, 176, 218, 704 |
| TfiI | GAWTC | 3 cut(s) | 209, 385, 533 |
| Tru1I | TTAA | 1 cut(s) | 620 |
| Tru9I | TTAA | 1 cut(s) | 620 |
| TscAI | CASTG | 3 cut(s) | 301, 364, 545 |
| TseI | GCWGC | 3 cut(s) | 37, 590, 698 |
| TspRI | CASTG | 3 cut(s) | 301, 364, 545 |
| Tth111I | GACNNNGTC | 1 cut(s) | 125 |
| VpaK11BI | GGWCC | 1 cut(s) | 645 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 19, 370 |
| XspI | CTAG | 3 cut(s) | 137, 602, 686 |