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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1003 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1706, 2476 |
| Acc36I | ACCTGC | 2 cut(s) | 572, 1003 |
| Acc65I | GGTACC | 1 cut(s) | 2555 |
| AccB1I | GGYRCC | 6 cut(s) | 784, 1315, 1983, 2339, 2432, 2555 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 154, 2349 |
| AccBSI | CCGCTC | 6 cut(s) | 180, 1768, 1981, 2059, 2398, 2582 |
| AccI | GTMKAC | 2 cut(s) | 1272, 1581 |
| AccII | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| AclWI | GGATC | 4 cut(s) | 1051, 1064, 2115, 2134 |
| AcoI | YGGCCR | 3 cut(s) | 492, 1381, 2310 |
| AcsI | RAATTY | 1 cut(s) | 1721 |
| AcuI | CTGAAG | 4 cut(s) | 124, 2123, 2129, 2348 |
| AcyI | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| AdeI | CACNNNGTG | 1 cut(s) | 2408 |
| AfaI | GTAC | 4 cut(s) | 286, 1238, 2390, 2557 |
| AflIII | ACRYGT | 1 cut(s) | 1028 |
| AgeI | ACCGGT | 1 cut(s) | 1598 |
| AgsI | TTSAA | 3 cut(s) | 1654, 2254, 2284 |
| AjiI | CACGTC | 2 cut(s) | 1029, 2053 |
| AjnI | CCWGG | 6 cut(s) | 439, 567, 842, 1895, 2075, 2205 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1290, 1322 |
| Alw21I | GWGCWC | 2 cut(s) | 1431, 1516 |
| Alw26I | GTCTC | 9 cut(s) | 68, 583, 644, 705, 1601, 1937, 2016, 2484, 2518 |
| AlwI | GGATC | 4 cut(s) | 1051, 1064, 2115, 2134 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 154 |
| Ama87I | CYCGRG | 2 cut(s) | 885, 2019 |
| AoxI | GGCC | 7 cut(s) | 446, 492, 977, 1381, 1656, 1953, 2310 |
| ApaI | GGGCCC | 1 cut(s) | 450 |
| ApoI | RAATTY | 1 cut(s) | 1721 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 757, 789 |
| AsiGI | ACCGGT | 1 cut(s) | 1598 |
| Asp718I | GGTACC | 1 cut(s) | 2555 |
| AspS9I | GGNCC | 8 cut(s) | 8, 446, 447, 1201, 1618, 1673, 2361, 2589 |
| AsuC2I | CCSGG | 2 cut(s) | 470, 1161 |
| AsuHPI | GGTGA | 4 cut(s) | 215, 553, 2137, 2188 |
| AsuII | TTCGAA | 2 cut(s) | 347, 1188 |
| AsuNHI | GCTAGC | 1 cut(s) | 628 |
| AvaI | CYCGRG | 2 cut(s) | 885, 2019 |
| AvaII | GGWCC | 6 cut(s) | 8, 1201, 1618, 1673, 2361, 2589 |
| AxyI | CCTNAGG | 1 cut(s) | 2427 |
| BaeGI | GKGCMC | 3 cut(s) | 450, 789, 1848 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2547, 2580 |
| BalI | TGGCCA | 1 cut(s) | 2312 |
| BamHI | GGATCC | 1 cut(s) | 1056 |
| BanI | GGYRCC | 6 cut(s) | 784, 1315, 1983, 2339, 2432, 2555 |
| BanII | GRGCYC | 4 cut(s) | 450, 1147, 1516, 2576 |
| BauI | CACGAG | 4 cut(s) | 1004, 1140, 1539, 2583 |
| BbsI | GAAGAC | 1 cut(s) | 1593 |
| Bbv12I | GWGCWC | 2 cut(s) | 1431, 1516 |
| BbvCI | CCTCAGC | 1 cut(s) | 1343 |
| BccI | CCATC | 6 cut(s) | 602, 663, 724, 747, 959, 2546 |
| BceAI | ACGGC | 1 cut(s) | 2024 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1574, 1608, 2204, 2238 |
| BciT130I | CCWGG | 6 cut(s) | 441, 569, 844, 1897, 2077, 2207 |
| BciVI | GTATCC | 1 cut(s) | 892 |
| BclI | TGATCA | 1 cut(s) | 1816 |
| BcnI | CCSGG | 2 cut(s) | 470, 1161 |
| BcoDI | GTCTC | 9 cut(s) | 68, 583, 644, 705, 1601, 1937, 2016, 2484, 2518 |
| BfaI | CTAG | 9 cut(s) | 339, 629, 654, 803, 816, 1250, 1478, 2531, 2546 |
| BfmI | CTRYAG | 2 cut(s) | 831, 1828 |
| BfoI | RGCGCY | 3 cut(s) | 1406, 1987, 2343 |
| BfuAI | ACCTGC | 2 cut(s) | 572, 1003 |
| BfuI | GTATCC | 1 cut(s) | 892 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 243 |
| BglII | AGATCT | 1 cut(s) | 1090 |
| BlpI | GCTNAGC | 5 cut(s) | 525, 643, 704, 1292, 1834 |
| Bme1390I | CCNGG | 8 cut(s) | 441, 470, 569, 844, 1161, 1897, 2077, 2207 |
| Bme18I | GGWCC | 6 cut(s) | 8, 1201, 1618, 1673, 2361, 2589 |
| BmeT110I | CYCGRG | 2 cut(s) | 885, 2019 |
| BmgBI | CACGTC | 2 cut(s) | 1029, 2053 |
| BmgT120I | GGNCC | 8 cut(s) | 8, 446, 447, 1201, 1618, 1673, 2361, 2589 |
| BmrFI | CCNGG | 8 cut(s) | 441, 470, 569, 844, 1161, 1897, 2077, 2207 |
| BmrI | ACTGGG | 2 cut(s) | 298, 1571 |
| BmsI | GCATC | 5 cut(s) | 156, 1314, 1339, 1582, 2005 |
| BmtI | GCTAGC | 1 cut(s) | 632 |
| BmuI | ACTGGG | 2 cut(s) | 298, 1571 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1268 |
| BpiI | GAAGAC | 1 cut(s) | 1593 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 580, 612, 641, 673, 702, 734 |
| BpmI | CTGGAG | 6 cut(s) | 176, 1517, 1808, 1919, 2059, 2102 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1343, 1737, 1913, 2440 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 525, 643, 704, 1292, 1834 |
| Bpu14I | TTCGAA | 2 cut(s) | 347, 1188 |
| BpuMI | CCSGG | 2 cut(s) | 470, 1161 |
| BsaHI | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| BsaI | GGTCTC | 3 cut(s) | 68, 1937, 2518 |
| BsaWI | WCCGGW | 2 cut(s) | 1598, 1675 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 214, 244, 1220, 1250, 2057, 2087 |
| Bse118I | RCCGGY | 4 cut(s) | 494, 545, 1106, 1598 |
| Bse1I | ACTGG | 3 cut(s) | 304, 1577, 1624 |
| Bse21I | CCTNAGG | 1 cut(s) | 2427 |
| Bse3DI | GCAATG | 3 cut(s) | 556, 820, 1396 |
| BseBI | CCWGG | 6 cut(s) | 441, 569, 844, 1897, 2077, 2207 |
| BseGI | GGATG | 2 cut(s) | 2197, 2557 |
| BseMI | GCAATG | 3 cut(s) | 556, 820, 1396 |
| BseNI | ACTGG | 3 cut(s) | 304, 1577, 1624 |
| BseRI | GAGGAG | 2 cut(s) | 107, 708 |
| BseSI | GKGCMC | 3 cut(s) | 450, 789, 1848 |
| BseYI | CCCAGC | 5 cut(s) | 82, 147, 1110, 1771, 2364 |
| BsgI | GTGCAG | 2 cut(s) | 1388, 1703 |
| Bsh1236I | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1599 |
| BshFI | GGCC | 7 cut(s) | 448, 494, 979, 1383, 1658, 1955, 2312 |
| BshNI | GGYRCC | 6 cut(s) | 784, 1315, 1983, 2339, 2432, 2555 |
| BshTI | ACCGGT | 1 cut(s) | 1598 |
| BsiEI | CGRYCG | 1 cut(s) | 1599 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1431, 1516 |
| BsiHKCI | CYCGRG | 2 cut(s) | 885, 2019 |
| BsiSI | CCGG | 8 cut(s) | 220, 470, 495, 546, 1107, 1160, 1599, 1676 |
| BslFI | GGGAC | 7 cut(s) | 129, 141, 276, 285, 443, 2063, 2347 |
| BsmAI | GTCTC | 9 cut(s) | 68, 583, 644, 705, 1601, 1937, 2016, 2484, 2518 |
| BsmFI | GGGAC | 7 cut(s) | 129, 141, 276, 285, 443, 2063, 2347 |
| BsmI | GAATGC | 1 cut(s) | 1184 |
| BsnI | GGCC | 7 cut(s) | 448, 494, 979, 1383, 1658, 1955, 2312 |
| Bso31I | GGTCTC | 3 cut(s) | 68, 1937, 2518 |
| BsoBI | CYCGRG | 2 cut(s) | 885, 2019 |
| Bsp119I | TTCGAA | 2 cut(s) | 347, 1188 |
| Bsp120I | GGGCCC | 1 cut(s) | 446 |
| Bsp1286I | GDGCHC | 7 cut(s) | 450, 789, 1147, 1431, 1516, 1848, 2576 |
| Bsp143I | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 525, 643, 704, 1292, 1834 |
| Bsp19I | CCATGG | 3 cut(s) | 406, 1197, 1362 |
| Bsp68I | TCGCGA | 1 cut(s) | 557 |
| BspANI | GGCC | 7 cut(s) | 448, 494, 979, 1383, 1658, 1955, 2312 |
| BspFNI | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| BspMI | ACCTGC | 2 cut(s) | 572, 1003 |
| BspOI | GCTAGC | 1 cut(s) | 632 |
| BspPI | GGATC | 4 cut(s) | 1051, 1064, 2115, 2134 |
| BspT104I | TTCGAA | 2 cut(s) | 347, 1188 |
| BspT107I | GGYRCC | 6 cut(s) | 784, 1315, 1983, 2339, 2432, 2555 |
| BspTNI | GGTCTC | 3 cut(s) | 68, 1937, 2518 |
| BsrBI | CCGCTC | 6 cut(s) | 180, 1768, 1981, 2059, 2398, 2582 |
| BsrDI | GCAATG | 3 cut(s) | 556, 820, 1396 |
| BsrFI | RCCGGY | 4 cut(s) | 494, 545, 1106, 1598 |
| BsrI | ACTGG | 3 cut(s) | 304, 1577, 1624 |
| BssAI | RCCGGY | 4 cut(s) | 494, 545, 1106, 1598 |
| BssMI | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| BssNI | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| BssSI | CACGAG | 4 cut(s) | 1004, 1140, 1539, 2583 |
| BssT1I | CCWWGG | 5 cut(s) | 406, 1197, 1362, 1956, 1992 |
| Bst2BI | CACGAG | 4 cut(s) | 1004, 1140, 1539, 2583 |
| Bst2UI | CCWGG | 6 cut(s) | 441, 569, 844, 1897, 2077, 2207 |
| Bst4CI | ACNGT | 4 cut(s) | 203, 389, 988, 1267 |
| Bst6I | CTCTTC | 3 cut(s) | 1032, 1914, 2174 |
| BstACI | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| BstBI | TTCGAA | 2 cut(s) | 347, 1188 |
| BstDSI | CCRYGG | 5 cut(s) | 406, 987, 1060, 1197, 1362 |
| BstEII | GGTNACC | 2 cut(s) | 541, 756 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1991, 2102 |
| BstF5I | GGATG | 2 cut(s) | 2197, 2557 |
| BstFNI | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| BstH2I | RGCGCY | 3 cut(s) | 1406, 1987, 2343 |
| BstKTI | GATC | 8 cut(s) | 106, 1059, 1093, 1129, 1215, 1819, 2110, 2142 |
| BstMAI | GTCTC | 9 cut(s) | 68, 583, 644, 705, 1601, 1937, 2016, 2484, 2518 |
| BstMBI | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| BstMCI | CGRYCG | 1 cut(s) | 1599 |
| BstNI | CCWGG | 6 cut(s) | 441, 569, 844, 1897, 2077, 2207 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1268 |
| BstPI | GGTNACC | 2 cut(s) | 541, 756 |
| BstSCI | CCNGG | 8 cut(s) | 439, 468, 567, 842, 1159, 1895, 2075, 2205 |
| BstSFI | CTRYAG | 2 cut(s) | 831, 1828 |
| BstSLI | GKGCMC | 3 cut(s) | 450, 789, 1848 |
| BstUI | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| BstV2I | GAAGAC | 1 cut(s) | 1593 |
| BstX2I | RGATCY | 3 cut(s) | 1056, 1090, 2139 |
| BstYI | RGATCY | 3 cut(s) | 1056, 1090, 2139 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2427 |
| BsuI | GTATCC | 1 cut(s) | 892 |
| BsuRI | GGCC | 7 cut(s) | 448, 494, 979, 1383, 1658, 1955, 2312 |
| BtgI | CCRYGG | 5 cut(s) | 406, 987, 1060, 1197, 1362 |
| BtgZI | GCGATG | 1 cut(s) | 572 |
| BtrI | CACGTC | 2 cut(s) | 1029, 2053 |
| BtsCI | GGATG | 2 cut(s) | 2197, 2557 |
| BtsI | GCAGTG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 4 cut(s) | 94, 398, 1631, 1786 |
| BtuMI | TCGCGA | 1 cut(s) | 557 |
| BveI | ACCTGC | 2 cut(s) | 572, 1003 |
| CaiI | CAGNNNCTG | 1 cut(s) | 154 |
| Cfr10I | RCCGGY | 4 cut(s) | 494, 545, 1106, 1598 |
| Cfr13I | GGNCC | 8 cut(s) | 8, 446, 447, 1201, 1618, 1673, 2361, 2589 |
| Cfr42I | CCGCGG | 1 cut(s) | 1063 |
| CpoI | CGGWCCG | 1 cut(s) | 8 |
| CseI | GACGC | 7 cut(s) | 53, 184, 779, 934, 2220, 2407, 2453 |
| Csp6I | GTAC | 4 cut(s) | 285, 1237, 2389, 2556 |
| CspAI | ACCGGT | 1 cut(s) | 1598 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 969, 1004 |
| CspI | CGGWCCG | 1 cut(s) | 8 |
| CviAII | CATG | 9 cut(s) | 113, 407, 575, 856, 1198, 1205, 1363, 1442, 1865 |
| CviQI | GTAC | 4 cut(s) | 285, 1237, 2389, 2556 |
| DinI | GGCGCC | 2 cut(s) | 1985, 2341 |
| DpnI | GATC | 8 cut(s) | 105, 1058, 1092, 1128, 1214, 1818, 2109, 2141 |
| DpnII | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| DraIII | CACNNNGTG | 1 cut(s) | 2408 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1706, 2476 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1706, 2476 |
| EaeI | YGGCCR | 3 cut(s) | 492, 1381, 2310 |
| Eam1104I | CTCTTC | 3 cut(s) | 1032, 1914, 2174 |
| EarI | CTCTTC | 3 cut(s) | 1032, 1914, 2174 |
| EciI | GGCGGA | 5 cut(s) | 21, 350, 1610, 1964, 2279 |
| Ecl136II | GAGCTC | 1 cut(s) | 1514 |
| Eco130I | CCWWGG | 5 cut(s) | 406, 1197, 1362, 1956, 1992 |
| Eco24I | GRGCYC | 4 cut(s) | 450, 1147, 1516, 2576 |
| Eco31I | GGTCTC | 3 cut(s) | 68, 1937, 2518 |
| Eco47I | GGWCC | 6 cut(s) | 8, 1201, 1618, 1673, 2361, 2589 |
| Eco53kI | GAGCTC | 1 cut(s) | 1514 |
| Eco57I | CTGAAG | 4 cut(s) | 124, 2123, 2129, 2348 |
| Eco81I | CCTNAGG | 1 cut(s) | 2427 |
| Eco88I | CYCGRG | 2 cut(s) | 885, 2019 |
| Eco91I | GGTNACC | 2 cut(s) | 541, 756 |
| EcoICRI | GAGCTC | 1 cut(s) | 1514 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1991, 2102 |
| EcoO109I | RGGNCCY | 2 cut(s) | 447, 2361 |
| EcoO65I | GGTNACC | 2 cut(s) | 541, 756 |
| EcoRI | GAATTC | 1 cut(s) | 1721 |
| EcoRII | CCWGG | 6 cut(s) | 439, 567, 842, 1895, 2075, 2205 |
| EcoT14I | CCWWGG | 5 cut(s) | 406, 1197, 1362, 1956, 1992 |
| EcoT38I | GRGCYC | 4 cut(s) | 450, 1147, 1516, 2576 |
| EgeI | GGCGCC | 2 cut(s) | 1985, 2341 |
| EheI | GGCGCC | 2 cut(s) | 1985, 2341 |
| ErhI | CCWWGG | 5 cut(s) | 406, 1197, 1362, 1956, 1992 |
| FaeI | CATG | 9 cut(s) | 116, 410, 578, 859, 1201, 1208, 1366, 1445, 1868 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 341, 373 |
| FaqI | GGGAC | 7 cut(s) | 129, 141, 276, 285, 443, 2063, 2347 |
| FatI | CATG | 9 cut(s) | 112, 406, 574, 855, 1197, 1204, 1362, 1441, 1864 |
| FauI | CCCGC | 5 cut(s) | 835, 964, 1483, 1932, 2499 |
| FbaI | TGATCA | 1 cut(s) | 1816 |
| FblI | GTMKAC | 2 cut(s) | 1272, 1581 |
| FokI | GGATG | 2 cut(s) | 2204, 2564 |
| FriOI | GRGCYC | 4 cut(s) | 450, 1147, 1516, 2576 |
| FspBI | CTAG | 9 cut(s) | 339, 629, 654, 803, 816, 1250, 1478, 2531, 2546 |
| GsaI | CCCAGC | 5 cut(s) | 86, 151, 1114, 1775, 2368 |
| GsuI | CTGGAG | 6 cut(s) | 176, 1517, 1808, 1919, 2059, 2102 |
| HaeII | RGCGCY | 3 cut(s) | 1406, 1987, 2343 |
| HaeIII | GGCC | 7 cut(s) | 448, 494, 979, 1383, 1658, 1955, 2312 |
| HapII | CCGG | 8 cut(s) | 220, 470, 495, 546, 1107, 1160, 1599, 1676 |
| HgaI | GACGC | 7 cut(s) | 53, 184, 779, 934, 2220, 2407, 2453 |
| Hin1I | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| Hin1II | CATG | 9 cut(s) | 116, 410, 578, 859, 1201, 1208, 1366, 1445, 1868 |
| HincII | GTYRAC | 7 cut(s) | 199, 403, 736, 1000, 1137, 1273, 1582 |
| HindII | GTYRAC | 7 cut(s) | 199, 403, 736, 1000, 1137, 1273, 1582 |
| HinfI | GANTC | 8 cut(s) | 456, 810, 1151, 1700, 1794, 2153, 2221, 2477 |
| HpaII | CCGG | 8 cut(s) | 220, 470, 495, 546, 1107, 1160, 1599, 1676 |
| HphI | GGTGA | 4 cut(s) | 215, 553, 2137, 2188 |
| Hpy166II | GTNNAC | 9 cut(s) | 199, 403, 736, 1000, 1137, 1273, 1467, 1582, 2128 |
| Hpy188III | TCNNGA | 5 cut(s) | 155, 556, 875, 1006, 2021 |
| Hpy8I | GTNNAC | 9 cut(s) | 199, 403, 736, 1000, 1137, 1273, 1467, 1582, 2128 |
| Hpy99I | CGWCG | 6 cut(s) | 950, 1274, 1526, 1529, 1586, 2423 |
| HpyAV | CCTTC | 9 cut(s) | 446, 610, 771, 969, 1444, 1627, 1648, 2098, 2153 |
| HpyCH4III | ACNGT | 4 cut(s) | 203, 389, 988, 1267 |
| HpyCH4IV | ACGT | 3 cut(s) | 1028, 2052, 2316 |
| HpyCH4V | TGCA | 9 cut(s) | 269, 574, 665, 726, 1327, 1369, 1400, 1411, 1684 |
| HpySE526I | ACGT | 3 cut(s) | 1028, 2052, 2316 |
| Hsp92I | GRCGYC | 4 cut(s) | 64, 1984, 2231, 2340 |
| Hsp92II | CATG | 9 cut(s) | 116, 410, 578, 859, 1201, 1208, 1366, 1445, 1868 |
| KasI | GGCGCC | 2 cut(s) | 1983, 2339 |
| KflI | GGGWCCC | 1 cut(s) | 2361 |
| KpnI | GGTACC | 1 cut(s) | 2559 |
| Ksp22I | TGATCA | 1 cut(s) | 1816 |
| KspI | CCGCGG | 1 cut(s) | 1063 |
| Kzo9I | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| LweI | GCATC | 5 cut(s) | 156, 1314, 1339, 1582, 2005 |
| MaeI | CTAG | 9 cut(s) | 339, 629, 654, 803, 816, 1250, 1478, 2531, 2546 |
| MaeII | ACGT | 3 cut(s) | 1028, 2052, 2316 |
| MaeIII | GTNAC | 6 cut(s) | 541, 756, 1017, 1163, 1480, 1534 |
| MalI | GATC | 8 cut(s) | 105, 1058, 1092, 1128, 1214, 1818, 2109, 2141 |
| MbiI | CCGCTC | 6 cut(s) | 180, 1768, 1981, 2059, 2398, 2582 |
| MboI | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| MflI | RGATCY | 3 cut(s) | 1056, 1090, 2139 |
| MhlI | GDGCHC | 7 cut(s) | 450, 789, 1147, 1431, 1516, 1848, 2576 |
| MlsI | TGGCCA | 1 cut(s) | 2312 |
| MluCI | AATT | 3 cut(s) | 258, 382, 1721 |
| MluNI | TGGCCA | 1 cut(s) | 2312 |
| Mly113I | GGCGCC | 2 cut(s) | 1984, 2340 |
| MlyI | GAGTC | 3 cut(s) | 465, 1694, 2486 |
| MmeI | TCCRAC | 2 cut(s) | 1710, 2492 |
| Mox20I | TGGCCA | 1 cut(s) | 2312 |
| MscI | TGGCCA | 1 cut(s) | 2312 |
| MseI | TTAA | 4 cut(s) | 1805, 2136, 2355, 2381 |
| Msp20I | TGGCCA | 1 cut(s) | 2312 |
| MspA1I | CMGCKG | 4 cut(s) | 962, 1062, 1670, 1939 |
| MspI | CCGG | 8 cut(s) | 220, 470, 495, 546, 1107, 1160, 1599, 1676 |
| MspR9I | CCNGG | 8 cut(s) | 441, 470, 569, 844, 1161, 1897, 2077, 2207 |
| Mva1269I | GAATGC | 1 cut(s) | 1184 |
| MvaI | CCWGG | 6 cut(s) | 441, 569, 844, 1897, 2077, 2207 |
| MvnI | CGCG | 8 cut(s) | 80, 185, 195, 557, 586, 1062, 1179, 2418 |
| NarI | GGCGCC | 2 cut(s) | 1984, 2340 |
| NciI | CCSGG | 2 cut(s) | 470, 1161 |
| NcoI | CCATGG | 3 cut(s) | 406, 1197, 1362 |
| NdeII | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| NheI | GCTAGC | 1 cut(s) | 628 |
| NlaIII | CATG | 9 cut(s) | 116, 410, 578, 859, 1201, 1208, 1366, 1445, 1868 |
| NmeAIII | GCCGAG | 2 cut(s) | 1234, 2595 |
| NmuCI | GTSAC | 3 cut(s) | 541, 1480, 1534 |
| NruI | TCGCGA | 1 cut(s) | 557 |
| NspV | TTCGAA | 2 cut(s) | 347, 1188 |
| PaeR7I | CTCGAG | 1 cut(s) | 2019 |
| PaqCI | CACCTGC | 1 cut(s) | 1003 |
| PasI | CCCWGGG | 1 cut(s) | 1896 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 868, 916, 1002, 1587, 1716 |
| PctI | GAATGC | 1 cut(s) | 1184 |
| PfeI | GAWTC | 5 cut(s) | 810, 1151, 1794, 2153, 2221 |
| PflFI | GACNNNGTC | 1 cut(s) | 1577 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 154, 2349 |
| PinAI | ACCGGT | 1 cut(s) | 1598 |
| PleI | GAGTC | 3 cut(s) | 464, 1694, 2485 |
| PluTI | GGCGCC | 2 cut(s) | 1987, 2343 |
| PpsI | GAGTC | 3 cut(s) | 464, 1694, 2485 |
| PpuMI | RGGWCCY | 1 cut(s) | 2361 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1268 |
| Psp124BI | GAGCTC | 1 cut(s) | 1516 |
| Psp5II | RGGWCCY | 1 cut(s) | 2361 |
| Psp6I | CCWGG | 6 cut(s) | 439, 567, 842, 1895, 2075, 2205 |
| PspEI | GGTNACC | 2 cut(s) | 541, 756 |
| PspFI | CCCAGC | 5 cut(s) | 82, 147, 1110, 1771, 2364 |
| PspGI | CCWGG | 6 cut(s) | 439, 567, 842, 1895, 2075, 2205 |
| PspOMI | GGGCCC | 1 cut(s) | 446 |
| PspPI | GGNCC | 8 cut(s) | 8, 446, 447, 1201, 1618, 1673, 2361, 2589 |
| PspPPI | RGGWCCY | 1 cut(s) | 2361 |
| PstNI | CAGNNNCTG | 1 cut(s) | 154 |
| PsuI | RGATCY | 3 cut(s) | 1056, 1090, 2139 |
| PsyI | GACNNNGTC | 1 cut(s) | 1577 |
| RruI | TCGCGA | 1 cut(s) | 557 |
| RsaI | GTAC | 4 cut(s) | 286, 1238, 2390, 2557 |
| RsaNI | GTAC | 4 cut(s) | 285, 1237, 2389, 2556 |
| Rsr2I | CGGWCCG | 1 cut(s) | 8 |
| RsrII | CGGWCCG | 1 cut(s) | 8 |
| SacI | GAGCTC | 1 cut(s) | 1516 |
| SacII | CCGCGG | 1 cut(s) | 1063 |
| SalI | GTCGAC | 2 cut(s) | 1271, 1580 |
| SaqAI | TTAA | 4 cut(s) | 1805, 2136, 2355, 2381 |
| Sau3AI | GATC | 8 cut(s) | 103, 1056, 1090, 1126, 1212, 1816, 2107, 2139 |
| Sau96I | GGNCC | 8 cut(s) | 8, 446, 447, 1201, 1618, 1673, 2361, 2589 |
| SchI | GAGTC | 3 cut(s) | 465, 1694, 2486 |
| ScrFI | CCNGG | 8 cut(s) | 441, 470, 569, 844, 1161, 1897, 2077, 2207 |
| SduI | GDGCHC | 7 cut(s) | 450, 789, 1147, 1431, 1516, 1848, 2576 |
| SfaNI | GCATC | 5 cut(s) | 156, 1314, 1339, 1582, 2005 |
| SfcI | CTRYAG | 2 cut(s) | 831, 1828 |
| SfoI | GGCGCC | 2 cut(s) | 1985, 2341 |
| Sfr274I | CTCGAG | 1 cut(s) | 2019 |
| Sfr303I | CCGCGG | 1 cut(s) | 1063 |
| SfuI | TTCGAA | 2 cut(s) | 347, 1188 |
| SgrBI | CCGCGG | 1 cut(s) | 1063 |
| SinI | GGWCC | 6 cut(s) | 8, 1201, 1618, 1673, 2361, 2589 |
| SlaI | CTCGAG | 1 cut(s) | 2019 |
| SmlI | CTYRAG | 1 cut(s) | 2019 |
| SmoI | CTYRAG | 1 cut(s) | 2019 |
| Sse9I | AATT | 3 cut(s) | 258, 382, 1721 |
| SspDI | GGCGCC | 2 cut(s) | 1983, 2339 |
| SspMI | CTAG | 9 cut(s) | 339, 629, 654, 803, 816, 1250, 1478, 2531, 2546 |
| SstI | GAGCTC | 1 cut(s) | 1516 |
| StyD4I | CCNGG | 8 cut(s) | 439, 468, 567, 842, 1159, 1895, 2075, 2205 |
| StyI | CCWWGG | 5 cut(s) | 406, 1197, 1362, 1956, 1992 |
| TaaI | ACNGT | 4 cut(s) | 203, 389, 988, 1267 |
| TaiI | ACGT | 3 cut(s) | 1031, 2055, 2319 |
| TasI | AATT | 3 cut(s) | 258, 382, 1721 |
| TatI | WGTACW | 1 cut(s) | 284 |
| TfiI | GAWTC | 5 cut(s) | 810, 1151, 1794, 2153, 2221 |
| Tru1I | TTAA | 4 cut(s) | 1805, 2136, 2355, 2381 |
| Tru9I | TTAA | 4 cut(s) | 1805, 2136, 2355, 2381 |
| TscAI | CASTG | 4 cut(s) | 94, 398, 1631, 1786 |
| TseFI | GTSAC | 3 cut(s) | 541, 1480, 1534 |
| Tsp45I | GTSAC | 3 cut(s) | 541, 1480, 1534 |
| TspDTI | ATGAA | 3 cut(s) | 65, 809, 844 |
| TspGWI | ACGGA | 2 cut(s) | 476, 1843 |
| TspRI | CASTG | 4 cut(s) | 94, 398, 1631, 1786 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1577 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 154, 2349 |
| VpaK11BI | GGWCC | 6 cut(s) | 8, 1201, 1618, 1673, 2361, 2589 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1991, 2102 |
| XapI | RAATTY | 1 cut(s) | 1721 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1963 |
| XhoI | CTCGAG | 1 cut(s) | 2019 |
| XmiI | GTMKAC | 2 cut(s) | 1272, 1581 |
| XspI | CTAG | 9 cut(s) | 339, 629, 654, 803, 816, 1250, 1478, 2531, 2546 |