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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1545, 1656 |
| AccB1I | GGYRCC | 3 cut(s) | 173, 1398, 1660 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1041, 1365 |
| AccBSI | CCGCTC | 1 cut(s) | 1870 |
| AccI | GTMKAC | 2 cut(s) | 343, 836 |
| AccII | CGCG | 3 cut(s) | 394, 1596, 1733 |
| AclWI | GGATC | 2 cut(s) | 366, 1926 |
| AcoI | YGGCCR | 2 cut(s) | 1212, 1797 |
| AcuI | CTGAAG | 2 cut(s) | 308, 2087 |
| AdeI | CACNNNGTG | 2 cut(s) | 59, 1563 |
| AfaI | GTAC | 5 cut(s) | 105, 263, 575, 730, 1437 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 90, 205, 314, 383, 1041, 1365, 1464, 1870 |
| AgsI | TTSAA | 5 cut(s) | 601, 659, 1196, 1313, 1387 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1021, 1929 |
| AjiI | CACGTC | 1 cut(s) | 943 |
| AjnI | CCWGG | 4 cut(s) | 83, 364, 554, 1500 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1865, 1897 |
| AluBI | AGCT | 9 cut(s) | 258, 328, 404, 690, 710, 1453, 1945, 2008, 2050 |
| AluI | AGCT | 9 cut(s) | 258, 328, 404, 690, 710, 1453, 1945, 2008, 2050 |
| Alw21I | GWGCWC | 2 cut(s) | 23, 1947 |
| Alw26I | GTCTC | 6 cut(s) | 45, 391, 452, 512, 1340, 1730 |
| AlwI | GGATC | 2 cut(s) | 366, 1926 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2008 |
| Ama87I | CYCGRG | 2 cut(s) | 205, 1667 |
| AoxI | GGCC | 4 cut(s) | 92, 136, 1212, 1797 |
| ApeKI | GCWGC | 6 cut(s) | 4, 167, 372, 1651, 2002, 2005 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 23, 55, 920, 952 |
| AspA2I | CCTAGG | 1 cut(s) | 1073 |
| AspLEI | GCGC | 4 cut(s) | 450, 510, 1145, 1598 |
| AspS9I | GGNCC | 2 cut(s) | 1627, 1923 |
| AsuC2I | CCSGG | 7 cut(s) | 200, 377, 922, 1561, 1668, 1669, 1784 |
| AsuHPI | GGTGA | 6 cut(s) | 706, 923, 990, 1180, 1549, 1798 |
| AsuNHI | GCTAGC | 3 cut(s) | 497, 1106, 1148 |
| AvaI | CYCGRG | 2 cut(s) | 205, 1667 |
| AvaII | GGWCC | 2 cut(s) | 1627, 1923 |
| AvrII | CCTAGG | 1 cut(s) | 1073 |
| BaeGI | GKGCMC | 2 cut(s) | 178, 611 |
| BalI | TGGCCA | 1 cut(s) | 1214 |
| BanI | GGYRCC | 3 cut(s) | 173, 1398, 1660 |
| BanII | GRGCYC | 3 cut(s) | 206, 1750, 1947 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 96, 128 |
| BbsI | GAAGAC | 2 cut(s) | 530, 589 |
| Bbv12I | GWGCWC | 2 cut(s) | 23, 1947 |
| BbvI | GCAGC | 6 cut(s) | 16, 154, 384, 1638, 2014, 2017 |
| BccI | CCATC | 7 cut(s) | 377, 410, 471, 809, 877, 1009, 1748 |
| BceAI | ACGGC | 3 cut(s) | 292, 1583, 1706 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 333, 367, 609, 643 |
| BciT130I | CCWGG | 4 cut(s) | 85, 366, 556, 1502 |
| BclI | TGATCA | 1 cut(s) | 2086 |
| BcnI | CCSGG | 7 cut(s) | 200, 377, 922, 1561, 1668, 1669, 1784 |
| BcoDI | GTCTC | 6 cut(s) | 45, 391, 452, 512, 1340, 1730 |
| BfmI | CTRYAG | 2 cut(s) | 1028, 1260 |
| BfoI | RGCGCY | 1 cut(s) | 1146 |
| BfuAI | ACCTGC | 2 cut(s) | 1545, 1656 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1604, 1988 |
| BglII | AGATCT | 2 cut(s) | 668, 1350 |
| BlnI | CCTAGG | 1 cut(s) | 1073 |
| BlpI | GCTNAGC | 1 cut(s) | 511 |
| Bme18I | GGWCC | 2 cut(s) | 1627, 1923 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1021, 1929 |
| BmeT110I | CYCGRG | 2 cut(s) | 205, 1667 |
| BmgBI | CACGTC | 1 cut(s) | 943 |
| BmgT120I | GGNCC | 2 cut(s) | 1627, 1923 |
| BmiI | GGNNCC | 4 cut(s) | 175, 994, 1400, 1662 |
| BmsI | GCATC | 4 cut(s) | 982, 1711, 2017, 2026 |
| BmtI | GCTAGC | 3 cut(s) | 501, 1110, 1152 |
| BpiI | GAAGAC | 2 cut(s) | 530, 589 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 388, 420, 449, 481 |
| BpmI | CTGGAG | 1 cut(s) | 577 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1866 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 511 |
| BpuEI | CTTGAG | 4 cut(s) | 925, 1962, 1988, 2096 |
| BpuMI | CCSGG | 7 cut(s) | 200, 377, 922, 1561, 1668, 1669, 1784 |
| Bsa29I | ATCGAT | 1 cut(s) | 650 |
| BsaI | GGTCTC | 2 cut(s) | 1340, 1730 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 509, 539, 1865, 1895 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 90, 205, 314, 383, 1041, 1365, 1464, 1870 |
| Bse118I | RCCGGY | 1 cut(s) | 170 |
| Bse1I | ACTGG | 3 cut(s) | 272, 1920, 1992 |
| BseBI | CCWGG | 4 cut(s) | 85, 366, 556, 1502 |
| BseCI | ATCGAT | 1 cut(s) | 650 |
| BseGI | GGATG | 5 cut(s) | 388, 741, 888, 1001, 2041 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 90, 205, 314, 383, 1041, 1365, 1464, 1870 |
| BseMII | CTCAG | 5 cut(s) | 179, 557, 1839, 1857, 1929 |
| BseNI | ACTGG | 3 cut(s) | 272, 1920, 1992 |
| BseRI | GAGGAG | 5 cut(s) | 697, 1136, 1202, 1727, 1955 |
| BseSI | GKGCMC | 2 cut(s) | 178, 611 |
| BseXI | GCAGC | 6 cut(s) | 16, 154, 384, 1638, 2014, 2017 |
| BseYI | CCCAGC | 1 cut(s) | 1900 |
| BsgI | GTGCAG | 2 cut(s) | 109, 1832 |
| Bsh1236I | CGCG | 3 cut(s) | 394, 1596, 1733 |
| Bsh1285I | CGRYCG | 1 cut(s) | 700 |
| BshFI | GGCC | 4 cut(s) | 94, 138, 1214, 1799 |
| BshNI | GGYRCC | 3 cut(s) | 173, 1398, 1660 |
| BshVI | ATCGAT | 1 cut(s) | 650 |
| BsiEI | CGRYCG | 1 cut(s) | 700 |
| BsiHKAI | GWGCWC | 2 cut(s) | 23, 1947 |
| BsiHKCI | CYCGRG | 2 cut(s) | 205, 1667 |
| BsiSI | CCGG | 7 cut(s) | 171, 199, 377, 921, 1560, 1668, 1784 |
| BslFI | GGGAC | 2 cut(s) | 123, 818 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 90, 205, 314, 383, 1041, 1365, 1464, 1870 |
| BsmAI | GTCTC | 6 cut(s) | 45, 391, 452, 512, 1340, 1730 |
| BsmFI | GGGAC | 2 cut(s) | 123, 818 |
| BsmI | GAATGC | 2 cut(s) | 169, 2027 |
| BsnI | GGCC | 4 cut(s) | 94, 138, 1214, 1799 |
| Bso31I | GGTCTC | 2 cut(s) | 1340, 1730 |
| BsoBI | CYCGRG | 2 cut(s) | 205, 1667 |
| Bsp1286I | GDGCHC | 6 cut(s) | 23, 178, 206, 611, 1750, 1947 |
| Bsp143I | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 511 |
| Bsp19I | CCATGG | 3 cut(s) | 1040, 1053, 1791 |
| BspANI | GGCC | 4 cut(s) | 94, 138, 1214, 1799 |
| BspCNI | CTCAG | 5 cut(s) | 180, 556, 1840, 1858, 1930 |
| BspDI | ATCGAT | 1 cut(s) | 650 |
| BspFNI | CGCG | 3 cut(s) | 394, 1596, 1733 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 4 cut(s) | 175, 994, 1400, 1662 |
| BspMI | ACCTGC | 2 cut(s) | 1545, 1656 |
| BspOI | GCTAGC | 3 cut(s) | 501, 1110, 1152 |
| BspPI | GGATC | 2 cut(s) | 366, 1926 |
| BspQI | GCTCTTC | 1 cut(s) | 1410 |
| BspT107I | GGYRCC | 3 cut(s) | 173, 1398, 1660 |
| BspTNI | GGTCTC | 2 cut(s) | 1340, 1730 |
| BsrBI | CCGCTC | 1 cut(s) | 1870 |
| BsrFI | RCCGGY | 1 cut(s) | 170 |
| BsrI | ACTGG | 3 cut(s) | 272, 1920, 1992 |
| BssAI | RCCGGY | 1 cut(s) | 170 |
| BssMI | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| BssNAI | GTATAC | 1 cut(s) | 837 |
| BssT1I | CCWWGG | 6 cut(s) | 296, 1040, 1053, 1073, 1791, 2013 |
| Bst1107I | GTATAC | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 4 cut(s) | 85, 366, 556, 1502 |
| Bst4CI | ACNGT | 3 cut(s) | 247, 606, 1927 |
| Bst6I | CTCTTC | 1 cut(s) | 1410 |
| BstDEI | CTNAG | 7 cut(s) | 188, 451, 511, 543, 1848, 1866, 1938 |
| BstDSI | CCRYGG | 3 cut(s) | 1040, 1053, 1791 |
| BstEII | GGTNACC | 1 cut(s) | 1786 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 88 |
| BstF5I | GGATG | 5 cut(s) | 388, 741, 888, 1001, 2041 |
| BstFNI | CGCG | 3 cut(s) | 394, 1596, 1733 |
| BstH2I | RGCGCY | 1 cut(s) | 1146 |
| BstHHI | GCGC | 4 cut(s) | 450, 510, 1145, 1598 |
| BstKTI | GATC | 8 cut(s) | 187, 361, 671, 700, 1353, 1825, 1921, 2089 |
| BstMAI | GTCTC | 6 cut(s) | 45, 391, 452, 512, 1340, 1730 |
| BstMBI | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| BstMCI | CGRYCG | 1 cut(s) | 700 |
| BstNI | CCWGG | 4 cut(s) | 85, 366, 556, 1502 |
| BstNSI | RCATGY | 1 cut(s) | 1775 |
| BstPI | GGTNACC | 1 cut(s) | 1786 |
| BstSFI | CTRYAG | 2 cut(s) | 1028, 1260 |
| BstSLI | GKGCMC | 2 cut(s) | 178, 611 |
| BstUI | CGCG | 3 cut(s) | 394, 1596, 1733 |
| BstV1I | GCAGC | 6 cut(s) | 16, 154, 384, 1638, 2014, 2017 |
| BstV2I | GAAGAC | 2 cut(s) | 530, 589 |
| BstX2I | RGATCY | 3 cut(s) | 358, 668, 1350 |
| BstYI | RGATCY | 3 cut(s) | 358, 668, 1350 |
| BstZ17I | GTATAC | 1 cut(s) | 837 |
| Bsu15I | ATCGAT | 1 cut(s) | 650 |
| BsuRI | GGCC | 4 cut(s) | 94, 138, 1214, 1799 |
| BsuTUI | ATCGAT | 1 cut(s) | 650 |
| BtgI | CCRYGG | 3 cut(s) | 1040, 1053, 1791 |
| BtgZI | GCGATG | 1 cut(s) | 2040 |
| BtrI | CACGTC | 1 cut(s) | 943 |
| BtsCI | GGATG | 5 cut(s) | 388, 741, 888, 1001, 2041 |
| BtsI | GCAGTG | 2 cut(s) | 53, 1499 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 1499 |
| BveI | ACCTGC | 2 cut(s) | 1545, 1656 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2008 |
| CciI | TCATGA | 1 cut(s) | 277 |
| CfoI | GCGC | 4 cut(s) | 450, 510, 1145, 1598 |
| Cfr10I | RCCGGY | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 2 cut(s) | 1627, 1923 |
| Cfr9I | CCCGGG | 1 cut(s) | 1667 |
| ClaI | ATCGAT | 1 cut(s) | 650 |
| CpoI | CGGWCCG | 1 cut(s) | 1923 |
| CseI | GACGC | 1 cut(s) | 880 |
| Csp6I | GTAC | 5 cut(s) | 104, 262, 574, 729, 1436 |
| CspI | CGGWCCG | 1 cut(s) | 1923 |
| CviAII | CATG | 8 cut(s) | 278, 746, 986, 1041, 1054, 1718, 1772, 1792 |
| CviQI | GTAC | 5 cut(s) | 104, 262, 574, 729, 1436 |
| DdeI | CTNAG | 7 cut(s) | 188, 451, 511, 543, 1848, 1866, 1938 |
| DpnI | GATC | 8 cut(s) | 186, 360, 670, 699, 1352, 1824, 1920, 2088 |
| DpnII | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| DraIII | CACNNNGTG | 2 cut(s) | 59, 1563 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1021, 1929 |
| EaeI | YGGCCR | 2 cut(s) | 1212, 1797 |
| Eam1104I | CTCTTC | 1 cut(s) | 1410 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1021, 1929 |
| EarI | CTCTTC | 1 cut(s) | 1410 |
| EciI | GGCGGA | 3 cut(s) | 1445, 1767, 2006 |
| Ecl136II | GAGCTC | 1 cut(s) | 1945 |
| Eco130I | CCWWGG | 6 cut(s) | 296, 1040, 1053, 1073, 1791, 2013 |
| Eco24I | GRGCYC | 3 cut(s) | 206, 1750, 1947 |
| Eco31I | GGTCTC | 2 cut(s) | 1340, 1730 |
| Eco47I | GGWCC | 2 cut(s) | 1627, 1923 |
| Eco53kI | GAGCTC | 1 cut(s) | 1945 |
| Eco57I | CTGAAG | 2 cut(s) | 308, 2087 |
| Eco88I | CYCGRG | 2 cut(s) | 205, 1667 |
| Eco91I | GGTNACC | 1 cut(s) | 1786 |
| EcoICRI | GAGCTC | 1 cut(s) | 1945 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 88 |
| EcoO65I | GGTNACC | 1 cut(s) | 1786 |
| EcoRII | CCWGG | 4 cut(s) | 83, 364, 554, 1500 |
| EcoT14I | CCWWGG | 6 cut(s) | 296, 1040, 1053, 1073, 1791, 2013 |
| EcoT38I | GRGCYC | 3 cut(s) | 206, 1750, 1947 |
| ErhI | CCWWGG | 6 cut(s) | 296, 1040, 1053, 1073, 1791, 2013 |
| FaeI | CATG | 8 cut(s) | 281, 749, 989, 1044, 1057, 1721, 1775, 1795 |
| FaqI | GGGAC | 2 cut(s) | 123, 818 |
| FatI | CATG | 8 cut(s) | 277, 745, 985, 1040, 1053, 1717, 1771, 1791 |
| FauI | CCCGC | 9 cut(s) | 307, 1110, 1175, 1231, 1272, 1475, 1612, 1863, 1950 |
| FauNDI | CATATG | 1 cut(s) | 1364 |
| FbaI | TGATCA | 1 cut(s) | 2086 |
| FblI | GTMKAC | 2 cut(s) | 343, 836 |
| FokI | GGATG | 5 cut(s) | 395, 728, 895, 988, 2048 |
| FriOI | GRGCYC | 3 cut(s) | 206, 1750, 1947 |
| GlaI | GCGC | 4 cut(s) | 449, 509, 1144, 1597 |
| GsaI | CCCAGC | 1 cut(s) | 1904 |
| GsuI | CTGGAG | 1 cut(s) | 577 |
| HaeII | RGCGCY | 1 cut(s) | 1146 |
| HaeIII | GGCC | 4 cut(s) | 94, 138, 1214, 1799 |
| HapII | CCGG | 7 cut(s) | 171, 199, 377, 921, 1560, 1668, 1784 |
| HgaI | GACGC | 1 cut(s) | 880 |
| HhaI | GCGC | 4 cut(s) | 450, 510, 1145, 1598 |
| Hin1II | CATG | 8 cut(s) | 281, 749, 989, 1044, 1057, 1721, 1775, 1795 |
| Hin6I | GCGC | 4 cut(s) | 448, 508, 1143, 1596 |
| HinP1I | GCGC | 4 cut(s) | 448, 508, 1143, 1596 |
| HincII | GTYRAC | 1 cut(s) | 344 |
| HindII | GTYRAC | 1 cut(s) | 344 |
| HindIII | AAGCTT | 1 cut(s) | 708 |
| HpaII | CCGG | 7 cut(s) | 171, 199, 377, 921, 1560, 1668, 1784 |
| HphI | GGTGA | 6 cut(s) | 706, 923, 990, 1180, 1549, 1798 |
| Hpy166II | GTNNAC | 3 cut(s) | 344, 837, 1267 |
| Hpy188III | TCNNGA | 4 cut(s) | 278, 904, 1826, 1855 |
| Hpy8I | GTNNAC | 3 cut(s) | 344, 837, 1267 |
| Hpy99I | CGWCG | 4 cut(s) | 529, 596, 896, 944 |
| HpyAV | CCTTC | 5 cut(s) | 332, 703, 727, 1107, 1300 |
| HpyCH4III | ACNGT | 3 cut(s) | 247, 606, 1927 |
| HpyCH4IV | ACGT | 2 cut(s) | 942, 1766 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 90, 412, 473, 845, 973, 1644, 1681, 1813 |
| HpyF3I | CTNAG | 7 cut(s) | 188, 451, 511, 543, 1848, 1866, 1938 |
| HpySE526I | ACGT | 2 cut(s) | 942, 1766 |
| Hsp92II | CATG | 8 cut(s) | 281, 749, 989, 1044, 1057, 1721, 1775, 1795 |
| HspAI | GCGC | 4 cut(s) | 448, 508, 1143, 1596 |
| Ksp22I | TGATCA | 1 cut(s) | 2086 |
| Kzo9I | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| LguI | GCTCTTC | 1 cut(s) | 1410 |
| LmnI | GCTCC | 7 cut(s) | 695, 1123, 1489, 1714, 1780, 1942, 1999 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 154, 384, 1638, 2014, 2017 |
| LweI | GCATC | 4 cut(s) | 982, 1711, 2017, 2026 |
| MaeII | ACGT | 2 cut(s) | 942, 1766 |
| MaeIII | GTNAC | 6 cut(s) | 239, 388, 1285, 1296, 1609, 1786 |
| MalI | GATC | 8 cut(s) | 186, 360, 670, 699, 1352, 1824, 1920, 2088 |
| MbiI | CCGCTC | 1 cut(s) | 1870 |
| MboI | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| MboII | GAAGA | 7 cut(s) | 530, 589, 635, 678, 1301, 1427, 1771 |
| MfeI | CAATTG | 1 cut(s) | 1370 |
| MflI | RGATCY | 3 cut(s) | 358, 668, 1350 |
| MhlI | GDGCHC | 6 cut(s) | 23, 178, 206, 611, 1750, 1947 |
| MlsI | TGGCCA | 1 cut(s) | 1214 |
| MluCI | AATT | 2 cut(s) | 1370, 1568 |
| MluNI | TGGCCA | 1 cut(s) | 1214 |
| MlyI | GAGTC | 5 cut(s) | 327, 514, 941, 959, 1823 |
| MmeI | TCCRAC | 1 cut(s) | 1958 |
| Mox20I | TGGCCA | 1 cut(s) | 1214 |
| MscI | TGGCCA | 1 cut(s) | 1214 |
| MslI | CAYNNNNRTG | 1 cut(s) | 282 |
| Msp20I | TGGCCA | 1 cut(s) | 1214 |
| MspA1I | CMGCKG | 3 cut(s) | 328, 1657, 2008 |
| MspI | CCGG | 7 cut(s) | 171, 199, 377, 921, 1560, 1668, 1784 |
| MunI | CAATTG | 1 cut(s) | 1370 |
| Mva1269I | GAATGC | 2 cut(s) | 169, 2027 |
| MvaI | CCWGG | 4 cut(s) | 85, 366, 556, 1502 |
| MvnI | CGCG | 3 cut(s) | 394, 1596, 1733 |
| NciI | CCSGG | 7 cut(s) | 200, 377, 922, 1561, 1668, 1669, 1784 |
| NcoI | CCATGG | 3 cut(s) | 1040, 1053, 1791 |
| NdeI | CATATG | 1 cut(s) | 1364 |
| NdeII | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| NheI | GCTAGC | 3 cut(s) | 497, 1106, 1148 |
| NlaIII | CATG | 8 cut(s) | 281, 749, 989, 1044, 1057, 1721, 1775, 1795 |
| NlaIV | GGNNCC | 4 cut(s) | 175, 994, 1400, 1662 |
| NmuCI | GTSAC | 3 cut(s) | 239, 1285, 1786 |
| NspI | RCATGY | 1 cut(s) | 1775 |
| PaeI | GCATGC | 1 cut(s) | 1775 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PciSI | GCTCTTC | 1 cut(s) | 1410 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 936, 1838, 1927 |
| PctI | GAATGC | 2 cut(s) | 169, 2027 |
| PflFI | GACNNNGTC | 1 cut(s) | 523 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1041, 1365 |
| Ple19I | CGATCG | 1 cut(s) | 700 |
| PleI | GAGTC | 5 cut(s) | 326, 514, 940, 959, 1823 |
| PpsI | GAGTC | 5 cut(s) | 326, 514, 940, 959, 1823 |
| Psp124BI | GAGCTC | 1 cut(s) | 1947 |
| Psp6I | CCWGG | 4 cut(s) | 83, 364, 554, 1500 |
| PspEI | GGTNACC | 1 cut(s) | 1786 |
| PspFI | CCCAGC | 1 cut(s) | 1900 |
| PspGI | CCWGG | 4 cut(s) | 83, 364, 554, 1500 |
| PspN4I | GGNNCC | 4 cut(s) | 175, 994, 1400, 1662 |
| PspPI | GGNCC | 2 cut(s) | 1627, 1923 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1835, 1867 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2008 |
| PsuI | RGATCY | 3 cut(s) | 358, 668, 1350 |
| PsyI | GACNNNGTC | 1 cut(s) | 523 |
| PvuI | CGATCG | 1 cut(s) | 700 |
| PvuII | CAGCTG | 2 cut(s) | 328, 2008 |
| RsaI | GTAC | 5 cut(s) | 105, 263, 575, 730, 1437 |
| RsaNI | GTAC | 5 cut(s) | 104, 262, 574, 729, 1436 |
| RseI | CAYNNNNRTG | 1 cut(s) | 282 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1923 |
| RsrII | CGGWCCG | 1 cut(s) | 1923 |
| SacI | GAGCTC | 1 cut(s) | 1947 |
| SalI | GTCGAC | 1 cut(s) | 342 |
| SapI | GCTCTTC | 1 cut(s) | 1410 |
| Sau3AI | GATC | 8 cut(s) | 184, 358, 668, 697, 1350, 1822, 1918, 2086 |
| Sau96I | GGNCC | 2 cut(s) | 1627, 1923 |
| SchI | GAGTC | 5 cut(s) | 327, 514, 941, 959, 1823 |
| SduI | GDGCHC | 6 cut(s) | 23, 178, 206, 611, 1750, 1947 |
| SfaNI | GCATC | 4 cut(s) | 982, 1711, 2017, 2026 |
| SfcI | CTRYAG | 2 cut(s) | 1028, 1260 |
| SinI | GGWCC | 2 cut(s) | 1627, 1923 |
| SmaI | CCCGGG | 1 cut(s) | 1669 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 282 |
| SmlI | CTYRAG | 4 cut(s) | 904, 1967, 1977, 2075 |
| SmoI | CTYRAG | 4 cut(s) | 904, 1967, 1977, 2075 |
| SphI | GCATGC | 1 cut(s) | 1775 |
| Sse9I | AATT | 2 cut(s) | 1370, 1568 |
| SspI | AATATT | 1 cut(s) | 2056 |
| SstI | GAGCTC | 1 cut(s) | 1947 |
| StyI | CCWWGG | 6 cut(s) | 296, 1040, 1053, 1073, 1791, 2013 |
| TaaI | ACNGT | 3 cut(s) | 247, 606, 1927 |
| TaiI | ACGT | 2 cut(s) | 945, 1769 |
| TaqII | GACCGA | 1 cut(s) | 1874 |
| TasI | AATT | 2 cut(s) | 1370, 1568 |
| TauI | GCSGC | 8 cut(s) | 372, 1106, 1148, 1259, 1657, 1696, 1727, 1799 |
| TscAI | CASTG | 2 cut(s) | 60, 1499 |
| TseFI | GTSAC | 3 cut(s) | 239, 1285, 1786 |
| TseI | GCWGC | 6 cut(s) | 4, 167, 372, 1651, 2002, 2005 |
| Tsp45I | GTSAC | 3 cut(s) | 239, 1285, 1786 |
| TspDTI | ATGAA | 1 cut(s) | 1289 |
| TspGWI | ACGGA | 4 cut(s) | 513, 628, 1538, 1919 |
| TspMI | CCCGGG | 1 cut(s) | 1667 |
| TspRI | CASTG | 2 cut(s) | 60, 1499 |
| Tth111I | GACNNNGTC | 1 cut(s) | 523 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1041, 1365 |
| VpaK11BI | GGWCC | 2 cut(s) | 1627, 1923 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 88 |
| XbaI | TCTAGA | 1 cut(s) | 1825 |
| XceI | RCATGY | 1 cut(s) | 1775 |
| XmaI | CCCGGG | 1 cut(s) | 1667 |
| XmaJI | CCTAGG | 1 cut(s) | 1073 |
| XmiI | GTMKAC | 2 cut(s) | 343, 836 |