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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 450 |
| AcoI | YGGCCR | 3 cut(s) | 157, 267, 342 |
| AfaI | GTAC | 2 cut(s) | 381, 493 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 176, 177, 276, 394 |
| AgsI | TTSAA | 2 cut(s) | 469, 477 |
| AjiI | CACGTC | 1 cut(s) | 283 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AluBI | AGCT | 2 cut(s) | 260, 409 |
| AluI | AGCT | 2 cut(s) | 260, 409 |
| Alw26I | GTCTC | 2 cut(s) | 228, 307 |
| AoxI | GGCC | 3 cut(s) | 157, 267, 342 |
| ApeKI | GCWGC | 2 cut(s) | 201, 242 |
| AspLEI | GCGC | 2 cut(s) | 220, 452 |
| AspS9I | GGNCC | 3 cut(s) | 4, 77, 445 |
| AsuHPI | GGTGA | 2 cut(s) | 161, 412 |
| AvaII | GGWCC | 3 cut(s) | 4, 77, 445 |
| BalI | TGGCCA | 1 cut(s) | 269 |
| BanII | GRGCYC | 1 cut(s) | 101 |
| BbvI | GCAGC | 2 cut(s) | 188, 229 |
| BceAI | ACGGC | 6 cut(s) | 105, 172, 231, 235, 329, 446 |
| BcoDI | GTCTC | 2 cut(s) | 228, 307 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 1 cut(s) | 221 |
| BisI | GCNGC | 7 cut(s) | 58, 131, 160, 202, 243, 385, 459 |
| BlsI | GCNGC | 7 cut(s) | 59, 132, 161, 203, 244, 386, 460 |
| Bme18I | GGWCC | 3 cut(s) | 4, 77, 445 |
| BmgBI | CACGTC | 1 cut(s) | 283 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 77, 445 |
| BmiI | GGNNCC | 2 cut(s) | 79, 446 |
| BmsI | GCATC | 2 cut(s) | 142, 237 |
| BpmI | CTGGAG | 1 cut(s) | 51 |
| BpuEI | CTTGAG | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 4 cut(s) | 145, 171, 251, 324 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 24, 54, 302, 332 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 176, 177, 276, 394 |
| Bse118I | RCCGGY | 1 cut(s) | 162 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| BseDI | CCNNGG | 4 cut(s) | 145, 171, 251, 324 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 176, 177, 276, 394 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseX3I | CGGCCG | 1 cut(s) | 157 |
| BseXI | GCAGC | 2 cut(s) | 188, 229 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| Bsh1285I | CGRYCG | 2 cut(s) | 160, 484 |
| BshFI | GGCC | 3 cut(s) | 159, 269, 344 |
| BsiEI | CGRYCG | 2 cut(s) | 160, 484 |
| BsiSI | CCGG | 2 cut(s) | 113, 163 |
| BslFI | GGGAC | 2 cut(s) | 293, 458 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 176, 177, 276, 394 |
| BsmAI | GTCTC | 2 cut(s) | 228, 307 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 2 cut(s) | 293, 458 |
| BsmI | GAATGC | 1 cut(s) | 472 |
| BsnI | GGCC | 3 cut(s) | 159, 269, 344 |
| Bsp1286I | GDGCHC | 1 cut(s) | 101 |
| Bsp143I | GATC | 2 cut(s) | 15, 295 |
| Bsp19I | CCATGG | 1 cut(s) | 324 |
| BspANI | GGCC | 3 cut(s) | 159, 269, 344 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspLI | GGNNCC | 2 cut(s) | 79, 446 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrFI | RCCGGY | 1 cut(s) | 162 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssAI | RCCGGY | 1 cut(s) | 162 |
| BssECI | CCNNGG | 4 cut(s) | 145, 171, 251, 324 |
| BssMI | GATC | 2 cut(s) | 15, 295 |
| BssT1I | CCWWGG | 3 cut(s) | 145, 171, 324 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 71, 265, 482 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDSI | CCRYGG | 2 cut(s) | 251, 324 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstH2I | RGCGCY | 1 cut(s) | 221 |
| BstHHI | GCGC | 2 cut(s) | 220, 452 |
| BstKTI | GATC | 2 cut(s) | 18, 298 |
| BstMAI | GTCTC | 2 cut(s) | 228, 307 |
| BstMBI | GATC | 2 cut(s) | 15, 295 |
| BstMCI | CGRYCG | 2 cut(s) | 160, 484 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 42, 89, 127, 182, 266, 458 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstV1I | GCAGC | 2 cut(s) | 188, 229 |
| BstZI | CGGCCG | 1 cut(s) | 157 |
| BsuRI | GGCC | 3 cut(s) | 159, 269, 344 |
| BtgI | CCRYGG | 2 cut(s) | 251, 324 |
| BtgZI | GCGATG | 1 cut(s) | 260 |
| BtrI | CACGTC | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 270 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CfoI | GCGC | 2 cut(s) | 220, 452 |
| Cfr10I | RCCGGY | 1 cut(s) | 162 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 77, 445 |
| CseI | GACGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 2 cut(s) | 380, 492 |
| CviAII | CATG | 2 cut(s) | 299, 325 |
| CviJI | RGCY | 8 cut(s) | 60, 99, 159, 201, 260, 269, 344, 409 |
| CviKI_1 | RGCY | 8 cut(s) | 60, 99, 159, 201, 260, 269, 344, 409 |
| CviQI | GTAC | 2 cut(s) | 380, 492 |
| DpnI | GATC | 2 cut(s) | 17, 297 |
| DpnII | GATC | 2 cut(s) | 15, 295 |
| EaeI | YGGCCR | 3 cut(s) | 157, 267, 342 |
| EagI | CGGCCG | 1 cut(s) | 157 |
| EciI | GGCGGA | 2 cut(s) | 246, 502 |
| EclXI | CGGCCG | 1 cut(s) | 157 |
| Eco130I | CCWWGG | 3 cut(s) | 145, 171, 324 |
| Eco24I | GRGCYC | 1 cut(s) | 101 |
| Eco32I | GATATC | 1 cut(s) | 367 |
| Eco47I | GGWCC | 3 cut(s) | 4, 77, 445 |
| Eco52I | CGGCCG | 1 cut(s) | 157 |
| EcoRV | GATATC | 1 cut(s) | 367 |
| EcoT14I | CCWWGG | 3 cut(s) | 145, 171, 324 |
| EcoT22I | ATGCAT | 1 cut(s) | 47 |
| EcoT38I | GRGCYC | 1 cut(s) | 101 |
| ErhI | CCWWGG | 3 cut(s) | 145, 171, 324 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FaeI | CATG | 2 cut(s) | 302, 328 |
| FaiI | YATR | 5 cut(s) | 43, 47, 128, 300, 326 |
| FaqI | GGGAC | 2 cut(s) | 293, 458 |
| FatI | CATG | 2 cut(s) | 298, 324 |
| FauI | CCCGC | 4 cut(s) | 88, 169, 270, 366 |
| Fnu4HI | GCNGC | 7 cut(s) | 58, 131, 160, 202, 243, 385, 459 |
| FriOI | GRGCYC | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 7 cut(s) | 58, 131, 160, 202, 243, 385, 459 |
| GlaI | GCGC | 2 cut(s) | 219, 451 |
| GluI | GCNGC | 7 cut(s) | 58, 131, 160, 202, 243, 385, 459 |
| GsuI | CTGGAG | 1 cut(s) | 51 |
| HaeII | RGCGCY | 1 cut(s) | 221 |
| HaeIII | GGCC | 3 cut(s) | 159, 269, 344 |
| HapII | CCGG | 2 cut(s) | 113, 163 |
| HgaI | GACGC | 1 cut(s) | 248 |
| HhaI | GCGC | 2 cut(s) | 220, 452 |
| Hin1II | CATG | 2 cut(s) | 302, 328 |
| Hin6I | GCGC | 2 cut(s) | 218, 450 |
| HinP1I | GCGC | 2 cut(s) | 218, 450 |
| HpaII | CCGG | 2 cut(s) | 113, 163 |
| HphI | GGTGA | 2 cut(s) | 161, 412 |
| Hpy166II | GTNNAC | 1 cut(s) | 77 |
| Hpy188III | TCNNGA | 1 cut(s) | 430 |
| Hpy8I | GTNNAC | 1 cut(s) | 77 |
| Hpy99I | CGWCG | 3 cut(s) | 110, 242, 350 |
| HpyAV | CCTTC | 3 cut(s) | 386, 407, 434 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 71, 265, 482 |
| HpyCH4IV | ACGT | 2 cut(s) | 108, 282 |
| HpyCH4V | TGCA | 1 cut(s) | 45 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 42, 89, 127, 182, 266, 458 |
| HpySE526I | ACGT | 2 cut(s) | 108, 282 |
| Hsp92II | CATG | 2 cut(s) | 302, 328 |
| HspAI | GCGC | 2 cut(s) | 218, 450 |
| Kzo9I | GATC | 2 cut(s) | 15, 295 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 5 cut(s) | 15, 126, 176, 355, 395 |
| Lsp1109I | GCAGC | 2 cut(s) | 188, 229 |
| LweI | GCATC | 2 cut(s) | 142, 237 |
| MaeII | ACGT | 2 cut(s) | 108, 282 |
| MalI | GATC | 2 cut(s) | 17, 297 |
| MboI | GATC | 2 cut(s) | 15, 295 |
| MhlI | GDGCHC | 1 cut(s) | 101 |
| MlsI | TGGCCA | 1 cut(s) | 269 |
| MluCI | AATT | 2 cut(s) | 22, 360 |
| MluNI | TGGCCA | 1 cut(s) | 269 |
| MnlI | CCTC | 8 cut(s) | 26, 185, 200, 325, 343, 391, 428, 437 |
| Mox20I | TGGCCA | 1 cut(s) | 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 47 |
| MscI | TGGCCA | 1 cut(s) | 269 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| Msp20I | TGGCCA | 1 cut(s) | 269 |
| MspI | CCGG | 2 cut(s) | 113, 163 |
| Mva1269I | GAATGC | 1 cut(s) | 472 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 42, 89, 127, 182, 266, 458 |
| NcoI | CCATGG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 15, 295 |
| NlaIII | CATG | 2 cut(s) | 302, 328 |
| NlaIV | GGNNCC | 2 cut(s) | 79, 446 |
| NsiI | ATGCAT | 1 cut(s) | 47 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PctI | GAATGC | 1 cut(s) | 472 |
| PkrI | GCNGC | 7 cut(s) | 59, 132, 161, 203, 244, 386, 460 |
| PspN4I | GGNNCC | 2 cut(s) | 79, 446 |
| PspPI | GGNCC | 3 cut(s) | 4, 77, 445 |
| RsaI | GTAC | 2 cut(s) | 381, 493 |
| RsaNI | GTAC | 2 cut(s) | 380, 492 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| SatI | GCNGC | 7 cut(s) | 58, 131, 160, 202, 243, 385, 459 |
| Sau3AI | GATC | 2 cut(s) | 15, 295 |
| Sau96I | GGNCC | 3 cut(s) | 4, 77, 445 |
| SduI | GDGCHC | 1 cut(s) | 101 |
| SetI | ASST | 8 cut(s) | 111, 127, 147, 211, 262, 285, 402, 411 |
| SfaNI | GCATC | 2 cut(s) | 142, 237 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SinI | GGWCC | 3 cut(s) | 4, 77, 445 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| SmlI | CTYRAG | 1 cut(s) | 430 |
| SmoI | CTYRAG | 1 cut(s) | 430 |
| Sse9I | AATT | 2 cut(s) | 22, 360 |
| StyI | CCWWGG | 3 cut(s) | 145, 171, 324 |
| TaaI | ACNGT | 4 cut(s) | 8, 71, 265, 482 |
| TaiI | ACGT | 2 cut(s) | 111, 285 |
| TaqI | TCGA | 5 cut(s) | 18, 62, 105, 348, 502 |
| TasI | AATT | 2 cut(s) | 22, 360 |
| TatI | WGTACW | 1 cut(s) | 491 |
| TauI | GCSGC | 5 cut(s) | 60, 133, 162, 387, 461 |
| TscAI | CASTG | 2 cut(s) | 34, 270 |
| TseI | GCWGC | 2 cut(s) | 201, 242 |
| TspRI | CASTG | 2 cut(s) | 34, 270 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 77, 445 |
| Zsp2I | ATGCAT | 1 cut(s) | 47 |