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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 470 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 480 |
| AccBSI | CCGCTC | 1 cut(s) | 112 |
| AccII | CGCG | 2 cut(s) | 143, 153 |
| AclI | AACGTT | 1 cut(s) | 731 |
| AclWI | GGATC | 2 cut(s) | 246, 265 |
| AcoI | YGGCCR | 3 cut(s) | 120, 246, 363 |
| AcyI | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| AfaI | GTAC | 1 cut(s) | 541 |
| AflIII | ACRYGT | 2 cut(s) | 222, 699 |
| AgsI | TTSAA | 2 cut(s) | 385, 460 |
| AjiI | CACGTC | 1 cut(s) | 106 |
| AjnI | CCWGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| AluBI | AGCT | 5 cut(s) | 43, 76, 160, 211, 515 |
| AluI | AGCT | 5 cut(s) | 43, 76, 160, 211, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 2 cut(s) | 68, 208 |
| AlwI | GGATC | 2 cut(s) | 246, 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 170 |
| Ama87I | CYCGRG | 2 cut(s) | 571, 675 |
| AoxI | GGCC | 6 cut(s) | 84, 120, 246, 363, 429, 666 |
| ApeKI | GCWGC | 5 cut(s) | 22, 277, 290, 368, 508 |
| AspLEI | GCGC | 3 cut(s) | 412, 473, 593 |
| AspS9I | GGNCC | 1 cut(s) | 667 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 335 |
| AsuNHI | GCTAGC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 2 cut(s) | 571, 675 |
| BaeGI | GKGCMC | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 122 |
| BanI | GGYRCC | 1 cut(s) | 470 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvCI | CCTCAGC | 1 cut(s) | 303 |
| BbvI | GCAGC | 5 cut(s) | 34, 277, 289, 355, 520 |
| BccI | CCATC | 1 cut(s) | 677 |
| BciT130I | CCWGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcoDI | GTCTC | 2 cut(s) | 68, 208 |
| BfaI | CTAG | 2 cut(s) | 98, 294 |
| BfmI | CTRYAG | 2 cut(s) | 233, 275 |
| BfoI | RGCGCY | 2 cut(s) | 413, 474 |
| Bme1390I | CCNGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| BmeT110I | CYCGRG | 2 cut(s) | 571, 675 |
| BmgBI | CACGTC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 667 |
| BmiI | GGNNCC | 1 cut(s) | 472 |
| BmrFI | CCNGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| BmrI | ACTGGG | 1 cut(s) | 628 |
| BmsI | GCATC | 3 cut(s) | 127, 136, 511 |
| BmtI | GCTAGC | 1 cut(s) | 101 |
| BmuI | ACTGGG | 1 cut(s) | 628 |
| BpmI | CTGGAG | 5 cut(s) | 29, 48, 50, 233, 338 |
| Bpu10I | CCTNAGC | 3 cut(s) | 303, 516, 552 |
| BsaAI | YACGTR | 1 cut(s) | 740 |
| BsaHI | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| BsaI | GGTCTC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 5 cut(s) | 87, 123, 141, 252, 337 |
| Bse118I | RCCGGY | 1 cut(s) | 529 |
| Bse1I | ACTGG | 3 cut(s) | 303, 432, 634 |
| BseBI | CCWGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| BseDI | CCNNGG | 5 cut(s) | 87, 123, 141, 252, 337 |
| BseGI | GGATG | 4 cut(s) | 151, 526, 610, 688 |
| BseMII | CTCAG | 5 cut(s) | 258, 294, 336, 408, 566 |
| BseNI | ACTGG | 3 cut(s) | 303, 432, 634 |
| BseRI | GAGGAG | 2 cut(s) | 65, 612 |
| BseSI | GKGCMC | 1 cut(s) | 439 |
| BseX3I | CGGCCG | 1 cut(s) | 363 |
| BseXI | GCAGC | 5 cut(s) | 34, 277, 289, 355, 520 |
| BseYI | CCCAGC | 3 cut(s) | 76, 612, 653 |
| BsgI | GTGCAG | 1 cut(s) | 527 |
| Bsh1236I | CGCG | 2 cut(s) | 143, 153 |
| Bsh1285I | CGRYCG | 1 cut(s) | 366 |
| BshFI | GGCC | 6 cut(s) | 86, 122, 248, 365, 431, 668 |
| BshNI | GGYRCC | 1 cut(s) | 470 |
| BsiEI | CGRYCG | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiHKCI | CYCGRG | 2 cut(s) | 571, 675 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslFI | GGGAC | 4 cut(s) | 194, 211, 355, 631 |
| BsmAI | GTCTC | 2 cut(s) | 68, 208 |
| BsmFI | GGGAC | 4 cut(s) | 194, 211, 355, 631 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 6 cut(s) | 86, 122, 248, 365, 431, 668 |
| Bso31I | GGTCTC | 1 cut(s) | 68 |
| BsoBI | CYCGRG | 2 cut(s) | 571, 675 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 439 |
| Bsp143I | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| BspANI | GGCC | 6 cut(s) | 86, 122, 248, 365, 431, 668 |
| BspCNI | CTCAG | 5 cut(s) | 259, 295, 337, 409, 565 |
| BspFNI | CGCG | 2 cut(s) | 143, 153 |
| BspLI | GGNNCC | 1 cut(s) | 472 |
| BspMAI | CTGCAG | 1 cut(s) | 279 |
| BspOI | GCTAGC | 1 cut(s) | 101 |
| BspPI | GGATC | 2 cut(s) | 246, 265 |
| BspT107I | GGYRCC | 1 cut(s) | 470 |
| BspTNI | GGTCTC | 1 cut(s) | 68 |
| BsrBI | CCGCTC | 1 cut(s) | 112 |
| BsrFI | RCCGGY | 1 cut(s) | 529 |
| BsrI | ACTGG | 3 cut(s) | 303, 432, 634 |
| BssAI | RCCGGY | 1 cut(s) | 529 |
| BssECI | CCNNGG | 5 cut(s) | 87, 123, 141, 252, 337 |
| BssMI | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| BssNI | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| BssT1I | CCWWGG | 3 cut(s) | 87, 123, 252 |
| Bst2UI | CCWGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| Bst4CI | ACNGT | 1 cut(s) | 563 |
| Bst6I | CTCTTC | 1 cut(s) | 305 |
| BstACI | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| BstBAI | YACGTR | 1 cut(s) | 740 |
| BstDEI | CTNAG | 7 cut(s) | 18, 267, 303, 345, 417, 516, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 233, 278 |
| BstF5I | GGATG | 4 cut(s) | 151, 526, 610, 688 |
| BstFNI | CGCG | 2 cut(s) | 143, 153 |
| BstH2I | RGCGCY | 2 cut(s) | 413, 474 |
| BstHHI | GCGC | 3 cut(s) | 412, 473, 593 |
| BstKTI | GATC | 5 cut(s) | 57, 199, 241, 273, 726 |
| BstMAI | GTCTC | 2 cut(s) | 68, 208 |
| BstMBI | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| BstMCI | CGRYCG | 1 cut(s) | 366 |
| BstNI | CCWGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| BstNSI | RCATGY | 2 cut(s) | 226, 703 |
| BstSCI | CCNGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| BstSFI | CTRYAG | 2 cut(s) | 233, 275 |
| BstSLI | GKGCMC | 1 cut(s) | 439 |
| BstUI | CGCG | 2 cut(s) | 143, 153 |
| BstV1I | GCAGC | 5 cut(s) | 34, 277, 289, 355, 520 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| BstZI | CGGCCG | 1 cut(s) | 363 |
| BsuRI | GGCC | 6 cut(s) | 86, 122, 248, 365, 431, 668 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| BtrI | CACGTC | 1 cut(s) | 106 |
| BtsCI | GGATG | 4 cut(s) | 151, 526, 610, 688 |
| BtsI | GCAGTG | 1 cut(s) | 171 |
| BtsIMutI | CAGTG | 2 cut(s) | 171, 439 |
| CaiI | CAGNNNCTG | 1 cut(s) | 170 |
| CciNI | GCGGCCGC | 1 cut(s) | 363 |
| CfoI | GCGC | 3 cut(s) | 412, 473, 593 |
| Cfr10I | RCCGGY | 1 cut(s) | 529 |
| Cfr13I | GGNCC | 1 cut(s) | 667 |
| Cfr42I | CCGCGG | 1 cut(s) | 144 |
| CseI | GACGC | 3 cut(s) | 3, 104, 480 |
| Csp6I | GTAC | 1 cut(s) | 540 |
| CviAII | CATG | 5 cut(s) | 184, 200, 223, 496, 700 |
| CviQI | GTAC | 1 cut(s) | 540 |
| DdeI | CTNAG | 7 cut(s) | 18, 267, 303, 345, 417, 516, 552 |
| DinI | GGCGCC | 1 cut(s) | 472 |
| DpnI | GATC | 5 cut(s) | 56, 198, 240, 272, 725 |
| DpnII | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| EaeI | YGGCCR | 3 cut(s) | 120, 246, 363 |
| EagI | CGGCCG | 1 cut(s) | 363 |
| Eam1104I | CTCTTC | 1 cut(s) | 305 |
| EarI | CTCTTC | 1 cut(s) | 305 |
| EciI | GGCGGA | 5 cut(s) | 143, 410, 516, 617, 695 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| EclXI | CGGCCG | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 3 cut(s) | 87, 123, 252 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco31I | GGTCTC | 1 cut(s) | 68 |
| Eco52I | CGGCCG | 1 cut(s) | 363 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 2 cut(s) | 571, 675 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 233, 278 |
| EcoRII | CCWGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| EcoT14I | CCWWGG | 3 cut(s) | 87, 123, 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| EgeI | GGCGCC | 1 cut(s) | 472 |
| EheI | GGCGCC | 1 cut(s) | 472 |
| ErhI | CCWWGG | 3 cut(s) | 87, 123, 252 |
| FaeI | CATG | 5 cut(s) | 187, 203, 226, 499, 703 |
| FaiI | YATR | 9 cut(s) | 185, 201, 224, 402, 497, 672, 701, 709, 711 |
| FaqI | GGGAC | 4 cut(s) | 194, 211, 355, 631 |
| FatI | CATG | 5 cut(s) | 183, 199, 222, 495, 699 |
| FauI | CCCGC | 1 cut(s) | 171 |
| FauNDI | CATATG | 1 cut(s) | 709 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| FokI | GGATG | 4 cut(s) | 158, 533, 617, 695 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| FspBI | CTAG | 2 cut(s) | 98, 294 |
| GlaI | GCGC | 3 cut(s) | 411, 472, 592 |
| GsaI | CCCAGC | 3 cut(s) | 80, 616, 657 |
| GsuI | CTGGAG | 5 cut(s) | 29, 48, 50, 233, 338 |
| HaeII | RGCGCY | 2 cut(s) | 413, 474 |
| HaeIII | GGCC | 6 cut(s) | 86, 122, 248, 365, 431, 668 |
| HapII | CCGG | 1 cut(s) | 530 |
| HgaI | GACGC | 3 cut(s) | 3, 104, 480 |
| HhaI | GCGC | 3 cut(s) | 412, 473, 593 |
| Hin1I | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| Hin1II | CATG | 5 cut(s) | 187, 203, 226, 499, 703 |
| Hin6I | GCGC | 3 cut(s) | 410, 471, 591 |
| HinP1I | GCGC | 3 cut(s) | 410, 471, 591 |
| HincII | GTYRAC | 1 cut(s) | 559 |
| HindII | GTYRAC | 1 cut(s) | 559 |
| HinfI | GANTC | 3 cut(s) | 284, 608, 619 |
| HpaI | GTTAAC | 1 cut(s) | 559 |
| HpaII | CCGG | 1 cut(s) | 530 |
| HphI | GGTGA | 2 cut(s) | 319, 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 559 |
| Hpy188I | TCNGA | 1 cut(s) | 640 |
| Hpy188III | TCNNGA | 1 cut(s) | 67 |
| Hpy8I | GTNNAC | 1 cut(s) | 559 |
| Hpy99I | CGWCG | 1 cut(s) | 506 |
| HpyAV | CCTTC | 4 cut(s) | 256, 400, 421, 481 |
| HpyCH4III | ACNGT | 1 cut(s) | 563 |
| HpyCH4IV | ACGT | 3 cut(s) | 105, 731, 739 |
| HpyCH4V | TGCA | 3 cut(s) | 277, 508, 707 |
| HpyF3I | CTNAG | 7 cut(s) | 18, 267, 303, 345, 417, 516, 552 |
| HpySE526I | ACGT | 3 cut(s) | 105, 731, 739 |
| Hsp92I | GRCGYC | 4 cut(s) | 14, 115, 471, 491 |
| Hsp92II | CATG | 5 cut(s) | 187, 203, 226, 499, 703 |
| HspAI | GCGC | 3 cut(s) | 410, 471, 591 |
| KasI | GGCGCC | 1 cut(s) | 470 |
| KroI | GCCGGC | 1 cut(s) | 529 |
| KroNI | GCCGGC | 1 cut(s) | 531 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| KspAI | GTTAAC | 1 cut(s) | 559 |
| KspI | CCGCGG | 1 cut(s) | 144 |
| Kzo9I | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| LmnI | GCTCC | 5 cut(s) | 40, 48, 109, 214, 529 |
| Lsp1109I | GCAGC | 5 cut(s) | 34, 277, 289, 355, 520 |
| LweI | GCATC | 3 cut(s) | 127, 136, 511 |
| MaeI | CTAG | 2 cut(s) | 98, 294 |
| MaeII | ACGT | 3 cut(s) | 105, 731, 739 |
| MaeIII | GTNAC | 1 cut(s) | 735 |
| MalI | GATC | 5 cut(s) | 56, 198, 240, 272, 725 |
| MbiI | CCGCTC | 1 cut(s) | 112 |
| MboI | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| MboII | GAAGA | 2 cut(s) | 271, 322 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MhlI | GDGCHC | 2 cut(s) | 45, 439 |
| MlsI | TGGCCA | 1 cut(s) | 122 |
| MluNI | TGGCCA | 1 cut(s) | 122 |
| Mly113I | GGCGCC | 1 cut(s) | 471 |
| MlyI | GAGTC | 3 cut(s) | 293, 602, 613 |
| MmeI | TCCRAC | 1 cut(s) | 618 |
| Mox20I | TGGCCA | 1 cut(s) | 122 |
| MroNI | GCCGGC | 1 cut(s) | 529 |
| MscI | TGGCCA | 1 cut(s) | 122 |
| MseI | TTAA | 1 cut(s) | 558 |
| Msp20I | TGGCCA | 1 cut(s) | 122 |
| MspA1I | CMGCKG | 4 cut(s) | 143, 178, 368, 616 |
| MspI | CCGG | 1 cut(s) | 530 |
| MspR9I | CCNGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvaI | CCWGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| MvnI | CGCG | 2 cut(s) | 143, 153 |
| NaeI | GCCGGC | 1 cut(s) | 531 |
| NarI | GGCGCC | 1 cut(s) | 471 |
| NdeI | CATATG | 1 cut(s) | 709 |
| NdeII | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| NgoMIV | GCCGGC | 1 cut(s) | 529 |
| NheI | GCTAGC | 1 cut(s) | 97 |
| NlaIII | CATG | 5 cut(s) | 187, 203, 226, 499, 703 |
| NlaIV | GGNNCC | 1 cut(s) | 472 |
| NmuCI | GTSAC | 1 cut(s) | 735 |
| NotI | GCGGCCGC | 1 cut(s) | 363 |
| NspI | RCATGY | 2 cut(s) | 226, 703 |
| PciI | ACATGT | 2 cut(s) | 222, 699 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PdiI | GCCGGC | 1 cut(s) | 531 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 480 |
| PfoI | TCCNGGA | 1 cut(s) | 45 |
| PleI | GAGTC | 3 cut(s) | 292, 602, 613 |
| PluTI | GGCGCC | 1 cut(s) | 474 |
| PpsI | GAGTC | 3 cut(s) | 292, 602, 613 |
| Ppu21I | YACGTR | 1 cut(s) | 740 |
| PscI | ACATGT | 2 cut(s) | 222, 699 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| Psp1406I | AACGTT | 1 cut(s) | 731 |
| Psp6I | CCWGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| PspFI | CCCAGC | 3 cut(s) | 76, 612, 653 |
| PspGI | CCWGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| PspN4I | GGNNCC | 1 cut(s) | 472 |
| PspPI | GGNCC | 1 cut(s) | 667 |
| PstI | CTGCAG | 1 cut(s) | 279 |
| PstNI | CAGNNNCTG | 1 cut(s) | 170 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| RsaI | GTAC | 1 cut(s) | 541 |
| RsaNI | GTAC | 1 cut(s) | 540 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SacII | CCGCGG | 1 cut(s) | 144 |
| SaqAI | TTAA | 1 cut(s) | 558 |
| Sau3AI | GATC | 5 cut(s) | 54, 196, 238, 270, 723 |
| Sau96I | GGNCC | 1 cut(s) | 667 |
| SchI | GAGTC | 3 cut(s) | 293, 602, 613 |
| ScrFI | CCNGG | 5 cut(s) | 27, 47, 338, 599, 716 |
| SduI | GDGCHC | 2 cut(s) | 45, 439 |
| SfaNI | GCATC | 3 cut(s) | 127, 136, 511 |
| SfcI | CTRYAG | 2 cut(s) | 233, 275 |
| SfoI | GGCGCC | 1 cut(s) | 472 |
| Sfr303I | CCGCGG | 1 cut(s) | 144 |
| SgrBI | CCGCGG | 1 cut(s) | 144 |
| SspDI | GGCGCC | 1 cut(s) | 470 |
| SspMI | CTAG | 2 cut(s) | 98, 294 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StyD4I | CCNGG | 5 cut(s) | 25, 45, 336, 597, 714 |
| StyI | CCWWGG | 3 cut(s) | 87, 123, 252 |
| TaaI | ACNGT | 1 cut(s) | 563 |
| TaiI | ACGT | 3 cut(s) | 108, 734, 742 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TauI | GCSGC | 9 cut(s) | 14, 115, 143, 156, 251, 365, 368, 425, 668 |
| Tru1I | TTAA | 1 cut(s) | 558 |
| Tru9I | TTAA | 1 cut(s) | 558 |
| TscAI | CASTG | 2 cut(s) | 171, 439 |
| TseFI | GTSAC | 1 cut(s) | 735 |
| TseI | GCWGC | 5 cut(s) | 22, 277, 290, 368, 508 |
| Tsp45I | GTSAC | 1 cut(s) | 735 |
| TspRI | CASTG | 2 cut(s) | 171, 439 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 480 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 233, 278 |
| XceI | RCATGY | 2 cut(s) | 226, 703 |
| XspI | CTAG | 2 cut(s) | 98, 294 |