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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 251 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 261 |
| AccI | GTMKAC | 1 cut(s) | 489 |
| AccII | CGCG | 1 cut(s) | 354 |
| AclWI | GGATC | 2 cut(s) | 37, 503 |
| AcoI | YGGCCR | 1 cut(s) | 222 |
| AcuI | CTGAAG | 2 cut(s) | 32, 495 |
| AcyI | GRCGYC | 2 cut(s) | 252, 329 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 52, 261, 311, 357, 378, 379 |
| AgeI | ACCGGT | 1 cut(s) | 461 |
| AgsI | TTSAA | 1 cut(s) | 149 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 405 |
| AjnI | CCWGG | 3 cut(s) | 108, 210, 280 |
| AluBI | AGCT | 3 cut(s) | 74, 137, 288 |
| AluI | AGCT | 3 cut(s) | 74, 137, 288 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 1 cut(s) | 392 |
| AlwI | GGATC | 2 cut(s) | 37, 503 |
| Ama87I | CYCGRG | 2 cut(s) | 378, 417 |
| AoxI | GGCC | 4 cut(s) | 201, 222, 369, 456 |
| ApeKI | GCWGC | 3 cut(s) | 131, 134, 194 |
| AsiGI | ACCGGT | 1 cut(s) | 461 |
| AspLEI | GCGC | 3 cut(s) | 184, 254, 356 |
| AspS9I | GGNCC | 3 cut(s) | 10, 370, 423 |
| AsuC2I | CCSGG | 3 cut(s) | 14, 379, 380 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 107, 326 |
| AvaI | CYCGRG | 2 cut(s) | 378, 417 |
| AvaII | GGWCC | 2 cut(s) | 10, 423 |
| BaeGI | GKGCMC | 1 cut(s) | 211 |
| BalI | TGGCCA | 1 cut(s) | 224 |
| BanI | GGYRCC | 1 cut(s) | 251 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvCI | CCTCAGC | 2 cut(s) | 117, 450 |
| BbvI | GCAGC | 3 cut(s) | 118, 146, 206 |
| BccI | CCATC | 2 cut(s) | 380, 453 |
| BceAI | ACGGC | 1 cut(s) | 111 |
| BciT130I | CCWGG | 3 cut(s) | 110, 212, 282 |
| BcnI | CCSGG | 3 cut(s) | 14, 379, 380 |
| BcoDI | GTCTC | 1 cut(s) | 392 |
| BfaI | CTAG | 1 cut(s) | 365 |
| BfmI | CTRYAG | 1 cut(s) | 132 |
| BfoI | RGCGCY | 2 cut(s) | 185, 255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| BisI | GCNGC | 8 cut(s) | 63, 86, 132, 135, 195, 242, 273, 369 |
| BlsI | GCNGC | 8 cut(s) | 64, 87, 133, 136, 196, 243, 274, 370 |
| Bme1390I | CCNGG | 6 cut(s) | 14, 110, 212, 282, 379, 380 |
| Bme18I | GGWCC | 2 cut(s) | 10, 423 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 405 |
| BmeT110I | CYCGRG | 2 cut(s) | 378, 417 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 370, 423 |
| BmiI | GGNNCC | 4 cut(s) | 11, 253, 362, 424 |
| BmrFI | CCNGG | 6 cut(s) | 14, 110, 212, 282, 379, 380 |
| BmrI | ACTGGG | 2 cut(s) | 271, 399 |
| BmuI | ACTGGG | 2 cut(s) | 271, 399 |
| BpmI | CTGGAG | 3 cut(s) | 110, 131, 291 |
| Bpu10I | CCTNAGC | 3 cut(s) | 24, 117, 450 |
| BpuMI | CCSGG | 3 cut(s) | 14, 379, 380 |
| BsaHI | GRCGYC | 2 cut(s) | 252, 329 |
| BsaJI | CCNNGG | 5 cut(s) | 198, 210, 342, 378, 418 |
| BsaWI | WCCGGW | 1 cut(s) | 461 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 52, 261, 311, 357, 378, 379 |
| Bse118I | RCCGGY | 1 cut(s) | 461 |
| Bse1I | ACTGG | 4 cut(s) | 204, 225, 266, 405 |
| BseBI | CCWGG | 3 cut(s) | 110, 212, 282 |
| BseDI | CCNNGG | 5 cut(s) | 198, 210, 342, 378, 418 |
| BseGI | GGATG | 2 cut(s) | 391, 445 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 52, 261, 311, 357, 378, 379 |
| BseMII | CTCAG | 2 cut(s) | 108, 464 |
| BseNI | ACTGG | 4 cut(s) | 204, 225, 266, 405 |
| BseSI | GKGCMC | 1 cut(s) | 211 |
| BseXI | GCAGC | 3 cut(s) | 118, 146, 206 |
| BseYI | CCCAGC | 3 cut(s) | 288, 321, 356 |
| Bsh1236I | CGCG | 1 cut(s) | 354 |
| BshFI | GGCC | 4 cut(s) | 203, 224, 371, 458 |
| BshNI | GGYRCC | 1 cut(s) | 251 |
| BshTI | ACCGGT | 1 cut(s) | 461 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BsiHKCI | CYCGRG | 2 cut(s) | 378, 417 |
| BsiSI | CCGG | 3 cut(s) | 13, 379, 462 |
| BslFI | GGGAC | 2 cut(s) | 23, 393 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 52, 261, 311, 357, 378, 379 |
| BsmAI | GTCTC | 1 cut(s) | 392 |
| BsmFI | GGGAC | 2 cut(s) | 23, 393 |
| BsnI | GGCC | 4 cut(s) | 203, 224, 371, 458 |
| BsoBI | CYCGRG | 2 cut(s) | 378, 417 |
| Bsp1286I | GDGCHC | 2 cut(s) | 174, 211 |
| Bsp143I | GATC | 2 cut(s) | 42, 508 |
| BspANI | GGCC | 4 cut(s) | 203, 224, 371, 458 |
| BspCNI | CTCAG | 2 cut(s) | 109, 463 |
| BspFNI | CGCG | 1 cut(s) | 354 |
| BspLI | GGNNCC | 4 cut(s) | 11, 253, 362, 424 |
| BspMAI | CTGCAG | 1 cut(s) | 136 |
| BspPI | GGATC | 2 cut(s) | 37, 503 |
| BspT107I | GGYRCC | 1 cut(s) | 251 |
| BsrFI | RCCGGY | 1 cut(s) | 461 |
| BsrI | ACTGG | 4 cut(s) | 204, 225, 266, 405 |
| BssAI | RCCGGY | 1 cut(s) | 461 |
| BssECI | CCNNGG | 5 cut(s) | 198, 210, 342, 378, 418 |
| BssMI | GATC | 2 cut(s) | 42, 508 |
| BssNI | GRCGYC | 2 cut(s) | 252, 329 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 212, 282 |
| BstACI | GRCGYC | 2 cut(s) | 252, 329 |
| BstC8I | GCNNGC | 3 cut(s) | 106, 302, 456 |
| BstDEI | CTNAG | 3 cut(s) | 24, 117, 450 |
| BstEII | GGTNACC | 1 cut(s) | 16 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 309 |
| BstF5I | GGATG | 2 cut(s) | 391, 445 |
| BstFNI | CGCG | 1 cut(s) | 354 |
| BstH2I | RGCGCY | 2 cut(s) | 185, 255 |
| BstHHI | GCGC | 3 cut(s) | 184, 254, 356 |
| BstKTI | GATC | 2 cut(s) | 45, 511 |
| BstMAI | GTCTC | 1 cut(s) | 392 |
| BstMBI | GATC | 2 cut(s) | 42, 508 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 71, 140, 200, 215, 272, 353, 512 |
| BstNI | CCWGG | 3 cut(s) | 110, 212, 282 |
| BstPI | GGTNACC | 1 cut(s) | 16 |
| BstSCI | CCNGG | 6 cut(s) | 12, 108, 210, 280, 377, 378 |
| BstSFI | CTRYAG | 1 cut(s) | 132 |
| BstSLI | GKGCMC | 1 cut(s) | 211 |
| BstUI | CGCG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 3 cut(s) | 118, 146, 206 |
| BstX2I | RGATCY | 1 cut(s) | 42 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 211, 288 |
| BstYI | RGATCY | 1 cut(s) | 42 |
| BsuRI | GGCC | 4 cut(s) | 203, 224, 371, 458 |
| BtsCI | GGATG | 2 cut(s) | 391, 445 |
| BtsIMutI | CAGTG | 2 cut(s) | 211, 218 |
| Cac8I | GCNNGC | 3 cut(s) | 106, 302, 456 |
| CfoI | GCGC | 3 cut(s) | 184, 254, 356 |
| Cfr10I | RCCGGY | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 370, 423 |
| Cfr9I | CCCGGG | 1 cut(s) | 378 |
| CseI | GACGC | 2 cut(s) | 200, 337 |
| CspAI | ACCGGT | 1 cut(s) | 461 |
| DdeI | CTNAG | 3 cut(s) | 24, 117, 450 |
| DinI | GGCGCC | 1 cut(s) | 253 |
| DpnI | GATC | 2 cut(s) | 44, 510 |
| DpnII | GATC | 2 cut(s) | 42, 508 |
| DriI | GACNNNNNGTC | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 222 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 405 |
| EciI | GGCGGA | 3 cut(s) | 49, 182, 398 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco47I | GGWCC | 2 cut(s) | 10, 423 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 495 |
| Eco88I | CYCGRG | 2 cut(s) | 378, 417 |
| Eco91I | GGTNACC | 1 cut(s) | 16 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 309 |
| EcoO65I | GGTNACC | 1 cut(s) | 16 |
| EcoRII | CCWGG | 3 cut(s) | 108, 210, 280 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| EgeI | GGCGCC | 1 cut(s) | 253 |
| EheI | GGCGCC | 1 cut(s) | 253 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| FaiI | YATR | 2 cut(s) | 154, 156 |
| FaqI | GGGAC | 2 cut(s) | 23, 393 |
| FauI | CCCGC | 4 cut(s) | 45, 359, 476, 520 |
| FblI | GTMKAC | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 8 cut(s) | 63, 86, 132, 135, 195, 242, 273, 369 |
| FokI | GGATG | 2 cut(s) | 398, 432 |
| Fsp4HI | GCNGC | 8 cut(s) | 63, 86, 132, 135, 195, 242, 273, 369 |
| FspBI | CTAG | 1 cut(s) | 365 |
| GlaI | GCGC | 3 cut(s) | 183, 253, 355 |
| GluI | GCNGC | 8 cut(s) | 63, 86, 132, 135, 195, 242, 273, 369 |
| GsaI | CCCAGC | 3 cut(s) | 292, 325, 360 |
| GsuI | CTGGAG | 3 cut(s) | 110, 131, 291 |
| HaeII | RGCGCY | 2 cut(s) | 185, 255 |
| HaeIII | GGCC | 4 cut(s) | 203, 224, 371, 458 |
| HapII | CCGG | 3 cut(s) | 13, 379, 462 |
| HgaI | GACGC | 2 cut(s) | 200, 337 |
| HhaI | GCGC | 3 cut(s) | 184, 254, 356 |
| Hin1I | GRCGYC | 2 cut(s) | 252, 329 |
| Hin6I | GCGC | 3 cut(s) | 182, 252, 354 |
| HinP1I | GCGC | 3 cut(s) | 182, 252, 354 |
| HincII | GTYRAC | 1 cut(s) | 490 |
| HindII | GTYRAC | 1 cut(s) | 490 |
| HinfI | GANTC | 5 cut(s) | 56, 149, 317, 400, 436 |
| HpaII | CCGG | 3 cut(s) | 13, 379, 462 |
| HphI | GGTGA | 3 cut(s) | 28, 107, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 490 |
| Hpy188I | TCNGA | 2 cut(s) | 343, 427 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy8I | GTNNAC | 1 cut(s) | 490 |
| HpyAV | CCTTC | 4 cut(s) | 56, 172, 305, 470 |
| HpyCH4V | TGCA | 1 cut(s) | 134 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 71, 140, 200, 215, 272, 353, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 117, 450 |
| Hsp92I | GRCGYC | 2 cut(s) | 252, 329 |
| HspAI | GCGC | 3 cut(s) | 182, 252, 354 |
| KasI | GGCGCC | 1 cut(s) | 251 |
| Kzo9I | GATC | 2 cut(s) | 42, 508 |
| LmnI | GCTCC | 2 cut(s) | 169, 446 |
| Lsp1109I | GCAGC | 3 cut(s) | 118, 146, 206 |
| MaeI | CTAG | 1 cut(s) | 365 |
| MaeIII | GTNAC | 2 cut(s) | 16, 314 |
| MalI | GATC | 2 cut(s) | 44, 510 |
| MboI | GATC | 2 cut(s) | 42, 508 |
| MboII | GAAGA | 1 cut(s) | 43 |
| MflI | RGATCY | 1 cut(s) | 42 |
| MhlI | GDGCHC | 2 cut(s) | 174, 211 |
| MlsI | TGGCCA | 1 cut(s) | 224 |
| MluCI | AATT | 1 cut(s) | 36 |
| MluNI | TGGCCA | 1 cut(s) | 224 |
| Mly113I | GGCGCC | 1 cut(s) | 252 |
| MlyI | GAGTC | 4 cut(s) | 65, 311, 394, 445 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| MnlI | CCTC | 8 cut(s) | 85, 91, 106, 112, 315, 337, 413, 459 |
| Mox20I | TGGCCA | 1 cut(s) | 224 |
| MscI | TGGCCA | 1 cut(s) | 224 |
| Msp20I | TGGCCA | 1 cut(s) | 224 |
| MspA1I | CMGCKG | 3 cut(s) | 52, 137, 325 |
| MspI | CCGG | 3 cut(s) | 13, 379, 462 |
| MspR9I | CCNGG | 6 cut(s) | 14, 110, 212, 282, 379, 380 |
| MvaI | CCWGG | 3 cut(s) | 110, 212, 282 |
| MvnI | CGCG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 71, 140, 200, 215, 272, 353, 512 |
| NarI | GGCGCC | 1 cut(s) | 252 |
| NciI | CCSGG | 3 cut(s) | 14, 379, 380 |
| NdeII | GATC | 2 cut(s) | 42, 508 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 253, 362, 424 |
| NmuCI | GTSAC | 2 cut(s) | 16, 314 |
| PfeI | GAWTC | 1 cut(s) | 149 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 261 |
| PinAI | ACCGGT | 1 cut(s) | 461 |
| PkrI | GCNGC | 8 cut(s) | 64, 87, 133, 136, 196, 243, 274, 370 |
| PleI | GAGTC | 4 cut(s) | 64, 311, 394, 444 |
| PluTI | GGCGCC | 1 cut(s) | 255 |
| PpsI | GAGTC | 4 cut(s) | 64, 311, 394, 444 |
| Psp6I | CCWGG | 3 cut(s) | 108, 210, 280 |
| PspEI | GGTNACC | 1 cut(s) | 16 |
| PspFI | CCCAGC | 3 cut(s) | 288, 321, 356 |
| PspGI | CCWGG | 3 cut(s) | 108, 210, 280 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 253, 362, 424 |
| PspPI | GGNCC | 3 cut(s) | 10, 370, 423 |
| PstI | CTGCAG | 1 cut(s) | 136 |
| PsuI | RGATCY | 1 cut(s) | 42 |
| PvuII | CAGCTG | 1 cut(s) | 137 |
| SalI | GTCGAC | 1 cut(s) | 488 |
| SatI | GCNGC | 8 cut(s) | 63, 86, 132, 135, 195, 242, 273, 369 |
| Sau3AI | GATC | 2 cut(s) | 42, 508 |
| Sau96I | GGNCC | 3 cut(s) | 10, 370, 423 |
| SchI | GAGTC | 4 cut(s) | 65, 311, 394, 445 |
| ScrFI | CCNGG | 6 cut(s) | 14, 110, 212, 282, 379, 380 |
| SduI | GDGCHC | 2 cut(s) | 174, 211 |
| SetI | ASST | 7 cut(s) | 76, 102, 139, 286, 290, 316, 481 |
| SfcI | CTRYAG | 1 cut(s) | 132 |
| SfoI | GGCGCC | 1 cut(s) | 253 |
| SgrAI | CRCCGGYG | 1 cut(s) | 461 |
| SinI | GGWCC | 2 cut(s) | 10, 423 |
| SmaI | CCCGGG | 1 cut(s) | 380 |
| Sse9I | AATT | 1 cut(s) | 36 |
| SspDI | GGCGCC | 1 cut(s) | 251 |
| SspMI | CTAG | 1 cut(s) | 365 |
| StyD4I | CCNGG | 6 cut(s) | 12, 108, 210, 280, 377, 378 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaqI | TCGA | 1 cut(s) | 489 |
| TasI | AATT | 1 cut(s) | 36 |
| TauI | GCSGC | 5 cut(s) | 65, 88, 244, 275, 371 |
| TfiI | GAWTC | 1 cut(s) | 149 |
| TscAI | CASTG | 2 cut(s) | 211, 225 |
| TseFI | GTSAC | 2 cut(s) | 16, 314 |
| TseI | GCWGC | 3 cut(s) | 131, 134, 194 |
| Tsp45I | GTSAC | 2 cut(s) | 16, 314 |
| TspMI | CCCGGG | 1 cut(s) | 378 |
| TspRI | CASTG | 2 cut(s) | 211, 225 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 261 |
| VpaK11BI | GGWCC | 2 cut(s) | 10, 423 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 309 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 211 |
| XmaI | CCCGGG | 1 cut(s) | 378 |
| XmiI | GTMKAC | 1 cut(s) | 489 |
| XspI | CTAG | 1 cut(s) | 365 |