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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 155 |
| Acc16I | TGCGCA | 2 cut(s) | 1337, 1358 |
| Acc36I | ACCTGC | 1 cut(s) | 780 |
| AccB1I | GGYRCC | 1 cut(s) | 107 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1319 |
| AccBSI | CCGCTC | 1 cut(s) | 614 |
| AccI | GTMKAC | 1 cut(s) | 147 |
| AccII | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| AclWI | GGATC | 1 cut(s) | 950 |
| AcoI | YGGCCR | 4 cut(s) | 3, 96, 1264, 1371 |
| AcsI | RAATTY | 2 cut(s) | 404, 655 |
| AcuI | CTGAAG | 3 cut(s) | 1118, 1137, 1409 |
| AcyI | GRCGYC | 1 cut(s) | 803 |
| AfaI | GTAC | 2 cut(s) | 554, 916 |
| AfeI | AGCGCT | 1 cut(s) | 1076 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 53, 78, 343, 641, 670, 842, 1319 |
| AflIII | ACRYGT | 1 cut(s) | 1239 |
| AgsI | TTSAA | 3 cut(s) | 661, 811, 871 |
| AjnI | CCWGG | 5 cut(s) | 584, 826, 999, 1182, 1296 |
| AleI | CACNNNNGTG | 2 cut(s) | 21, 1154 |
| AluBI | AGCT | 7 cut(s) | 259, 448, 486, 789, 796, 858, 1254 |
| AluI | AGCT | 7 cut(s) | 259, 448, 486, 789, 796, 858, 1254 |
| Alw21I | GWGCWC | 1 cut(s) | 1072 |
| Alw26I | GTCTC | 2 cut(s) | 315, 1034 |
| AlwI | GGATC | 1 cut(s) | 950 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 41, 1169 |
| Ama87I | CYCGRG | 1 cut(s) | 263 |
| Aor51HI | AGCGCT | 1 cut(s) | 1076 |
| ApaI | GGGCCC | 1 cut(s) | 635 |
| ApeKI | GCWGC | 7 cut(s) | 373, 376, 592, 677, 744, 858, 1333 |
| ApoI | RAATTY | 2 cut(s) | 404, 655 |
| AspLEI | GCGC | 5 cut(s) | 592, 1077, 1338, 1359, 1441 |
| AspS9I | GGNCC | 5 cut(s) | 616, 631, 632, 928, 1160 |
| AsuC2I | CCSGG | 3 cut(s) | 264, 265, 843 |
| AsuHPI | GGTGA | 5 cut(s) | 149, 283, 577, 1004, 1236 |
| AvaI | CYCGRG | 1 cut(s) | 263 |
| AvaII | GGWCC | 1 cut(s) | 1160 |
| BaeGI | GKGCMC | 1 cut(s) | 635 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 544, 577 |
| BalI | TGGCCA | 2 cut(s) | 5, 98 |
| BanI | GGYRCC | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 635 |
| BbsI | GAAGAC | 1 cut(s) | 1242 |
| Bbv12I | GWGCWC | 1 cut(s) | 1072 |
| BbvCI | CCTCAGC | 1 cut(s) | 290 |
| BbvI | GCAGC | 7 cut(s) | 360, 363, 579, 664, 731, 845, 1320 |
| BccI | CCATC | 4 cut(s) | 179, 1029, 1275, 1321 |
| BceAI | ACGGC | 4 cut(s) | 95, 302, 1106, 1445 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 344, 378 |
| BciT130I | CCWGG | 5 cut(s) | 586, 828, 1001, 1184, 1298 |
| BcnI | CCSGG | 3 cut(s) | 264, 265, 843 |
| BcoDI | GTCTC | 2 cut(s) | 315, 1034 |
| BfaI | CTAG | 4 cut(s) | 786, 908, 1065, 1139 |
| BfmI | CTRYAG | 4 cut(s) | 314, 377, 1032, 1196 |
| BfoI | RGCGCY | 2 cut(s) | 593, 1078 |
| BfuAI | ACCTGC | 1 cut(s) | 780 |
| Bme1390I | CCNGG | 8 cut(s) | 264, 265, 586, 828, 843, 1001, 1184, 1298 |
| Bme18I | GGWCC | 1 cut(s) | 1160 |
| BmeT110I | CYCGRG | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 5 cut(s) | 616, 631, 632, 928, 1160 |
| BmiI | GGNNCC | 4 cut(s) | 109, 368, 633, 1161 |
| BmrFI | CCNGG | 8 cut(s) | 264, 265, 586, 828, 843, 1001, 1184, 1298 |
| BmrI | ACTGGG | 1 cut(s) | 1329 |
| BmsI | GCATC | 2 cut(s) | 996, 1426 |
| BmuI | ACTGGG | 1 cut(s) | 1329 |
| BpiI | GAAGAC | 1 cut(s) | 1242 |
| BpmI | CTGGAG | 2 cut(s) | 371, 1022 |
| Bpu10I | CCTNAGC | 1 cut(s) | 290 |
| BpuEI | CTTGAG | 1 cut(s) | 592 |
| BpuMI | CCSGG | 3 cut(s) | 264, 265, 843 |
| BsaHI | GRCGYC | 1 cut(s) | 803 |
| BsaJI | CCNNGG | 6 cut(s) | 263, 264, 585, 640, 669, 1413 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 704, 734 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 53, 78, 343, 641, 670, 842, 1319 |
| Bse1I | ACTGG | 3 cut(s) | 99, 1324, 1455 |
| Bse3DI | GCAATG | 1 cut(s) | 885 |
| BseBI | CCWGG | 5 cut(s) | 586, 828, 1001, 1184, 1298 |
| BseDI | CCNNGG | 6 cut(s) | 263, 264, 585, 640, 669, 1413 |
| BseGI | GGATG | 5 cut(s) | 205, 246, 483, 1108, 1306 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 53, 78, 343, 641, 670, 842, 1319 |
| BseMI | GCAATG | 1 cut(s) | 885 |
| BseMII | CTCAG | 2 cut(s) | 281, 833 |
| BseNI | ACTGG | 3 cut(s) | 99, 1324, 1455 |
| BseRI | GAGGAG | 1 cut(s) | 1238 |
| BseSI | GKGCMC | 1 cut(s) | 635 |
| BseXI | GCAGC | 7 cut(s) | 360, 363, 579, 664, 731, 845, 1320 |
| BseYI | CCCAGC | 3 cut(s) | 601, 747, 789 |
| BsgI | GTGCAG | 1 cut(s) | 844 |
| Bsh1236I | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| BshNI | GGYRCC | 1 cut(s) | 107 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1072 |
| BsiHKCI | CYCGRG | 1 cut(s) | 263 |
| BsiSI | CCGG | 3 cut(s) | 264, 710, 843 |
| BslFI | GGGAC | 2 cut(s) | 471, 1173 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 53, 78, 343, 641, 670, 842, 1319 |
| BsmAI | GTCTC | 2 cut(s) | 315, 1034 |
| BsmBI | CGTCTC | 1 cut(s) | 315 |
| BsmFI | GGGAC | 2 cut(s) | 471, 1173 |
| BsmI | GAATGC | 1 cut(s) | 469 |
| BsoBI | CYCGRG | 1 cut(s) | 263 |
| Bsp120I | GGGCCC | 1 cut(s) | 631 |
| Bsp1286I | GDGCHC | 2 cut(s) | 635, 1072 |
| Bsp143I | GATC | 3 cut(s) | 231, 409, 955 |
| BspCNI | CTCAG | 2 cut(s) | 282, 832 |
| BspFNI | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| BspLI | GGNNCC | 4 cut(s) | 109, 368, 633, 1161 |
| BspMAI | CTGCAG | 3 cut(s) | 318, 381, 1036 |
| BspMI | ACCTGC | 1 cut(s) | 780 |
| BspPI | GGATC | 1 cut(s) | 950 |
| BspT107I | GGYRCC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 1 cut(s) | 614 |
| BsrDI | GCAATG | 1 cut(s) | 885 |
| BsrI | ACTGG | 3 cut(s) | 99, 1324, 1455 |
| BssECI | CCNNGG | 6 cut(s) | 263, 264, 585, 640, 669, 1413 |
| BssMI | GATC | 3 cut(s) | 231, 409, 955 |
| BssNI | GRCGYC | 1 cut(s) | 803 |
| BssT1I | CCWWGG | 3 cut(s) | 640, 669, 1413 |
| Bst2UI | CCWGG | 5 cut(s) | 586, 828, 1001, 1184, 1298 |
| Bst4CI | ACNGT | 2 cut(s) | 952, 1248 |
| Bst6I | CTCTTC | 3 cut(s) | 536, 1199, 1376 |
| BstACI | GRCGYC | 1 cut(s) | 803 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 4 cut(s) | 73, 115, 318, 578 |
| BstDEI | CTNAG | 3 cut(s) | 290, 819, 854 |
| BstEII | GGTNACC | 1 cut(s) | 1186 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 639, 668 |
| BstF5I | GGATG | 5 cut(s) | 205, 246, 483, 1108, 1306 |
| BstFNI | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| BstH2I | RGCGCY | 2 cut(s) | 593, 1078 |
| BstHHI | GCGC | 5 cut(s) | 592, 1077, 1338, 1359, 1441 |
| BstKTI | GATC | 3 cut(s) | 234, 412, 958 |
| BstMAI | GTCTC | 2 cut(s) | 315, 1034 |
| BstMBI | GATC | 3 cut(s) | 231, 409, 955 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 41, 50, 114, 326, 598, 935, 1067 |
| BstNI | CCWGG | 5 cut(s) | 586, 828, 1001, 1184, 1298 |
| BstNSI | RCATGY | 1 cut(s) | 442 |
| BstPI | GGTNACC | 1 cut(s) | 1186 |
| BstSCI | CCNGG | 8 cut(s) | 262, 263, 584, 826, 841, 999, 1182, 1296 |
| BstSFI | CTRYAG | 4 cut(s) | 314, 377, 1032, 1196 |
| BstSLI | GKGCMC | 1 cut(s) | 635 |
| BstUI | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| BstV1I | GCAGC | 7 cut(s) | 360, 363, 579, 664, 731, 845, 1320 |
| BstV2I | GAAGAC | 1 cut(s) | 1242 |
| BtsCI | GGATG | 5 cut(s) | 205, 246, 483, 1108, 1306 |
| BtsI | GCAGTG | 2 cut(s) | 1167, 1345 |
| BtsIMutI | CAGTG | 3 cut(s) | 1161, 1167, 1345 |
| BveI | ACCTGC | 1 cut(s) | 780 |
| Cac8I | GCNNGC | 4 cut(s) | 73, 115, 318, 578 |
| CaiI | CAGNNNCTG | 2 cut(s) | 41, 1169 |
| CfoI | GCGC | 5 cut(s) | 592, 1077, 1338, 1359, 1441 |
| Cfr13I | GGNCC | 5 cut(s) | 616, 631, 632, 928, 1160 |
| Cfr9I | CCCGGG | 1 cut(s) | 263 |
| CseI | GACGC | 6 cut(s) | 145, 792, 1080, 1184, 1230, 1247 |
| Csp6I | GTAC | 2 cut(s) | 553, 915 |
| CviAII | CATG | 4 cut(s) | 104, 338, 439, 1329 |
| CviQI | GTAC | 2 cut(s) | 553, 915 |
| DdeI | CTNAG | 3 cut(s) | 290, 819, 854 |
| DpnI | GATC | 3 cut(s) | 233, 411, 957 |
| DpnII | GATC | 3 cut(s) | 231, 409, 955 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 155 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 155 |
| EaeI | YGGCCR | 4 cut(s) | 3, 96, 1264, 1371 |
| Eam1104I | CTCTTC | 3 cut(s) | 536, 1199, 1376 |
| EarI | CTCTTC | 3 cut(s) | 536, 1199, 1376 |
| EciI | GGCGGA | 2 cut(s) | 58, 1433 |
| Eco130I | CCWWGG | 3 cut(s) | 640, 669, 1413 |
| Eco147I | AGGCCT | 1 cut(s) | 1137 |
| Eco24I | GRGCYC | 1 cut(s) | 635 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 1 cut(s) | 1160 |
| Eco47III | AGCGCT | 1 cut(s) | 1076 |
| Eco57I | CTGAAG | 3 cut(s) | 1118, 1137, 1409 |
| Eco88I | CYCGRG | 1 cut(s) | 263 |
| Eco91I | GGTNACC | 1 cut(s) | 1186 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 639, 668 |
| EcoO109I | RGGNCCY | 2 cut(s) | 631, 632 |
| EcoO65I | GGTNACC | 1 cut(s) | 1186 |
| EcoRII | CCWGG | 5 cut(s) | 584, 826, 999, 1182, 1296 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 3 cut(s) | 640, 669, 1413 |
| EcoT22I | ATGCAT | 1 cut(s) | 469 |
| EcoT38I | GRGCYC | 1 cut(s) | 635 |
| ErhI | CCWWGG | 3 cut(s) | 640, 669, 1413 |
| Esp3I | CGTCTC | 1 cut(s) | 315 |
| FaeI | CATG | 4 cut(s) | 107, 341, 442, 1332 |
| FaqI | GGGAC | 2 cut(s) | 471, 1173 |
| FatI | CATG | 4 cut(s) | 103, 337, 438, 1328 |
| FauI | CCCGC | 3 cut(s) | 46, 240, 378 |
| FauNDI | CATATG | 1 cut(s) | 1045 |
| FblI | GTMKAC | 1 cut(s) | 147 |
| FokI | GGATG | 5 cut(s) | 212, 253, 490, 1115, 1313 |
| FriOI | GRGCYC | 1 cut(s) | 635 |
| FspBI | CTAG | 4 cut(s) | 786, 908, 1065, 1139 |
| FspI | TGCGCA | 2 cut(s) | 1337, 1358 |
| GlaI | GCGC | 5 cut(s) | 591, 1076, 1337, 1358, 1440 |
| GsaI | CCCAGC | 3 cut(s) | 605, 751, 793 |
| GsuI | CTGGAG | 2 cut(s) | 371, 1022 |
| HaeII | RGCGCY | 2 cut(s) | 593, 1078 |
| HapII | CCGG | 3 cut(s) | 264, 710, 843 |
| HgaI | GACGC | 6 cut(s) | 145, 792, 1080, 1184, 1230, 1247 |
| HhaI | GCGC | 5 cut(s) | 592, 1077, 1338, 1359, 1441 |
| Hin1I | GRCGYC | 1 cut(s) | 803 |
| Hin1II | CATG | 4 cut(s) | 107, 341, 442, 1332 |
| Hin6I | GCGC | 5 cut(s) | 590, 1075, 1336, 1357, 1439 |
| HinP1I | GCGC | 5 cut(s) | 590, 1075, 1336, 1357, 1439 |
| HincII | GTYRAC | 2 cut(s) | 148, 705 |
| HindII | GTYRAC | 2 cut(s) | 148, 705 |
| HindIII | AAGCTT | 1 cut(s) | 257 |
| HinfI | GANTC | 6 cut(s) | 683, 735, 754, 817, 823, 1351 |
| HpaI | GTTAAC | 1 cut(s) | 705 |
| HpaII | CCGG | 3 cut(s) | 264, 710, 843 |
| HphI | GGTGA | 5 cut(s) | 149, 283, 577, 1004, 1236 |
| Hpy166II | GTNNAC | 4 cut(s) | 122, 148, 568, 705 |
| Hpy188I | TCNGA | 6 cut(s) | 184, 498, 783, 822, 985, 1081 |
| Hpy188III | TCNNGA | 1 cut(s) | 388 |
| Hpy8I | GTNNAC | 4 cut(s) | 122, 148, 568, 705 |
| Hpy99I | CGWCG | 3 cut(s) | 152, 161, 1096 |
| HpyCH4III | ACNGT | 2 cut(s) | 952, 1248 |
| HpyCH4IV | ACGT | 1 cut(s) | 917 |
| HpyCH4V | TGCA | 6 cut(s) | 316, 379, 467, 694, 861, 1034 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 41, 50, 114, 326, 598, 935, 1067 |
| HpyF3I | CTNAG | 3 cut(s) | 290, 819, 854 |
| HpySE526I | ACGT | 1 cut(s) | 917 |
| Hsp92I | GRCGYC | 1 cut(s) | 803 |
| Hsp92II | CATG | 4 cut(s) | 107, 341, 442, 1332 |
| HspAI | GCGC | 5 cut(s) | 590, 1075, 1336, 1357, 1439 |
| KspAI | GTTAAC | 1 cut(s) | 705 |
| Kzo9I | GATC | 3 cut(s) | 231, 409, 955 |
| LmnI | GCTCC | 4 cut(s) | 49, 453, 793, 1082 |
| Lsp1109I | GCAGC | 7 cut(s) | 360, 363, 579, 664, 731, 845, 1320 |
| LweI | GCATC | 2 cut(s) | 996, 1426 |
| MaeI | CTAG | 4 cut(s) | 786, 908, 1065, 1139 |
| MaeII | ACGT | 1 cut(s) | 917 |
| MaeIII | GTNAC | 6 cut(s) | 137, 219, 282, 1123, 1186, 1242 |
| MalI | GATC | 3 cut(s) | 233, 411, 957 |
| MbiI | CCGCTC | 1 cut(s) | 614 |
| MboI | GATC | 3 cut(s) | 231, 409, 955 |
| MboII | GAAGA | 9 cut(s) | 71, 553, 1016, 1019, 1216, 1241, 1244, 1247, 1393 |
| MhlI | GDGCHC | 2 cut(s) | 635, 1072 |
| MlsI | TGGCCA | 2 cut(s) | 5, 98 |
| MluCI | AATT | 2 cut(s) | 404, 655 |
| MluI | ACGCGT | 1 cut(s) | 1239 |
| MluNI | TGGCCA | 2 cut(s) | 5, 98 |
| MlyI | GAGTC | 2 cut(s) | 811, 1360 |
| MmeI | TCCRAC | 2 cut(s) | 1008, 1258 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 98 |
| Mph1103I | ATGCAT | 1 cut(s) | 469 |
| MscI | TGGCCA | 2 cut(s) | 5, 98 |
| MseI | TTAA | 5 cut(s) | 255, 278, 647, 704, 897 |
| MslI | CAYNNNNRTG | 2 cut(s) | 21, 1154 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 98 |
| MspA1I | CMGCKG | 5 cut(s) | 21, 117, 373, 486, 558 |
| MspI | CCGG | 3 cut(s) | 264, 710, 843 |
| MspR9I | CCNGG | 8 cut(s) | 264, 265, 586, 828, 843, 1001, 1184, 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 469 |
| MvaI | CCWGG | 5 cut(s) | 586, 828, 1001, 1184, 1298 |
| MvnI | CGCG | 4 cut(s) | 923, 1091, 1241, 1441 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 41, 50, 114, 326, 598, 935, 1067 |
| NciI | CCSGG | 3 cut(s) | 264, 265, 843 |
| NdeI | CATATG | 1 cut(s) | 1045 |
| NdeII | GATC | 3 cut(s) | 231, 409, 955 |
| NlaIII | CATG | 4 cut(s) | 107, 341, 442, 1332 |
| NlaIV | GGNNCC | 4 cut(s) | 109, 368, 633, 1161 |
| NmeAIII | GCCGAG | 1 cut(s) | 1235 |
| NmuCI | GTSAC | 4 cut(s) | 137, 219, 282, 1242 |
| NsbI | TGCGCA | 2 cut(s) | 1337, 1358 |
| NsiI | ATGCAT | 1 cut(s) | 469 |
| NspI | RCATGY | 1 cut(s) | 442 |
| OliI | CACNNNNGTG | 2 cut(s) | 21, 1154 |
| PceI | AGGCCT | 1 cut(s) | 1137 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 153, 156 |
| PctI | GAATGC | 1 cut(s) | 469 |
| PfeI | GAWTC | 4 cut(s) | 683, 735, 754, 823 |
| PflFI | GACNNNGTC | 1 cut(s) | 143 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1319 |
| PfoI | TCCNGGA | 2 cut(s) | 999, 1296 |
| PleI | GAGTC | 2 cut(s) | 811, 1359 |
| PpsI | GAGTC | 2 cut(s) | 811, 1359 |
| Psp6I | CCWGG | 5 cut(s) | 584, 826, 999, 1182, 1296 |
| PspEI | GGTNACC | 1 cut(s) | 1186 |
| PspFI | CCCAGC | 3 cut(s) | 601, 747, 789 |
| PspGI | CCWGG | 5 cut(s) | 584, 826, 999, 1182, 1296 |
| PspN4I | GGNNCC | 4 cut(s) | 109, 368, 633, 1161 |
| PspOMI | GGGCCC | 1 cut(s) | 631 |
| PspPI | GGNCC | 5 cut(s) | 616, 631, 632, 928, 1160 |
| PstI | CTGCAG | 3 cut(s) | 318, 381, 1036 |
| PstNI | CAGNNNCTG | 2 cut(s) | 41, 1169 |
| PsyI | GACNNNGTC | 1 cut(s) | 143 |
| PvuII | CAGCTG | 1 cut(s) | 486 |
| RsaI | GTAC | 2 cut(s) | 554, 916 |
| RsaNI | GTAC | 2 cut(s) | 553, 915 |
| RseI | CAYNNNNRTG | 2 cut(s) | 21, 1154 |
| SalI | GTCGAC | 1 cut(s) | 146 |
| SaqAI | TTAA | 5 cut(s) | 255, 278, 647, 704, 897 |
| Sau3AI | GATC | 3 cut(s) | 231, 409, 955 |
| Sau96I | GGNCC | 5 cut(s) | 616, 631, 632, 928, 1160 |
| SbfI | CCTGCAGG | 1 cut(s) | 1036 |
| SchI | GAGTC | 2 cut(s) | 811, 1360 |
| ScrFI | CCNGG | 8 cut(s) | 264, 265, 586, 828, 843, 1001, 1184, 1298 |
| SdaI | CCTGCAGG | 1 cut(s) | 1036 |
| SduI | GDGCHC | 2 cut(s) | 635, 1072 |
| SfaNI | GCATC | 2 cut(s) | 996, 1426 |
| SfcI | CTRYAG | 4 cut(s) | 314, 377, 1032, 1196 |
| SinI | GGWCC | 1 cut(s) | 1160 |
| SmaI | CCCGGG | 1 cut(s) | 265 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 21, 1154 |
| SmlI | CTYRAG | 1 cut(s) | 571 |
| SmoI | CTYRAG | 1 cut(s) | 571 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1036 |
| Sse9I | AATT | 2 cut(s) | 404, 655 |
| SseBI | AGGCCT | 1 cut(s) | 1137 |
| SspMI | CTAG | 4 cut(s) | 786, 908, 1065, 1139 |
| StuI | AGGCCT | 1 cut(s) | 1137 |
| StyD4I | CCNGG | 8 cut(s) | 262, 263, 584, 826, 841, 999, 1182, 1296 |
| StyI | CCWWGG | 3 cut(s) | 640, 669, 1413 |
| TaaI | ACNGT | 2 cut(s) | 952, 1248 |
| TaiI | ACGT | 1 cut(s) | 920 |
| TaqI | TCGA | 3 cut(s) | 147, 167, 215 |
| TasI | AATT | 2 cut(s) | 404, 655 |
| TauI | GCSGC | 7 cut(s) | 332, 617, 778, 1064, 1147, 1213, 1373 |
| TfiI | GAWTC | 4 cut(s) | 683, 735, 754, 823 |
| Tru1I | TTAA | 5 cut(s) | 255, 278, 647, 704, 897 |
| Tru9I | TTAA | 5 cut(s) | 255, 278, 647, 704, 897 |
| TscAI | CASTG | 3 cut(s) | 1161, 1174, 1345 |
| TseFI | GTSAC | 4 cut(s) | 137, 219, 282, 1242 |
| TseI | GCWGC | 7 cut(s) | 373, 376, 592, 677, 744, 858, 1333 |
| Tsp45I | GTSAC | 4 cut(s) | 137, 219, 282, 1242 |
| TspDTI | ATGAA | 4 cut(s) | 27, 216, 257, 554 |
| TspGWI | ACGGA | 1 cut(s) | 1376 |
| TspMI | CCCGGG | 1 cut(s) | 263 |
| TspRI | CASTG | 3 cut(s) | 1161, 1174, 1345 |
| Tth111I | GACNNNGTC | 1 cut(s) | 143 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1319 |
| VpaK11BI | GGWCC | 1 cut(s) | 1160 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 639, 668 |
| XapI | RAATTY | 2 cut(s) | 404, 655 |
| XceI | RCATGY | 1 cut(s) | 442 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1274 |
| XmaI | CCCGGG | 1 cut(s) | 263 |
| XmiI | GTMKAC | 1 cut(s) | 147 |
| XspI | CTAG | 4 cut(s) | 786, 908, 1065, 1139 |
| Zsp2I | ATGCAT | 1 cut(s) | 469 |