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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 85 |
| AccB1I | GGYRCC | 2 cut(s) | 551, 587 |
| AccBSI | CCGCTC | 1 cut(s) | 46 |
| AccI | GTMKAC | 1 cut(s) | 384 |
| AccII | CGCG | 2 cut(s) | 282, 512 |
| AcuI | CTGAAG | 2 cut(s) | 446, 596 |
| AcvI | CACGTG | 1 cut(s) | 319 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 81, 251, 397, 456, 478, 535 |
| AflIII | ACRYGT | 1 cut(s) | 318 |
| AgsI | TTSAA | 1 cut(s) | 502 |
| AjiI | CACGTC | 1 cut(s) | 29 |
| AjnI | CCWGG | 1 cut(s) | 564 |
| AluBI | AGCT | 4 cut(s) | 250, 289, 344, 424 |
| AluI | AGCT | 4 cut(s) | 250, 289, 344, 424 |
| Alw26I | GTCTC | 2 cut(s) | 191, 327 |
| AoxI | GGCC | 6 cut(s) | 107, 207, 234, 366, 469, 480 |
| ApaI | GGGCCC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 3 cut(s) | 247, 394, 539 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 497 |
| AspLEI | GCGC | 1 cut(s) | 590 |
| AspS9I | GGNCC | 5 cut(s) | 33, 207, 208, 273, 469 |
| AvaII | GGWCC | 2 cut(s) | 33, 273 |
| BaeGI | GKGCMC | 1 cut(s) | 211 |
| BanI | GGYRCC | 2 cut(s) | 551, 587 |
| BanII | GRGCYC | 1 cut(s) | 211 |
| BbrPI | CACGTG | 1 cut(s) | 319 |
| BbvI | GCAGC | 3 cut(s) | 259, 406, 551 |
| BccI | CCATC | 4 cut(s) | 209, 263, 413, 494 |
| BceAI | ACGGC | 1 cut(s) | 167 |
| BciT130I | CCWGG | 1 cut(s) | 566 |
| BcoDI | GTCTC | 2 cut(s) | 191, 327 |
| BfaI | CTAG | 2 cut(s) | 251, 598 |
| BfmI | CTRYAG | 2 cut(s) | 111, 392 |
| BfoI | RGCGCY | 1 cut(s) | 591 |
| BfuAI | ACCTGC | 1 cut(s) | 85 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 131, 233 |
| Bme1390I | CCNGG | 1 cut(s) | 566 |
| Bme18I | GGWCC | 2 cut(s) | 33, 273 |
| BmgBI | CACGTC | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 5 cut(s) | 33, 207, 208, 273, 469 |
| BmiI | GGNNCC | 9 cut(s) | 34, 35, 90, 124, 208, 209, 274, 553, 589 |
| BmrFI | CCNGG | 1 cut(s) | 566 |
| BmrI | ACTGGG | 1 cut(s) | 445 |
| BmuI | ACTGGG | 1 cut(s) | 445 |
| BoxI | GACNNNNGTC | 1 cut(s) | 31 |
| BpmI | CTGGAG | 2 cut(s) | 141, 350 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 3 cut(s) | 280, 369, 510 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 81, 251, 397, 456, 478, 535 |
| Bse118I | RCCGGY | 1 cut(s) | 548 |
| Bse1I | ACTGG | 2 cut(s) | 135, 451 |
| Bse3DI | GCAATG | 1 cut(s) | 75 |
| BseBI | CCWGG | 1 cut(s) | 566 |
| BseDI | CCNNGG | 3 cut(s) | 280, 369, 510 |
| BseGI | GGATG | 4 cut(s) | 184, 193, 274, 387 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 81, 251, 397, 456, 478, 535 |
| BseMI | GCAATG | 1 cut(s) | 75 |
| BseNI | ACTGG | 2 cut(s) | 135, 451 |
| BseRI | GAGGAG | 1 cut(s) | 73 |
| BseSI | GKGCMC | 1 cut(s) | 211 |
| BseXI | GCAGC | 3 cut(s) | 259, 406, 551 |
| BseYI | CCCAGC | 1 cut(s) | 80 |
| Bsh1236I | CGCG | 2 cut(s) | 282, 512 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BshFI | GGCC | 6 cut(s) | 109, 209, 236, 368, 471, 482 |
| BshNI | GGYRCC | 2 cut(s) | 551, 587 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 549 |
| BslFI | GGGAC | 2 cut(s) | 19, 286 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 81, 251, 397, 456, 478, 535 |
| BsmAI | GTCTC | 2 cut(s) | 191, 327 |
| BsmFI | GGGAC | 2 cut(s) | 19, 286 |
| BsmI | GAATGC | 1 cut(s) | 505 |
| BsnI | GGCC | 6 cut(s) | 109, 209, 236, 368, 471, 482 |
| Bso31I | GGTCTC | 1 cut(s) | 191 |
| Bsp120I | GGGCCC | 1 cut(s) | 207 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspANI | GGCC | 6 cut(s) | 109, 209, 236, 368, 471, 482 |
| BspFNI | CGCG | 2 cut(s) | 282, 512 |
| BspLI | GGNNCC | 9 cut(s) | 34, 35, 90, 124, 208, 209, 274, 553, 589 |
| BspMAI | CTGCAG | 1 cut(s) | 396 |
| BspMI | ACCTGC | 1 cut(s) | 85 |
| BspT107I | GGYRCC | 2 cut(s) | 551, 587 |
| BspTNI | GGTCTC | 1 cut(s) | 191 |
| BsrBI | CCGCTC | 1 cut(s) | 46 |
| BsrDI | GCAATG | 1 cut(s) | 75 |
| BsrFI | RCCGGY | 1 cut(s) | 548 |
| BsrI | ACTGG | 2 cut(s) | 135, 451 |
| BssAI | RCCGGY | 1 cut(s) | 548 |
| BssECI | CCNNGG | 3 cut(s) | 280, 369, 510 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst2UI | CCWGG | 1 cut(s) | 566 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 3 cut(s) | 234, 287, 525 |
| BstDSI | CCRYGG | 2 cut(s) | 280, 510 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 533 |
| BstF5I | GGATG | 4 cut(s) | 184, 193, 274, 387 |
| BstFNI | CGCG | 2 cut(s) | 282, 512 |
| BstH2I | RGCGCY | 1 cut(s) | 591 |
| BstHHI | GCGC | 1 cut(s) | 590 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMAI | GTCTC | 2 cut(s) | 191, 327 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 233, 416, 482, 545, 554 |
| BstNI | CCWGG | 1 cut(s) | 566 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 31 |
| BstSCI | CCNGG | 1 cut(s) | 564 |
| BstSFI | CTRYAG | 2 cut(s) | 111, 392 |
| BstSLI | GKGCMC | 1 cut(s) | 211 |
| BstUI | CGCG | 2 cut(s) | 282, 512 |
| BstV1I | GCAGC | 3 cut(s) | 259, 406, 551 |
| BsuRI | GGCC | 6 cut(s) | 109, 209, 236, 368, 471, 482 |
| BtgI | CCRYGG | 2 cut(s) | 280, 510 |
| BtgZI | GCGATG | 1 cut(s) | 391 |
| BtrI | CACGTC | 1 cut(s) | 29 |
| BtsCI | GGATG | 4 cut(s) | 184, 193, 274, 387 |
| BtsIMutI | CAGTG | 1 cut(s) | 128 |
| BveI | ACCTGC | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 3 cut(s) | 234, 287, 525 |
| CfoI | GCGC | 1 cut(s) | 590 |
| Cfr10I | RCCGGY | 1 cut(s) | 548 |
| Cfr13I | GGNCC | 5 cut(s) | 33, 207, 208, 273, 469 |
| Cfr42I | CCGCGG | 2 cut(s) | 283, 513 |
| CviAII | CATG | 1 cut(s) | 473 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| EciI | GGCGGA | 2 cut(s) | 7, 276 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco147I | AGGCCT | 2 cut(s) | 109, 236 |
| Eco24I | GRGCYC | 1 cut(s) | 211 |
| Eco31I | GGTCTC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 2 cut(s) | 33, 273 |
| Eco57I | CTGAAG | 2 cut(s) | 446, 596 |
| Eco72I | CACGTG | 1 cut(s) | 319 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 533 |
| EcoO109I | RGGNCCY | 3 cut(s) | 33, 207, 273 |
| EcoRII | CCWGG | 1 cut(s) | 564 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 211 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| FaeI | CATG | 1 cut(s) | 476 |
| FaiI | YATR | 3 cut(s) | 341, 474, 517 |
| FaqI | GGGAC | 2 cut(s) | 19, 286 |
| FatI | CATG | 1 cut(s) | 472 |
| FauI | CCCGC | 2 cut(s) | 39, 390 |
| FblI | GTMKAC | 1 cut(s) | 384 |
| FokI | GGATG | 4 cut(s) | 191, 200, 281, 374 |
| FriOI | GRGCYC | 1 cut(s) | 211 |
| FspBI | CTAG | 2 cut(s) | 251, 598 |
| GlaI | GCGC | 1 cut(s) | 589 |
| GsaI | CCCAGC | 1 cut(s) | 84 |
| GsuI | CTGGAG | 2 cut(s) | 141, 350 |
| HaeII | RGCGCY | 1 cut(s) | 591 |
| HaeIII | GGCC | 6 cut(s) | 109, 209, 236, 368, 471, 482 |
| HapII | CCGG | 1 cut(s) | 549 |
| HhaI | GCGC | 1 cut(s) | 590 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 1 cut(s) | 476 |
| Hin6I | GCGC | 1 cut(s) | 588 |
| HinP1I | GCGC | 1 cut(s) | 588 |
| HincII | GTYRAC | 1 cut(s) | 385 |
| HindII | GTYRAC | 1 cut(s) | 385 |
| HinfI | GANTC | 1 cut(s) | 401 |
| HpaII | CCGG | 1 cut(s) | 549 |
| Hpy166II | GTNNAC | 1 cut(s) | 385 |
| Hpy188III | TCNNGA | 1 cut(s) | 490 |
| Hpy8I | GTNNAC | 1 cut(s) | 385 |
| Hpy99I | CGWCG | 2 cut(s) | 30, 302 |
| HpyAV | CCTTC | 3 cut(s) | 286, 373, 460 |
| HpyCH4IV | ACGT | 2 cut(s) | 28, 318 |
| HpyCH4V | TGCA | 2 cut(s) | 394, 476 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 233, 416, 482, 545, 554 |
| HpySE526I | ACGT | 2 cut(s) | 28, 318 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 1 cut(s) | 476 |
| HspAI | GCGC | 1 cut(s) | 588 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| KflI | GGGWCCC | 1 cut(s) | 33 |
| KspI | CCGCGG | 2 cut(s) | 283, 513 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LmnI | GCTCC | 5 cut(s) | 43, 88, 122, 331, 421 |
| Lsp1109I | GCAGC | 3 cut(s) | 259, 406, 551 |
| MaeI | CTAG | 2 cut(s) | 251, 598 |
| MaeII | ACGT | 2 cut(s) | 28, 318 |
| MaeIII | GTNAC | 1 cut(s) | 97 |
| MalI | GATC | 1 cut(s) | 24 |
| MbiI | CCGCTC | 1 cut(s) | 46 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 3 cut(s) | 185, 232, 439 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MluCI | AATT | 1 cut(s) | 569 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 1 cut(s) | 410 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MroXI | GAANNNNTTC | 1 cut(s) | 497 |
| MspA1I | CMGCKG | 4 cut(s) | 119, 282, 397, 512 |
| MspI | CCGG | 1 cut(s) | 549 |
| MspR9I | CCNGG | 1 cut(s) | 566 |
| Mva1269I | GAATGC | 1 cut(s) | 505 |
| MvaI | CCWGG | 1 cut(s) | 566 |
| MvnI | CGCG | 2 cut(s) | 282, 512 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 233, 416, 482, 545, 554 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 1 cut(s) | 476 |
| NlaIV | GGNNCC | 9 cut(s) | 34, 35, 90, 124, 208, 209, 274, 553, 589 |
| NmeAIII | GCCGAG | 1 cut(s) | 304 |
| PceI | AGGCCT | 2 cut(s) | 109, 236 |
| PctI | GAATGC | 1 cut(s) | 505 |
| PdmI | GAANNNNTTC | 1 cut(s) | 497 |
| Ple19I | CGATCG | 1 cut(s) | 25 |
| PleI | GAGTC | 1 cut(s) | 409 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PmaCI | CACGTG | 1 cut(s) | 319 |
| PmlI | CACGTG | 1 cut(s) | 319 |
| PpsI | GAGTC | 1 cut(s) | 409 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| PpuMI | RGGWCCY | 2 cut(s) | 33, 273 |
| PshAI | GACNNNNGTC | 1 cut(s) | 31 |
| Psp5II | RGGWCCY | 2 cut(s) | 33, 273 |
| Psp6I | CCWGG | 1 cut(s) | 564 |
| PspCI | CACGTG | 1 cut(s) | 319 |
| PspFI | CCCAGC | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 564 |
| PspN4I | GGNNCC | 9 cut(s) | 34, 35, 90, 124, 208, 209, 274, 553, 589 |
| PspOMI | GGGCCC | 1 cut(s) | 207 |
| PspPI | GGNCC | 5 cut(s) | 33, 207, 208, 273, 469 |
| PspPPI | RGGWCCY | 2 cut(s) | 33, 273 |
| PstI | CTGCAG | 1 cut(s) | 396 |
| PvuI | CGATCG | 1 cut(s) | 25 |
| SacII | CCGCGG | 2 cut(s) | 283, 513 |
| SalI | GTCGAC | 1 cut(s) | 383 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 5 cut(s) | 33, 207, 208, 273, 469 |
| SchI | GAGTC | 1 cut(s) | 410 |
| ScrFI | CCNGG | 1 cut(s) | 566 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SfcI | CTRYAG | 2 cut(s) | 111, 392 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| Sfr303I | CCGCGG | 2 cut(s) | 283, 513 |
| SgrBI | CCGCGG | 2 cut(s) | 283, 513 |
| SinI | GGWCC | 2 cut(s) | 33, 273 |
| Sse9I | AATT | 1 cut(s) | 569 |
| SseBI | AGGCCT | 2 cut(s) | 109, 236 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 2 cut(s) | 251, 598 |
| StuI | AGGCCT | 2 cut(s) | 109, 236 |
| StyD4I | CCNGG | 1 cut(s) | 564 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaiI | ACGT | 2 cut(s) | 31, 321 |
| TaqI | TCGA | 4 cut(s) | 25, 56, 104, 384 |
| TasI | AATT | 1 cut(s) | 569 |
| TauI | GCSGC | 8 cut(s) | 94, 119, 247, 285, 485, 515, 557, 560 |
| TscAI | CASTG | 1 cut(s) | 135 |
| TseI | GCWGC | 3 cut(s) | 247, 394, 539 |
| TspDTI | ATGAA | 2 cut(s) | 17, 186 |
| TspGWI | ACGGA | 1 cut(s) | 209 |
| TspRI | CASTG | 1 cut(s) | 135 |
| VpaK11BI | GGWCC | 2 cut(s) | 33, 273 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 533 |
| XmiI | GTMKAC | 1 cut(s) | 384 |
| XmnI | GAANNNNTTC | 1 cut(s) | 497 |
| XspI | CTAG | 2 cut(s) | 251, 598 |