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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 846 |
| AccB1I | GGYRCC | 5 cut(s) | 4, 522, 818, 854, 971 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 712, 864 |
| AccBSI | CCGCTC | 3 cut(s) | 307, 445, 1031 |
| AccII | CGCG | 3 cut(s) | 257, 586, 934 |
| AclWI | GGATC | 1 cut(s) | 266 |
| AcoI | YGGCCR | 2 cut(s) | 446, 1026 |
| AcuI | CTGAAG | 2 cut(s) | 668, 945 |
| AcvI | CACGTG | 1 cut(s) | 962 |
| AcyI | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| AfaI | GTAC | 1 cut(s) | 141 |
| AflIII | ACRYGT | 1 cut(s) | 959 |
| AgsI | TTSAA | 4 cut(s) | 467, 571, 796, 863 |
| AjnI | CCWGG | 2 cut(s) | 72, 945 |
| AleI | CACNNNNGTG | 1 cut(s) | 977 |
| AluBI | AGCT | 6 cut(s) | 181, 372, 409, 505, 755, 901 |
| AluI | AGCT | 6 cut(s) | 181, 372, 409, 505, 755, 901 |
| Alw26I | GTCTC | 3 cut(s) | 157, 326, 476 |
| AlwI | GGATC | 1 cut(s) | 266 |
| AoxI | GGCC | 7 cut(s) | 69, 221, 446, 657, 774, 951, 1026 |
| ApeKI | GCWGC | 7 cut(s) | 203, 206, 248, 419, 824, 1039, 1067 |
| AspLEI | GCGC | 3 cut(s) | 525, 586, 857 |
| AspS9I | GGNCC | 5 cut(s) | 70, 221, 589, 835, 952 |
| AsuC2I | CCSGG | 2 cut(s) | 214, 745 |
| AsuHPI | GGTGA | 3 cut(s) | 131, 991, 1064 |
| AsuNHI | GCTAGC | 1 cut(s) | 505 |
| AvaII | GGWCC | 2 cut(s) | 589, 835 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BanI | GGYRCC | 5 cut(s) | 4, 522, 818, 854, 971 |
| BanII | GRGCYC | 2 cut(s) | 21, 992 |
| BauI | CACGAG | 1 cut(s) | 404 |
| BbrPI | CACGTG | 1 cut(s) | 962 |
| BbvI | GCAGC | 7 cut(s) | 190, 193, 235, 431, 811, 1051, 1054 |
| BccI | CCATC | 3 cut(s) | 52, 742, 962 |
| BceAI | ACGGC | 1 cut(s) | 767 |
| BciT130I | CCWGG | 2 cut(s) | 74, 947 |
| BciVI | GTATCC | 1 cut(s) | 622 |
| BcnI | CCSGG | 2 cut(s) | 214, 745 |
| BcoDI | GTCTC | 3 cut(s) | 157, 326, 476 |
| BfaI | CTAG | 5 cut(s) | 38, 311, 416, 506, 653 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfoI | RGCGCY | 2 cut(s) | 526, 858 |
| BfuAI | ACCTGC | 1 cut(s) | 846 |
| BfuI | GTATCC | 1 cut(s) | 622 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 49 |
| BlpI | GCTNAGC | 1 cut(s) | 177 |
| Bme1390I | CCNGG | 4 cut(s) | 74, 214, 745, 947 |
| Bme18I | GGWCC | 2 cut(s) | 589, 835 |
| BmgT120I | GGNCC | 5 cut(s) | 70, 221, 589, 835, 952 |
| BmiI | GGNNCC | 9 cut(s) | 6, 222, 428, 524, 590, 820, 856, 973, 1006 |
| BmrFI | CCNGG | 4 cut(s) | 74, 214, 745, 947 |
| BmrI | ACTGGG | 1 cut(s) | 610 |
| BmsI | GCATC | 2 cut(s) | 394, 544 |
| BmtI | GCTAGC | 1 cut(s) | 509 |
| BmuI | ACTGGG | 1 cut(s) | 610 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 686, 718 |
| BpmI | CTGGAG | 1 cut(s) | 496 |
| Bpu10I | CCTNAGC | 1 cut(s) | 276 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 1 cut(s) | 614 |
| BpuMI | CCSGG | 2 cut(s) | 214, 745 |
| BsaAI | YACGTR | 1 cut(s) | 962 |
| BsaHI | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| BsaI | GGTCTC | 2 cut(s) | 326, 476 |
| BsaJI | CCNNGG | 7 cut(s) | 8, 72, 73, 213, 660, 783, 975 |
| Bse1I | ACTGG | 2 cut(s) | 194, 616 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 1 cut(s) | 579 |
| BseBI | CCWGG | 2 cut(s) | 74, 947 |
| BseDI | CCNNGG | 7 cut(s) | 8, 72, 73, 213, 660, 783, 975 |
| BseGI | GGATG | 3 cut(s) | 334, 559, 753 |
| BseMI | GCAATG | 1 cut(s) | 579 |
| BseMII | CTCAG | 6 cut(s) | 267, 443, 449, 747, 893, 911 |
| BseNI | ACTGG | 2 cut(s) | 194, 616 |
| BseRI | GAGGAG | 3 cut(s) | 473, 707, 775 |
| BseXI | GCAGC | 7 cut(s) | 190, 193, 235, 431, 811, 1051, 1054 |
| Bsh1236I | CGCG | 3 cut(s) | 257, 586, 934 |
| BshFI | GGCC | 7 cut(s) | 71, 223, 448, 659, 776, 953, 1028 |
| BshNI | GGYRCC | 5 cut(s) | 4, 522, 818, 854, 971 |
| BsiSI | CCGG | 2 cut(s) | 213, 745 |
| BslFI | GGGAC | 1 cut(s) | 602 |
| BsmAI | GTCTC | 3 cut(s) | 157, 326, 476 |
| BsmFI | GGGAC | 1 cut(s) | 602 |
| BsnI | GGCC | 7 cut(s) | 71, 223, 448, 659, 776, 953, 1028 |
| Bso31I | GGTCTC | 2 cut(s) | 326, 476 |
| Bsp1286I | GDGCHC | 2 cut(s) | 21, 992 |
| Bsp143I | GATC | 3 cut(s) | 144, 271, 513 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 177 |
| Bsp19I | CCATGG | 1 cut(s) | 975 |
| BspANI | GGCC | 7 cut(s) | 71, 223, 448, 659, 776, 953, 1028 |
| BspCNI | CTCAG | 6 cut(s) | 268, 444, 448, 748, 892, 910 |
| BspFNI | CGCG | 3 cut(s) | 257, 586, 934 |
| BspLI | GGNNCC | 9 cut(s) | 6, 222, 428, 524, 590, 820, 856, 973, 1006 |
| BspMI | ACCTGC | 1 cut(s) | 846 |
| BspOI | GCTAGC | 1 cut(s) | 509 |
| BspPI | GGATC | 1 cut(s) | 266 |
| BspT107I | GGYRCC | 5 cut(s) | 4, 522, 818, 854, 971 |
| BspTNI | GGTCTC | 2 cut(s) | 326, 476 |
| BsrBI | CCGCTC | 3 cut(s) | 307, 445, 1031 |
| BsrDI | GCAATG | 1 cut(s) | 579 |
| BsrI | ACTGG | 2 cut(s) | 194, 616 |
| BssECI | CCNNGG | 7 cut(s) | 8, 72, 73, 213, 660, 783, 975 |
| BssMI | GATC | 3 cut(s) | 144, 271, 513 |
| BssNI | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| BssSI | CACGAG | 1 cut(s) | 404 |
| BssT1I | CCWWGG | 2 cut(s) | 660, 975 |
| Bst2BI | CACGAG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 2 cut(s) | 74, 947 |
| Bst4CI | ACNGT | 3 cut(s) | 139, 337, 1052 |
| Bst6I | CTCTTC | 3 cut(s) | 86, 117, 296 |
| BstACI | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| BstBAI | YACGTR | 1 cut(s) | 962 |
| BstC8I | GCNNGC | 5 cut(s) | 54, 158, 507, 801, 936 |
| BstDEI | CTNAG | 8 cut(s) | 177, 276, 435, 452, 531, 756, 879, 897 |
| BstDSI | CCRYGG | 2 cut(s) | 783, 975 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 530, 809 |
| BstF5I | GGATG | 3 cut(s) | 334, 559, 753 |
| BstFNI | CGCG | 3 cut(s) | 257, 586, 934 |
| BstH2I | RGCGCY | 2 cut(s) | 526, 858 |
| BstHHI | GCGC | 3 cut(s) | 525, 586, 857 |
| BstKTI | GATC | 3 cut(s) | 147, 274, 516 |
| BstMAI | GTCTC | 3 cut(s) | 157, 326, 476 |
| BstMBI | GATC | 3 cut(s) | 144, 271, 513 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 49, 187, 209, 254, 406, 502, 646, 776, 821 |
| BstNI | CCWGG | 2 cut(s) | 74, 947 |
| BstSCI | CCNGG | 4 cut(s) | 72, 212, 743, 945 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstUI | CGCG | 3 cut(s) | 257, 586, 934 |
| BstV1I | GCAGC | 7 cut(s) | 190, 193, 235, 431, 811, 1051, 1054 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuI | GTATCC | 1 cut(s) | 622 |
| BsuRI | GGCC | 7 cut(s) | 71, 223, 448, 659, 776, 953, 1028 |
| BtgI | CCRYGG | 2 cut(s) | 783, 975 |
| BtsCI | GGATG | 3 cut(s) | 334, 559, 753 |
| BtsIMutI | CAGTG | 3 cut(s) | 135, 201, 449 |
| BveI | ACCTGC | 1 cut(s) | 846 |
| Cac8I | GCNNGC | 5 cut(s) | 54, 158, 507, 801, 936 |
| CfoI | GCGC | 3 cut(s) | 525, 586, 857 |
| Cfr13I | GGNCC | 5 cut(s) | 70, 221, 589, 835, 952 |
| CseI | GACGC | 2 cut(s) | 86, 991 |
| Csp6I | GTAC | 1 cut(s) | 140 |
| CviAII | CATG | 4 cut(s) | 608, 976, 1001, 1024 |
| CviQI | GTAC | 1 cut(s) | 140 |
| DdeI | CTNAG | 8 cut(s) | 177, 276, 435, 452, 531, 756, 879, 897 |
| DinI | GGCGCC | 2 cut(s) | 524, 856 |
| DpnI | GATC | 3 cut(s) | 146, 273, 515 |
| DpnII | GATC | 3 cut(s) | 144, 271, 513 |
| EaeI | YGGCCR | 2 cut(s) | 446, 1026 |
| Eam1104I | CTCTTC | 3 cut(s) | 86, 117, 296 |
| EarI | CTCTTC | 3 cut(s) | 86, 117, 296 |
| Eco130I | CCWWGG | 2 cut(s) | 660, 975 |
| Eco24I | GRGCYC | 2 cut(s) | 21, 992 |
| Eco31I | GGTCTC | 2 cut(s) | 326, 476 |
| Eco32I | GATATC | 1 cut(s) | 679 |
| Eco47I | GGWCC | 2 cut(s) | 589, 835 |
| Eco57I | CTGAAG | 2 cut(s) | 668, 945 |
| Eco72I | CACGTG | 1 cut(s) | 962 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 530, 809 |
| EcoO109I | RGGNCCY | 1 cut(s) | 589 |
| EcoRII | CCWGG | 2 cut(s) | 72, 945 |
| EcoRV | GATATC | 1 cut(s) | 679 |
| EcoT14I | CCWWGG | 2 cut(s) | 660, 975 |
| EcoT38I | GRGCYC | 2 cut(s) | 21, 992 |
| EgeI | GGCGCC | 2 cut(s) | 524, 856 |
| EheI | GGCGCC | 2 cut(s) | 524, 856 |
| ErhI | CCWWGG | 2 cut(s) | 660, 975 |
| FaeI | CATG | 4 cut(s) | 611, 979, 1004, 1027 |
| FaiI | YATR | 8 cut(s) | 68, 303, 609, 632, 957, 977, 1002, 1025 |
| FaqI | GGGAC | 1 cut(s) | 602 |
| FatI | CATG | 4 cut(s) | 607, 975, 1000, 1023 |
| FauI | CCCGC | 2 cut(s) | 579, 681 |
| FokI | GGATG | 3 cut(s) | 341, 566, 760 |
| FriOI | GRGCYC | 2 cut(s) | 21, 992 |
| FspBI | CTAG | 5 cut(s) | 38, 311, 416, 506, 653 |
| GlaI | GCGC | 3 cut(s) | 524, 585, 856 |
| GsuI | CTGGAG | 1 cut(s) | 496 |
| HaeII | RGCGCY | 2 cut(s) | 526, 858 |
| HaeIII | GGCC | 7 cut(s) | 71, 223, 448, 659, 776, 953, 1028 |
| HapII | CCGG | 2 cut(s) | 213, 745 |
| HgaI | GACGC | 2 cut(s) | 86, 991 |
| HhaI | GCGC | 3 cut(s) | 525, 586, 857 |
| Hin1I | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| Hin1II | CATG | 4 cut(s) | 611, 979, 1004, 1027 |
| Hin6I | GCGC | 3 cut(s) | 523, 584, 855 |
| HinP1I | GCGC | 3 cut(s) | 523, 584, 855 |
| HinfI | GANTC | 7 cut(s) | 184, 239, 545, 763, 788, 893, 904 |
| HpaII | CCGG | 2 cut(s) | 213, 745 |
| HphI | GGTGA | 3 cut(s) | 131, 991, 1064 |
| Hpy166II | GTNNAC | 1 cut(s) | 1055 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 925, 1009 |
| Hpy188III | TCNNGA | 4 cut(s) | 265, 275, 475, 517 |
| Hpy8I | GTNNAC | 1 cut(s) | 1055 |
| Hpy99I | CGWCG | 1 cut(s) | 367 |
| HpyAV | CCTTC | 4 cut(s) | 110, 166, 461, 692 |
| HpyCH4III | ACNGT | 3 cut(s) | 139, 337, 1052 |
| HpyCH4IV | ACGT | 1 cut(s) | 961 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 49, 187, 209, 254, 406, 502, 646, 776, 821 |
| HpyF3I | CTNAG | 8 cut(s) | 177, 276, 435, 452, 531, 756, 879, 897 |
| HpySE526I | ACGT | 1 cut(s) | 961 |
| Hsp92I | GRCGYC | 4 cut(s) | 97, 523, 855, 983 |
| Hsp92II | CATG | 4 cut(s) | 611, 979, 1004, 1027 |
| HspAI | GCGC | 3 cut(s) | 523, 584, 855 |
| KasI | GGCGCC | 2 cut(s) | 522, 854 |
| Kzo9I | GATC | 3 cut(s) | 144, 271, 513 |
| LmnI | GCTCC | 4 cut(s) | 622, 646, 1010, 1075 |
| Lsp1109I | GCAGC | 7 cut(s) | 190, 193, 235, 431, 811, 1051, 1054 |
| LweI | GCATC | 2 cut(s) | 394, 544 |
| MaeI | CTAG | 5 cut(s) | 38, 311, 416, 506, 653 |
| MaeII | ACGT | 1 cut(s) | 961 |
| MaeIII | GTNAC | 3 cut(s) | 196, 560, 979 |
| MalI | GATC | 3 cut(s) | 146, 273, 515 |
| MbiI | CCGCTC | 3 cut(s) | 307, 445, 1031 |
| MboI | GATC | 3 cut(s) | 144, 271, 513 |
| MboII | GAAGA | 5 cut(s) | 103, 134, 181, 283, 523 |
| MhlI | GDGCHC | 2 cut(s) | 21, 992 |
| Mly113I | GGCGCC | 2 cut(s) | 523, 855 |
| MlyI | GAGTC | 5 cut(s) | 178, 233, 772, 797, 898 |
| MmeI | TCCRAC | 4 cut(s) | 531, 600, 708, 1032 |
| MseI | TTAA | 4 cut(s) | 344, 666, 719, 1047 |
| MslI | CAYNNNNRTG | 3 cut(s) | 300, 960, 977 |
| MspA1I | CMGCKG | 4 cut(s) | 203, 688, 824, 901 |
| MspI | CCGG | 2 cut(s) | 213, 745 |
| MspR9I | CCNGG | 4 cut(s) | 74, 214, 745, 947 |
| MvaI | CCWGG | 2 cut(s) | 74, 947 |
| MvnI | CGCG | 3 cut(s) | 257, 586, 934 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 49, 187, 209, 254, 406, 502, 646, 776, 821 |
| NarI | GGCGCC | 2 cut(s) | 523, 855 |
| NciI | CCSGG | 2 cut(s) | 214, 745 |
| NcoI | CCATGG | 1 cut(s) | 975 |
| NdeII | GATC | 3 cut(s) | 144, 271, 513 |
| NheI | GCTAGC | 1 cut(s) | 505 |
| NlaIII | CATG | 4 cut(s) | 611, 979, 1004, 1027 |
| NlaIV | GGNNCC | 9 cut(s) | 6, 222, 428, 524, 590, 820, 856, 973, 1006 |
| NmeAIII | GCCGAG | 2 cut(s) | 33, 1011 |
| NmuCI | GTSAC | 3 cut(s) | 196, 560, 979 |
| OliI | CACNNNNGTG | 1 cut(s) | 977 |
| PasI | CCCWGGG | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 545, 893 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 712, 864 |
| PleI | GAGTC | 5 cut(s) | 178, 233, 771, 796, 898 |
| PluTI | GGCGCC | 2 cut(s) | 526, 858 |
| PmaCI | CACGTG | 1 cut(s) | 962 |
| PmlI | CACGTG | 1 cut(s) | 962 |
| PpsI | GAGTC | 5 cut(s) | 178, 233, 771, 796, 898 |
| Ppu21I | YACGTR | 1 cut(s) | 962 |
| PpuMI | RGGWCCY | 1 cut(s) | 589 |
| Psp5II | RGGWCCY | 1 cut(s) | 589 |
| Psp6I | CCWGG | 2 cut(s) | 72, 945 |
| PspCI | CACGTG | 1 cut(s) | 962 |
| PspGI | CCWGG | 2 cut(s) | 72, 945 |
| PspN4I | GGNNCC | 9 cut(s) | 6, 222, 428, 524, 590, 820, 856, 973, 1006 |
| PspPI | GGNCC | 5 cut(s) | 70, 221, 589, 835, 952 |
| PspPPI | RGGWCCY | 1 cut(s) | 589 |
| PvuII | CAGCTG | 1 cut(s) | 901 |
| RsaI | GTAC | 1 cut(s) | 141 |
| RsaNI | GTAC | 1 cut(s) | 140 |
| RseI | CAYNNNNRTG | 3 cut(s) | 300, 960, 977 |
| SaqAI | TTAA | 4 cut(s) | 344, 666, 719, 1047 |
| Sau3AI | GATC | 3 cut(s) | 144, 271, 513 |
| Sau96I | GGNCC | 5 cut(s) | 70, 221, 589, 835, 952 |
| SchI | GAGTC | 5 cut(s) | 178, 233, 772, 797, 898 |
| ScrFI | CCNGG | 4 cut(s) | 74, 214, 745, 947 |
| SduI | GDGCHC | 2 cut(s) | 21, 992 |
| SfaNI | GCATC | 2 cut(s) | 394, 544 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| SfoI | GGCGCC | 2 cut(s) | 524, 856 |
| SinI | GGWCC | 2 cut(s) | 589, 835 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 300, 960, 977 |
| SmlI | CTYRAG | 1 cut(s) | 593 |
| SmoI | CTYRAG | 1 cut(s) | 593 |
| SspDI | GGCGCC | 2 cut(s) | 522, 854 |
| SspI | AATATT | 1 cut(s) | 574 |
| SspMI | CTAG | 5 cut(s) | 38, 311, 416, 506, 653 |
| StyD4I | CCNGG | 4 cut(s) | 72, 212, 743, 945 |
| StyI | CCWWGG | 2 cut(s) | 660, 975 |
| TaaI | ACNGT | 3 cut(s) | 139, 337, 1052 |
| TaiI | ACGT | 1 cut(s) | 964 |
| TaqI | TCGA | 4 cut(s) | 47, 60, 516, 766 |
| TatI | WGTACW | 1 cut(s) | 139 |
| TauI | GCSGC | 8 cut(s) | 212, 310, 448, 779, 782, 824, 953, 1031 |
| TfiI | GAWTC | 2 cut(s) | 545, 893 |
| Tru1I | TTAA | 4 cut(s) | 344, 666, 719, 1047 |
| Tru9I | TTAA | 4 cut(s) | 344, 666, 719, 1047 |
| TscAI | CASTG | 3 cut(s) | 142, 201, 456 |
| TseFI | GTSAC | 3 cut(s) | 196, 560, 979 |
| TseI | GCWGC | 7 cut(s) | 203, 206, 248, 419, 824, 1039, 1067 |
| Tsp45I | GTSAC | 3 cut(s) | 196, 560, 979 |
| TspDTI | ATGAA | 1 cut(s) | 120 |
| TspGWI | ACGGA | 2 cut(s) | 382, 824 |
| TspRI | CASTG | 3 cut(s) | 142, 201, 456 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 712, 864 |
| VpaK11BI | GGWCC | 2 cut(s) | 589, 835 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 530, 809 |
| XspI | CTAG | 5 cut(s) | 38, 311, 416, 506, 653 |