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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 280, 1166, 1202 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1212 |
| AccBSI | CCGCTC | 6 cut(s) | 266, 613, 640, 919, 931, 1476 |
| AccII | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| AcoI | YGGCCR | 2 cut(s) | 978, 1173 |
| AcuI | CTGAAG | 3 cut(s) | 407, 992, 1170 |
| AcyI | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| AfaI | GTAC | 4 cut(s) | 559, 676, 1115, 1273 |
| AflIII | ACRYGT | 1 cut(s) | 954 |
| AgeI | ACCGGT | 1 cut(s) | 8 |
| AgsI | TTSAA | 3 cut(s) | 390, 776, 1001 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1440 |
| AjiI | CACGTC | 1 cut(s) | 721 |
| AjnI | CCWGG | 6 cut(s) | 105, 747, 828, 924, 1291, 1398 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 926, 958 |
| AleI | CACNNNNGTG | 1 cut(s) | 416 |
| AluBI | AGCT | 2 cut(s) | 784, 1256 |
| AluI | AGCT | 2 cut(s) | 784, 1256 |
| Alw21I | GWGCWC | 1 cut(s) | 786 |
| Alw26I | GTCTC | 4 cut(s) | 26, 155, 1389, 1427 |
| Ama87I | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| ApaI | GGGCCC | 1 cut(s) | 490 |
| AsiGI | ACCGGT | 1 cut(s) | 8 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1005 |
| AspLEI | GCGC | 7 cut(s) | 89, 139, 172, 283, 301, 315, 1091 |
| AsuC2I | CCSGG | 6 cut(s) | 42, 127, 484, 1343, 1414, 1415 |
| AsuHPI | GGTGA | 9 cut(s) | 203, 242, 280, 346, 556, 620, 620, 1051, 1067 |
| AsuNHI | GCTAGC | 1 cut(s) | 376 |
| AvaI | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| AvaII | GGWCC | 6 cut(s) | 82, 154, 258, 922, 1295, 1458 |
| AxyI | CCTNAGG | 1 cut(s) | 525 |
| BaeGI | GKGCMC | 2 cut(s) | 490, 720 |
| BalI | TGGCCA | 1 cut(s) | 1175 |
| BanI | GGYRCC | 3 cut(s) | 280, 1166, 1202 |
| BanII | GRGCYC | 2 cut(s) | 490, 786 |
| BauI | CACGAG | 1 cut(s) | 1386 |
| Bbv12I | GWGCWC | 1 cut(s) | 786 |
| BccI | CCATC | 3 cut(s) | 988, 1214, 1415 |
| BceAI | ACGGC | 7 cut(s) | 42, 455, 668, 723, 1088, 1376, 1471 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 292, 326, 860, 894, 1212, 1246 |
| BciT130I | CCWGG | 6 cut(s) | 107, 749, 830, 926, 1293, 1400 |
| BcnI | CCSGG | 6 cut(s) | 42, 127, 484, 1343, 1414, 1415 |
| BcoDI | GTCTC | 4 cut(s) | 26, 155, 1389, 1427 |
| BfaI | CTAG | 4 cut(s) | 377, 659, 1026, 1440 |
| BfmI | CTRYAG | 2 cut(s) | 806, 1190 |
| BfoI | RGCGCY | 4 cut(s) | 140, 173, 284, 302 |
| BlpI | GCTNAGC | 2 cut(s) | 173, 519 |
| BmcAI | AGTACT | 1 cut(s) | 1273 |
| Bme18I | GGWCC | 6 cut(s) | 82, 154, 258, 922, 1295, 1458 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1440 |
| BmeT110I | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| BmgBI | CACGTC | 1 cut(s) | 721 |
| BmrI | ACTGGG | 2 cut(s) | 1222, 1366 |
| BmsI | GCATC | 2 cut(s) | 868, 1232 |
| BmtI | GCTAGC | 1 cut(s) | 380 |
| BmuI | ACTGGG | 2 cut(s) | 1222, 1366 |
| BpmI | CTGGAG | 2 cut(s) | 128, 947 |
| Bpu10I | CCTNAGC | 2 cut(s) | 785, 984 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 173, 519 |
| BpuMI | CCSGG | 6 cut(s) | 42, 127, 484, 1343, 1414, 1415 |
| Bsa29I | ATCGAT | 1 cut(s) | 1226 |
| BsaHI | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| BsaI | GGTCTC | 1 cut(s) | 1427 |
| BsaWI | WCCGGW | 3 cut(s) | 8, 260, 1297 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 608, 638 |
| Bse118I | RCCGGY | 2 cut(s) | 8, 1163 |
| Bse1I | ACTGG | 3 cut(s) | 178, 1217, 1372 |
| Bse21I | CCTNAGG | 1 cut(s) | 525 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 1149 |
| BseBI | CCWGG | 6 cut(s) | 107, 749, 830, 926, 1293, 1400 |
| BseCI | ATCGAT | 1 cut(s) | 1226 |
| BseGI | GGATG | 2 cut(s) | 1426, 1480 |
| BseMI | GCAATG | 2 cut(s) | 84, 1149 |
| BseMII | CTCAG | 6 cut(s) | 164, 516, 533, 799, 1061, 1370 |
| BseNI | ACTGG | 3 cut(s) | 178, 1217, 1372 |
| BseRI | GAGGAG | 2 cut(s) | 476, 806 |
| BseSI | GKGCMC | 2 cut(s) | 490, 720 |
| BsgI | GTGCAG | 1 cut(s) | 341 |
| Bsh1236I | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1098, 1236 |
| BshNI | GGYRCC | 3 cut(s) | 280, 1166, 1202 |
| BshTI | ACCGGT | 1 cut(s) | 8 |
| BshVI | ATCGAT | 1 cut(s) | 1226 |
| BsiEI | CGRYCG | 2 cut(s) | 1098, 1236 |
| BsiHKAI | GWGCWC | 1 cut(s) | 786 |
| BsiHKCI | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| BsiSI | CCGG | 9 cut(s) | 9, 41, 126, 261, 483, 1164, 1298, 1343, 1414 |
| BslFI | GGGAC | 5 cut(s) | 271, 827, 935, 943, 1428 |
| BsmAI | GTCTC | 4 cut(s) | 26, 155, 1389, 1427 |
| BsmBI | CGTCTC | 1 cut(s) | 155 |
| BsmFI | GGGAC | 5 cut(s) | 271, 827, 935, 943, 1428 |
| Bso31I | GGTCTC | 1 cut(s) | 1427 |
| BsoBI | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| Bsp120I | GGGCCC | 1 cut(s) | 486 |
| Bsp1286I | GDGCHC | 3 cut(s) | 490, 720, 786 |
| Bsp143I | GATC | 1 cut(s) | 565 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 173, 519 |
| Bsp19I | CCATGG | 1 cut(s) | 1170 |
| BspCNI | CTCAG | 6 cut(s) | 165, 517, 532, 798, 1062, 1369 |
| BspDI | ATCGAT | 1 cut(s) | 1226 |
| BspFNI | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| BspMAI | CTGCAG | 1 cut(s) | 1194 |
| BspOI | GCTAGC | 1 cut(s) | 380 |
| BspT107I | GGYRCC | 3 cut(s) | 280, 1166, 1202 |
| BspTNI | GGTCTC | 1 cut(s) | 1427 |
| BsrBI | CCGCTC | 6 cut(s) | 266, 613, 640, 919, 931, 1476 |
| BsrDI | GCAATG | 2 cut(s) | 84, 1149 |
| BsrFI | RCCGGY | 2 cut(s) | 8, 1163 |
| BsrI | ACTGG | 3 cut(s) | 178, 1217, 1372 |
| BssAI | RCCGGY | 2 cut(s) | 8, 1163 |
| BssMI | GATC | 1 cut(s) | 565 |
| BssNI | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| BssSI | CACGAG | 1 cut(s) | 1386 |
| BssT1I | CCWWGG | 1 cut(s) | 1170 |
| Bst2BI | CACGAG | 1 cut(s) | 1386 |
| Bst2UI | CCWGG | 6 cut(s) | 107, 749, 830, 926, 1293, 1400 |
| Bst4CI | ACNGT | 4 cut(s) | 400, 608, 942, 1047 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstACI | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| BstDEI | CTNAG | 7 cut(s) | 173, 519, 525, 785, 984, 1070, 1356 |
| BstDSI | CCRYGG | 6 cut(s) | 192, 284, 471, 892, 1104, 1170 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 494 |
| BstF5I | GGATG | 2 cut(s) | 1426, 1480 |
| BstFNI | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| BstH2I | RGCGCY | 4 cut(s) | 140, 173, 284, 302 |
| BstHHI | GCGC | 7 cut(s) | 89, 139, 172, 283, 301, 315, 1091 |
| BstKTI | GATC | 1 cut(s) | 568 |
| BstMAI | GTCTC | 4 cut(s) | 26, 155, 1389, 1427 |
| BstMBI | GATC | 1 cut(s) | 565 |
| BstMCI | CGRYCG | 2 cut(s) | 1098, 1236 |
| BstNI | CCWGG | 6 cut(s) | 107, 749, 830, 926, 1293, 1400 |
| BstNSI | RCATGY | 1 cut(s) | 958 |
| BstSFI | CTRYAG | 2 cut(s) | 806, 1190 |
| BstSLI | GKGCMC | 2 cut(s) | 490, 720 |
| BstUI | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| Bsu15I | ATCGAT | 1 cut(s) | 1226 |
| Bsu36I | CCTNAGG | 1 cut(s) | 525 |
| BsuTUI | ATCGAT | 1 cut(s) | 1226 |
| BtgI | CCRYGG | 6 cut(s) | 192, 284, 471, 892, 1104, 1170 |
| BtrI | CACGTC | 1 cut(s) | 721 |
| BtsCI | GGATG | 2 cut(s) | 1426, 1480 |
| BtsI | GCAGTG | 1 cut(s) | 339 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| CfoI | GCGC | 7 cut(s) | 89, 139, 172, 283, 301, 315, 1091 |
| Cfr10I | RCCGGY | 2 cut(s) | 8, 1163 |
| Cfr42I | CCGCGG | 1 cut(s) | 287 |
| Cfr9I | CCCGGG | 1 cut(s) | 1413 |
| ClaI | ATCGAT | 1 cut(s) | 1226 |
| CseI | GACGC | 7 cut(s) | 71, 172, 326, 476, 744, 864, 896 |
| Csp6I | GTAC | 4 cut(s) | 558, 675, 1114, 1272 |
| CspAI | ACCGGT | 1 cut(s) | 8 |
| CviAII | CATG | 5 cut(s) | 115, 307, 737, 955, 1171 |
| CviQI | GTAC | 4 cut(s) | 558, 675, 1114, 1272 |
| DdeI | CTNAG | 7 cut(s) | 173, 519, 525, 785, 984, 1070, 1356 |
| DinI | GGCGCC | 1 cut(s) | 282 |
| DpnI | GATC | 1 cut(s) | 567 |
| DpnII | GATC | 1 cut(s) | 565 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1440 |
| EaeI | YGGCCR | 2 cut(s) | 978, 1173 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1440 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| EciI | GGCGGA | 6 cut(s) | 27, 1142, 1248, 1350, 1433, 1473 |
| Ecl136II | GAGCTC | 1 cut(s) | 784 |
| Eco130I | CCWWGG | 1 cut(s) | 1170 |
| Eco147I | AGGCCT | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 2 cut(s) | 490, 786 |
| Eco31I | GGTCTC | 1 cut(s) | 1427 |
| Eco47I | GGWCC | 6 cut(s) | 82, 154, 258, 922, 1295, 1458 |
| Eco53kI | GAGCTC | 1 cut(s) | 784 |
| Eco57I | CTGAAG | 3 cut(s) | 407, 992, 1170 |
| Eco81I | CCTNAGG | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 3 cut(s) | 491, 1413, 1452 |
| EcoICRI | GAGCTC | 1 cut(s) | 784 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 494 |
| EcoO109I | RGGNCCY | 3 cut(s) | 486, 487, 922 |
| EcoRII | CCWGG | 6 cut(s) | 105, 747, 828, 924, 1291, 1398 |
| EcoT14I | CCWWGG | 1 cut(s) | 1170 |
| EcoT38I | GRGCYC | 2 cut(s) | 490, 786 |
| EgeI | GGCGCC | 1 cut(s) | 282 |
| EheI | GGCGCC | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 1170 |
| Esp3I | CGTCTC | 1 cut(s) | 155 |
| FaeI | CATG | 5 cut(s) | 118, 310, 740, 958, 1174 |
| FaiI | YATR | 9 cut(s) | 22, 24, 116, 120, 308, 359, 738, 956, 1172 |
| FaqI | GGGAC | 5 cut(s) | 271, 827, 935, 943, 1428 |
| FatI | CATG | 5 cut(s) | 114, 306, 736, 954, 1170 |
| FokI | GGATG | 2 cut(s) | 1433, 1467 |
| FriOI | GRGCYC | 2 cut(s) | 490, 786 |
| FspBI | CTAG | 4 cut(s) | 377, 659, 1026, 1440 |
| GlaI | GCGC | 7 cut(s) | 88, 138, 171, 282, 300, 314, 1090 |
| GsuI | CTGGAG | 2 cut(s) | 128, 947 |
| HaeII | RGCGCY | 4 cut(s) | 140, 173, 284, 302 |
| HapII | CCGG | 9 cut(s) | 9, 41, 126, 261, 483, 1164, 1298, 1343, 1414 |
| HgaI | GACGC | 7 cut(s) | 71, 172, 326, 476, 744, 864, 896 |
| HhaI | GCGC | 7 cut(s) | 89, 139, 172, 283, 301, 315, 1091 |
| Hin1I | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| Hin1II | CATG | 5 cut(s) | 118, 310, 740, 958, 1174 |
| Hin6I | GCGC | 7 cut(s) | 87, 137, 170, 281, 299, 313, 1089 |
| HinP1I | GCGC | 7 cut(s) | 87, 137, 170, 281, 299, 313, 1089 |
| HincII | GTYRAC | 1 cut(s) | 688 |
| HindII | GTYRAC | 1 cut(s) | 688 |
| HinfI | GANTC | 7 cut(s) | 34, 446, 572, 1016, 1109, 1338, 1363 |
| HpaII | CCGG | 9 cut(s) | 9, 41, 126, 261, 483, 1164, 1298, 1343, 1414 |
| HphI | GGTGA | 9 cut(s) | 203, 242, 280, 346, 556, 620, 620, 1051, 1067 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 688 |
| Hpy188I | TCNGA | 4 cut(s) | 184, 600, 1378, 1462 |
| Hpy188III | TCNNGA | 1 cut(s) | 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 688 |
| Hpy99I | CGWCG | 3 cut(s) | 404, 725, 858 |
| HpyAV | CCTTC | 7 cut(s) | 322, 499, 709, 1016, 1153, 1192, 1213 |
| HpyCH4III | ACNGT | 4 cut(s) | 400, 608, 942, 1047 |
| HpyCH4IV | ACGT | 1 cut(s) | 720 |
| HpyCH4V | TGCA | 3 cut(s) | 322, 736, 1192 |
| HpyF3I | CTNAG | 7 cut(s) | 173, 519, 525, 785, 984, 1070, 1356 |
| HpySE526I | ACGT | 1 cut(s) | 720 |
| Hsp92I | GRCGYC | 4 cut(s) | 281, 468, 755, 888 |
| Hsp92II | CATG | 5 cut(s) | 118, 310, 740, 958, 1174 |
| HspAI | GCGC | 7 cut(s) | 87, 137, 170, 281, 299, 313, 1089 |
| KasI | GGCGCC | 1 cut(s) | 280 |
| KspI | CCGCGG | 1 cut(s) | 287 |
| Kzo9I | GATC | 1 cut(s) | 565 |
| LmnI | GCTCC | 8 cut(s) | 263, 370, 535, 781, 928, 946, 1083, 1261 |
| LweI | GCATC | 2 cut(s) | 868, 1232 |
| MaeI | CTAG | 4 cut(s) | 377, 659, 1026, 1440 |
| MaeII | ACGT | 1 cut(s) | 720 |
| MaeIII | GTNAC | 3 cut(s) | 59, 230, 352 |
| MalI | GATC | 1 cut(s) | 567 |
| MbiI | CCGCTC | 6 cut(s) | 266, 613, 640, 919, 931, 1476 |
| MboI | GATC | 1 cut(s) | 565 |
| MboII | GAAGA | 4 cut(s) | 337, 470, 514, 1261 |
| MhlI | GDGCHC | 3 cut(s) | 490, 720, 786 |
| MlsI | TGGCCA | 1 cut(s) | 1175 |
| MluNI | TGGCCA | 1 cut(s) | 1175 |
| Mly113I | GGCGCC | 1 cut(s) | 281 |
| MlyI | GAGTC | 6 cut(s) | 28, 566, 1025, 1118, 1332, 1357 |
| MmeI | TCCRAC | 4 cut(s) | 348, 924, 1029, 1485 |
| Mox20I | TGGCCA | 1 cut(s) | 1175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1005 |
| MscI | TGGCCA | 1 cut(s) | 1175 |
| MseI | TTAA | 1 cut(s) | 1302 |
| MslI | CAYNNNNRTG | 1 cut(s) | 416 |
| Msp20I | TGGCCA | 1 cut(s) | 1175 |
| MspA1I | CMGCKG | 5 cut(s) | 286, 344, 453, 1012, 1360 |
| MspI | CCGG | 9 cut(s) | 9, 41, 126, 261, 483, 1164, 1298, 1343, 1414 |
| MvaI | CCWGG | 6 cut(s) | 107, 749, 830, 926, 1293, 1400 |
| MvnI | CGCG | 5 cut(s) | 87, 286, 315, 415, 1089 |
| NarI | GGCGCC | 1 cut(s) | 281 |
| NciI | CCSGG | 6 cut(s) | 42, 127, 484, 1343, 1414, 1415 |
| NcoI | CCATGG | 1 cut(s) | 1170 |
| NdeII | GATC | 1 cut(s) | 565 |
| NheI | GCTAGC | 1 cut(s) | 376 |
| NlaIII | CATG | 5 cut(s) | 118, 310, 740, 958, 1174 |
| NmeAIII | GCCGAG | 2 cut(s) | 1060, 1102 |
| NmuCI | GTSAC | 3 cut(s) | 59, 230, 352 |
| NspI | RCATGY | 1 cut(s) | 958 |
| OliI | CACNNNNGTG | 1 cut(s) | 416 |
| PaeR7I | CTCGAG | 1 cut(s) | 491 |
| PceI | AGGCCT | 1 cut(s) | 394 |
| PciI | ACATGT | 1 cut(s) | 954 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1005 |
| PfeI | GAWTC | 1 cut(s) | 446 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1212 |
| PfoI | TCCNGGA | 2 cut(s) | 105, 1341 |
| PinAI | ACCGGT | 1 cut(s) | 8 |
| PleI | GAGTC | 6 cut(s) | 28, 566, 1024, 1117, 1332, 1357 |
| PluTI | GGCGCC | 1 cut(s) | 284 |
| PpsI | GAGTC | 6 cut(s) | 28, 566, 1024, 1117, 1332, 1357 |
| PpuMI | RGGWCCY | 1 cut(s) | 922 |
| PscI | ACATGT | 1 cut(s) | 954 |
| Psp124BI | GAGCTC | 1 cut(s) | 786 |
| Psp5II | RGGWCCY | 1 cut(s) | 922 |
| Psp6I | CCWGG | 6 cut(s) | 105, 747, 828, 924, 1291, 1398 |
| PspGI | CCWGG | 6 cut(s) | 105, 747, 828, 924, 1291, 1398 |
| PspOMI | GGGCCC | 1 cut(s) | 486 |
| PspPPI | RGGWCCY | 1 cut(s) | 922 |
| PspXI | VCTCGAGB | 1 cut(s) | 491 |
| PstI | CTGCAG | 1 cut(s) | 1194 |
| RsaI | GTAC | 4 cut(s) | 559, 676, 1115, 1273 |
| RsaNI | GTAC | 4 cut(s) | 558, 675, 1114, 1272 |
| RseI | CAYNNNNRTG | 1 cut(s) | 416 |
| SacI | GAGCTC | 1 cut(s) | 786 |
| SacII | CCGCGG | 1 cut(s) | 287 |
| SaqAI | TTAA | 1 cut(s) | 1302 |
| Sau3AI | GATC | 1 cut(s) | 565 |
| ScaI | AGTACT | 1 cut(s) | 1273 |
| SchI | GAGTC | 6 cut(s) | 28, 566, 1025, 1118, 1332, 1357 |
| SduI | GDGCHC | 3 cut(s) | 490, 720, 786 |
| SfaNI | GCATC | 2 cut(s) | 868, 1232 |
| SfcI | CTRYAG | 2 cut(s) | 806, 1190 |
| SfoI | GGCGCC | 1 cut(s) | 282 |
| Sfr274I | CTCGAG | 1 cut(s) | 491 |
| Sfr303I | CCGCGG | 1 cut(s) | 287 |
| SgrBI | CCGCGG | 1 cut(s) | 287 |
| SinI | GGWCC | 6 cut(s) | 82, 154, 258, 922, 1295, 1458 |
| SlaI | CTCGAG | 1 cut(s) | 491 |
| SmaI | CCCGGG | 1 cut(s) | 1415 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 416 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| SseBI | AGGCCT | 1 cut(s) | 394 |
| SspDI | GGCGCC | 1 cut(s) | 280 |
| SspMI | CTAG | 4 cut(s) | 377, 659, 1026, 1440 |
| SstI | GAGCTC | 1 cut(s) | 786 |
| StuI | AGGCCT | 1 cut(s) | 394 |
| StyI | CCWWGG | 1 cut(s) | 1170 |
| TaaI | ACNGT | 4 cut(s) | 400, 608, 942, 1047 |
| TaiI | ACGT | 1 cut(s) | 723 |
| TaqI | TCGA | 5 cut(s) | 96, 492, 849, 1209, 1226 |
| TaqII | GACCGA | 1 cut(s) | 1222 |
| TatI | WGTACW | 1 cut(s) | 1271 |
| TfiI | GAWTC | 1 cut(s) | 446 |
| Tru1I | TTAA | 1 cut(s) | 1302 |
| Tru9I | TTAA | 1 cut(s) | 1302 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseFI | GTSAC | 3 cut(s) | 59, 230, 352 |
| Tsp45I | GTSAC | 3 cut(s) | 59, 230, 352 |
| TspDTI | ATGAA | 1 cut(s) | 753 |
| TspMI | CCCGGG | 1 cut(s) | 1413 |
| TspRI | CASTG | 1 cut(s) | 339 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1212 |
| VpaK11BI | GGWCC | 6 cut(s) | 82, 154, 258, 922, 1295, 1458 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 494 |
| XceI | RCATGY | 1 cut(s) | 958 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 221, 364, 1177 |
| XhoI | CTCGAG | 1 cut(s) | 491 |
| XmaI | CCCGGG | 1 cut(s) | 1413 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1005 |
| XspI | CTAG | 4 cut(s) | 377, 659, 1026, 1440 |
| ZrmI | AGTACT | 1 cut(s) | 1273 |