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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2176 |
| Acc36I | ACCTGC | 2 cut(s) | 1258, 1910 |
| AccB1I | GGYRCC | 5 cut(s) | 164, 352, 1378, 2039, 2132 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 370, 417 |
| AccBSI | CCGCTC | 6 cut(s) | 1123, 1441, 1681, 1747, 1810, 2139 |
| AccI | GTMKAC | 2 cut(s) | 174, 735 |
| AclWI | GGATC | 1 cut(s) | 780 |
| AcoI | YGGCCR | 5 cut(s) | 306, 1077, 1689, 1737, 2082 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcuI | CTGAAG | 3 cut(s) | 476, 1513, 2048 |
| AcyI | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| AfaI | GTAC | 3 cut(s) | 929, 1924, 2092 |
| AfeI | AGCGCT | 1 cut(s) | 1099 |
| AflIII | ACRYGT | 2 cut(s) | 414, 1768 |
| AgeI | ACCGGT | 2 cut(s) | 633, 822 |
| AgsI | TTSAA | 3 cut(s) | 881, 1946, 1954 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 510, 683 |
| AjiI | CACGTC | 1 cut(s) | 1303 |
| AjnI | CCWGG | 5 cut(s) | 156, 369, 565, 1232, 1596 |
| Alw21I | GWGCWC | 3 cut(s) | 29, 1505, 1614 |
| Alw26I | GTCTC | 5 cut(s) | 914, 965, 1172, 1637, 1777 |
| AlwI | GGATC | 1 cut(s) | 780 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 50, 1597 |
| Ama87I | CYCGRG | 2 cut(s) | 968, 1498 |
| Aor51HI | AGCGCT | 1 cut(s) | 1099 |
| ApaI | GGGCCC | 2 cut(s) | 1321, 2008 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AsiGI | ACCGGT | 2 cut(s) | 633, 822 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AsuC2I | CCSGG | 2 cut(s) | 240, 460 |
| AvaI | CYCGRG | 2 cut(s) | 968, 1498 |
| AvaII | GGWCC | 5 cut(s) | 11, 527, 700, 892, 2178 |
| AxyI | CCTNAGG | 1 cut(s) | 1907 |
| BaeGI | GKGCMC | 3 cut(s) | 1321, 2008, 2137 |
| BalI | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| BanI | GGYRCC | 5 cut(s) | 164, 352, 1378, 2039, 2132 |
| BanII | GRGCYC | 6 cut(s) | 29, 245, 1321, 1505, 1614, 2008 |
| BauI | CACGAG | 1 cut(s) | 1574 |
| BbsI | GAAGAC | 1 cut(s) | 959 |
| Bbv12I | GWGCWC | 3 cut(s) | 29, 1505, 1614 |
| BccI | CCATC | 8 cut(s) | 155, 625, 1037, 1038, 1360, 1427, 1464, 2051 |
| BceAI | ACGGC | 7 cut(s) | 282, 293, 1189, 1370, 1484, 1524, 1922 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 154, 188 |
| BciT130I | CCWGG | 5 cut(s) | 158, 371, 567, 1234, 1598 |
| BcnI | CCSGG | 2 cut(s) | 240, 460 |
| BcoDI | GTCTC | 5 cut(s) | 914, 965, 1172, 1637, 1777 |
| BfaI | CTAG | 6 cut(s) | 30, 60, 293, 1472, 1487, 2009 |
| BfmI | CTRYAG | 3 cut(s) | 1101, 1802, 2204 |
| BfoI | RGCGCY | 6 cut(s) | 654, 983, 1101, 1250, 1382, 2043 |
| BfuAI | ACCTGC | 2 cut(s) | 1258, 1910 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 720, 1076 |
| BlpI | GCTNAGC | 1 cut(s) | 983 |
| BmcAI | AGTACT | 1 cut(s) | 1924 |
| Bme1390I | CCNGG | 7 cut(s) | 158, 240, 371, 460, 567, 1234, 1598 |
| Bme18I | GGWCC | 5 cut(s) | 11, 527, 700, 892, 2178 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 510, 683 |
| BmeT110I | CYCGRG | 2 cut(s) | 968, 1498 |
| BmgBI | CACGTC | 1 cut(s) | 1303 |
| BmrFI | CCNGG | 7 cut(s) | 158, 240, 371, 460, 567, 1234, 1598 |
| BmsI | GCATC | 2 cut(s) | 1116, 2062 |
| BpiI | GAAGAC | 1 cut(s) | 959 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1385, 1417 |
| BpmI | CTGGAG | 5 cut(s) | 140, 938, 1271, 1619, 1907 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1613, 2140 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 983 |
| BpuMI | CCSGG | 2 cut(s) | 240, 460 |
| BsaHI | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| BsaI | GGTCTC | 2 cut(s) | 914, 1637 |
| BsaWI | WCCGGW | 4 cut(s) | 231, 633, 822, 1000 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 911, 941, 1190, 1220 |
| Bse118I | RCCGGY | 5 cut(s) | 633, 822, 1051, 1171, 2080 |
| Bse1I | ACTGG | 6 cut(s) | 523, 696, 841, 981, 988, 1671 |
| Bse21I | CCTNAGG | 1 cut(s) | 1907 |
| Bse3DI | GCAATG | 2 cut(s) | 441, 894 |
| BseBI | CCWGG | 5 cut(s) | 158, 371, 567, 1234, 1598 |
| BseGI | GGATG | 4 cut(s) | 166, 277, 1131, 1438 |
| BseMI | GCAATG | 2 cut(s) | 441, 894 |
| BseMII | CTCAG | 7 cut(s) | 129, 612, 974, 1627, 1863, 1898, 2154 |
| BseNI | ACTGG | 6 cut(s) | 523, 696, 841, 981, 988, 1671 |
| BseRI | GAGGAG | 2 cut(s) | 768, 1214 |
| BseSI | GKGCMC | 3 cut(s) | 1321, 2008, 2137 |
| BseX3I | CGGCCG | 1 cut(s) | 306 |
| BseYI | CCCAGC | 5 cut(s) | 107, 1106, 2000, 2122, 2181 |
| BsgI | GTGCAG | 4 cut(s) | 1079, 1187, 1547, 1865 |
| Bsh1285I | CGRYCG | 2 cut(s) | 309, 1935 |
| BshNI | GGYRCC | 5 cut(s) | 164, 352, 1378, 2039, 2132 |
| BshTI | ACCGGT | 2 cut(s) | 633, 822 |
| BsiEI | CGRYCG | 2 cut(s) | 309, 1935 |
| BsiHKAI | GWGCWC | 3 cut(s) | 29, 1505, 1614 |
| BsiHKCI | CYCGRG | 2 cut(s) | 968, 1498 |
| BslFI | GGGAC | 8 cut(s) | 540, 690, 713, 739, 1572, 1763, 2099, 2164 |
| BsmAI | GTCTC | 5 cut(s) | 914, 965, 1172, 1637, 1777 |
| BsmBI | CGTCTC | 1 cut(s) | 1777 |
| BsmFI | GGGAC | 8 cut(s) | 540, 690, 713, 739, 1572, 1763, 2099, 2164 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| Bso31I | GGTCTC | 2 cut(s) | 914, 1637 |
| BsoBI | CYCGRG | 2 cut(s) | 968, 1498 |
| Bsp120I | GGGCCC | 2 cut(s) | 1317, 2004 |
| Bsp1286I | GDGCHC | 7 cut(s) | 29, 245, 1321, 1505, 1614, 2008, 2137 |
| Bsp143I | GATC | 3 cut(s) | 661, 772, 1311 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 983 |
| Bsp68I | TCGCGA | 1 cut(s) | 870 |
| BspCNI | CTCAG | 7 cut(s) | 130, 613, 975, 1626, 1864, 1899, 2153 |
| BspHI | TCATGA | 1 cut(s) | 1425 |
| BspMAI | CTGCAG | 1 cut(s) | 1806 |
| BspMI | ACCTGC | 2 cut(s) | 1258, 1910 |
| BspPI | GGATC | 1 cut(s) | 780 |
| BspT107I | GGYRCC | 5 cut(s) | 164, 352, 1378, 2039, 2132 |
| BspTNI | GGTCTC | 2 cut(s) | 914, 1637 |
| BsrBI | CCGCTC | 6 cut(s) | 1123, 1441, 1681, 1747, 1810, 2139 |
| BsrDI | GCAATG | 2 cut(s) | 441, 894 |
| BsrFI | RCCGGY | 5 cut(s) | 633, 822, 1051, 1171, 2080 |
| BsrI | ACTGG | 6 cut(s) | 523, 696, 841, 981, 988, 1671 |
| BssAI | RCCGGY | 5 cut(s) | 633, 822, 1051, 1171, 2080 |
| BssMI | GATC | 3 cut(s) | 661, 772, 1311 |
| BssNAI | GTATAC | 1 cut(s) | 736 |
| BssNI | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| BssSI | CACGAG | 1 cut(s) | 1574 |
| BssT1I | CCWWGG | 4 cut(s) | 1193, 1627, 1692, 1821 |
| Bst1107I | GTATAC | 1 cut(s) | 736 |
| Bst2BI | CACGAG | 1 cut(s) | 1574 |
| Bst2UI | CCWGG | 5 cut(s) | 158, 371, 567, 1234, 1598 |
| Bst4CI | ACNGT | 5 cut(s) | 147, 172, 447, 1183, 1360 |
| Bst6I | CTCTTC | 3 cut(s) | 745, 1284, 1457 |
| BstACI | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 50, 1570, 2132 |
| BstDEI | CTNAG | 8 cut(s) | 138, 621, 672, 983, 1613, 1872, 1907, 2140 |
| BstDSI | CCRYGG | 4 cut(s) | 146, 1506, 1720, 1929 |
| BstEII | GGTNACC | 2 cut(s) | 629, 1897 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1601, 1802, 1906 |
| BstF5I | GGATG | 4 cut(s) | 166, 277, 1131, 1438 |
| BstH2I | RGCGCY | 6 cut(s) | 654, 983, 1101, 1250, 1382, 2043 |
| BstKTI | GATC | 3 cut(s) | 664, 775, 1314 |
| BstMAI | GTCTC | 5 cut(s) | 914, 965, 1172, 1637, 1777 |
| BstMBI | GATC | 3 cut(s) | 661, 772, 1311 |
| BstMCI | CGRYCG | 2 cut(s) | 309, 1935 |
| BstNI | CCWGG | 5 cut(s) | 158, 371, 567, 1234, 1598 |
| BstNSI | RCATGY | 3 cut(s) | 418, 1573, 2026 |
| BstPI | GGTNACC | 2 cut(s) | 629, 1897 |
| BstSCI | CCNGG | 7 cut(s) | 156, 238, 369, 458, 565, 1232, 1596 |
| BstSFI | CTRYAG | 3 cut(s) | 1101, 1802, 2204 |
| BstSLI | GKGCMC | 3 cut(s) | 1321, 2008, 2137 |
| BstV2I | GAAGAC | 1 cut(s) | 959 |
| BstZ17I | GTATAC | 1 cut(s) | 736 |
| BstZI | CGGCCG | 1 cut(s) | 306 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1907 |
| BtgI | CCRYGG | 4 cut(s) | 146, 1506, 1720, 1929 |
| BtgZI | GCGATG | 2 cut(s) | 1777, 1994 |
| BtrI | CACGTC | 1 cut(s) | 1303 |
| BtsCI | GGATG | 4 cut(s) | 166, 277, 1131, 1438 |
| BtsI | GCAGTG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 3 cut(s) | 129, 443, 974 |
| BtuMI | TCGCGA | 1 cut(s) | 870 |
| BveI | ACCTGC | 2 cut(s) | 1258, 1910 |
| CaiI | CAGNNNCTG | 2 cut(s) | 50, 1597 |
| CciI | TCATGA | 1 cut(s) | 1425 |
| Cfr10I | RCCGGY | 5 cut(s) | 633, 822, 1051, 1171, 2080 |
| Cfr42I | CCGCGG | 2 cut(s) | 1723, 1932 |
| Csp6I | GTAC | 3 cut(s) | 928, 1923, 2091 |
| CspAI | ACCGGT | 2 cut(s) | 633, 822 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1123, 1158, 1495, 1530 |
| CviAII | CATG | 6 cut(s) | 314, 415, 925, 1426, 1570, 2023 |
| CviQI | GTAC | 3 cut(s) | 928, 1923, 2091 |
| DdeI | CTNAG | 8 cut(s) | 138, 621, 672, 983, 1613, 1872, 1907, 2140 |
| DinI | GGCGCC | 2 cut(s) | 1380, 2041 |
| DpnI | GATC | 3 cut(s) | 663, 774, 1313 |
| DpnII | GATC | 3 cut(s) | 661, 772, 1311 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2176 |
| DriI | GACNNNNNGTC | 2 cut(s) | 510, 683 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2176 |
| EaeI | YGGCCR | 5 cut(s) | 306, 1077, 1689, 1737, 2082 |
| EagI | CGGCCG | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 3 cut(s) | 745, 1284, 1457 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 510, 683 |
| EarI | CTCTTC | 3 cut(s) | 745, 1284, 1457 |
| Ecl136II | GAGCTC | 3 cut(s) | 27, 1503, 1612 |
| EclXI | CGGCCG | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 4 cut(s) | 1193, 1627, 1692, 1821 |
| Eco24I | GRGCYC | 6 cut(s) | 29, 245, 1321, 1505, 1614, 2008 |
| Eco31I | GGTCTC | 2 cut(s) | 914, 1637 |
| Eco47I | GGWCC | 5 cut(s) | 11, 527, 700, 892, 2178 |
| Eco47III | AGCGCT | 1 cut(s) | 1099 |
| Eco52I | CGGCCG | 1 cut(s) | 306 |
| Eco53kI | GAGCTC | 3 cut(s) | 27, 1503, 1612 |
| Eco57I | CTGAAG | 3 cut(s) | 476, 1513, 2048 |
| Eco81I | CCTNAGG | 1 cut(s) | 1907 |
| Eco88I | CYCGRG | 2 cut(s) | 968, 1498 |
| Eco91I | GGTNACC | 2 cut(s) | 629, 1897 |
| EcoICRI | GAGCTC | 3 cut(s) | 27, 1503, 1612 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1601, 1802, 1906 |
| EcoO109I | RGGNCCY | 7 cut(s) | 470, 527, 700, 1317, 2004, 2005, 2178 |
| EcoO65I | GGTNACC | 2 cut(s) | 629, 1897 |
| EcoRII | CCWGG | 5 cut(s) | 156, 369, 565, 1232, 1596 |
| EcoT14I | CCWWGG | 4 cut(s) | 1193, 1627, 1692, 1821 |
| EcoT38I | GRGCYC | 6 cut(s) | 29, 245, 1321, 1505, 1614, 2008 |
| EgeI | GGCGCC | 2 cut(s) | 1380, 2041 |
| EheI | GGCGCC | 2 cut(s) | 1380, 2041 |
| ErhI | CCWWGG | 4 cut(s) | 1193, 1627, 1692, 1821 |
| Esp3I | CGTCTC | 1 cut(s) | 1777 |
| FaeI | CATG | 6 cut(s) | 317, 418, 928, 1429, 1573, 2026 |
| FaqI | GGGAC | 8 cut(s) | 540, 690, 713, 739, 1572, 1763, 2099, 2164 |
| FatI | CATG | 6 cut(s) | 313, 414, 924, 1425, 1569, 2022 |
| FblI | GTMKAC | 2 cut(s) | 174, 735 |
| FokI | GGATG | 4 cut(s) | 173, 284, 1138, 1445 |
| FriOI | GRGCYC | 6 cut(s) | 29, 245, 1321, 1505, 1614, 2008 |
| FspBI | CTAG | 6 cut(s) | 30, 60, 293, 1472, 1487, 2009 |
| GsaI | CCCAGC | 5 cut(s) | 111, 1110, 2004, 2126, 2185 |
| GsuI | CTGGAG | 5 cut(s) | 140, 938, 1271, 1619, 1907 |
| HaeII | RGCGCY | 6 cut(s) | 654, 983, 1101, 1250, 1382, 2043 |
| Hin1I | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| Hin1II | CATG | 6 cut(s) | 317, 418, 928, 1429, 1573, 2026 |
| HincII | GTYRAC | 2 cut(s) | 175, 1273 |
| HindII | GTYRAC | 2 cut(s) | 175, 1273 |
| Hpy166II | GTNNAC | 5 cut(s) | 175, 504, 736, 964, 1273 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 665, 869, 917, 1280, 1426, 1498, 1636 |
| Hpy8I | GTNNAC | 5 cut(s) | 175, 504, 736, 964, 1273 |
| HpyCH4III | ACNGT | 5 cut(s) | 147, 172, 447, 1183, 1360 |
| HpyCH4IV | ACGT | 4 cut(s) | 227, 1261, 1302, 1734 |
| HpyCH4V | TGCA | 6 cut(s) | 313, 1060, 1168, 1564, 1804, 1846 |
| HpyF3I | CTNAG | 8 cut(s) | 138, 621, 672, 983, 1613, 1872, 1907, 2140 |
| HpySE526I | ACGT | 4 cut(s) | 227, 1261, 1302, 1734 |
| Hsp92I | GRCGYC | 5 cut(s) | 281, 1379, 1583, 1716, 2040 |
| Hsp92II | CATG | 6 cut(s) | 317, 418, 928, 1429, 1573, 2026 |
| KasI | GGCGCC | 2 cut(s) | 1378, 2039 |
| KflI | GGGWCCC | 1 cut(s) | 2178 |
| KroI | GCCGGC | 2 cut(s) | 1171, 2080 |
| KroNI | GCCGGC | 2 cut(s) | 1173, 2082 |
| KspI | CCGCGG | 2 cut(s) | 1723, 1932 |
| Kzo9I | GATC | 3 cut(s) | 661, 772, 1311 |
| LweI | GCATC | 2 cut(s) | 1116, 2062 |
| MaeI | CTAG | 6 cut(s) | 30, 60, 293, 1472, 1487, 2009 |
| MaeII | ACGT | 4 cut(s) | 227, 1261, 1302, 1734 |
| MaeIII | GTNAC | 9 cut(s) | 141, 208, 337, 629, 832, 1216, 1703, 1897, 2061 |
| MalI | GATC | 3 cut(s) | 663, 774, 1313 |
| MbiI | CCGCTC | 6 cut(s) | 1123, 1441, 1681, 1747, 1810, 2139 |
| MboI | GATC | 3 cut(s) | 661, 772, 1311 |
| MboII | GAAGA | 8 cut(s) | 125, 128, 762, 964, 1052, 1301, 1342, 1444 |
| MfeI | CAATTG | 1 cut(s) | 1512 |
| MhlI | GDGCHC | 7 cut(s) | 29, 245, 1321, 1505, 1614, 2008, 2137 |
| MlsI | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| MluCI | AATT | 3 cut(s) | 380, 797, 1512 |
| MluI | ACGCGT | 1 cut(s) | 1768 |
| MluNI | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| Mly113I | GGCGCC | 2 cut(s) | 1379, 2040 |
| MlyI | GAGTC | 7 cut(s) | 149, 499, 672, 1268, 1394, 1862, 2182 |
| MmeI | TCCRAC | 4 cut(s) | 584, 636, 836, 1761 |
| Mox20I | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| MroNI | GCCGGC | 2 cut(s) | 1171, 2080 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MscI | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| MseI | TTAA | 3 cut(s) | 593, 599, 1971 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 1035, 1574, 1841, 2021 |
| Msp20I | TGGCCA | 3 cut(s) | 1079, 1691, 1739 |
| MspR9I | CCNGG | 7 cut(s) | 158, 240, 371, 460, 567, 1234, 1598 |
| MunI | CAATTG | 1 cut(s) | 1512 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| MvaI | CCWGG | 5 cut(s) | 158, 371, 567, 1234, 1598 |
| NaeI | GCCGGC | 2 cut(s) | 1173, 2082 |
| NarI | GGCGCC | 2 cut(s) | 1379, 2040 |
| NciI | CCSGG | 2 cut(s) | 240, 460 |
| NdeII | GATC | 3 cut(s) | 661, 772, 1311 |
| NgoMIV | GCCGGC | 2 cut(s) | 1171, 2080 |
| NlaIII | CATG | 6 cut(s) | 317, 418, 928, 1429, 1573, 2026 |
| NmeAIII | GCCGAG | 2 cut(s) | 1435, 1514 |
| NmuCI | GTSAC | 6 cut(s) | 141, 208, 337, 1216, 1703, 2061 |
| NruI | TCGCGA | 1 cut(s) | 870 |
| NspI | RCATGY | 3 cut(s) | 418, 1573, 2026 |
| PaeR7I | CTCGAG | 1 cut(s) | 1498 |
| PagI | TCATGA | 1 cut(s) | 1425 |
| PciI | ACATGT | 1 cut(s) | 414 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 13, 1572 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PdiI | GCCGGC | 2 cut(s) | 1173, 2082 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 3 cut(s) | 286, 668, 791 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 370, 417 |
| PfoI | TCCNGGA | 1 cut(s) | 156 |
| PinAI | ACCGGT | 2 cut(s) | 633, 822 |
| PleI | GAGTC | 7 cut(s) | 148, 499, 672, 1268, 1394, 1861, 2182 |
| PluTI | GGCGCC | 2 cut(s) | 1382, 2043 |
| PpsI | GAGTC | 7 cut(s) | 148, 499, 672, 1268, 1394, 1861, 2182 |
| PpuMI | RGGWCCY | 3 cut(s) | 527, 700, 2178 |
| PscI | ACATGT | 1 cut(s) | 414 |
| Psp124BI | GAGCTC | 3 cut(s) | 29, 1505, 1614 |
| Psp5II | RGGWCCY | 3 cut(s) | 527, 700, 2178 |
| Psp6I | CCWGG | 5 cut(s) | 156, 369, 565, 1232, 1596 |
| PspEI | GGTNACC | 2 cut(s) | 629, 1897 |
| PspFI | CCCAGC | 5 cut(s) | 107, 1106, 2000, 2122, 2181 |
| PspGI | CCWGG | 5 cut(s) | 156, 369, 565, 1232, 1596 |
| PspOMI | GGGCCC | 2 cut(s) | 1317, 2004 |
| PspPPI | RGGWCCY | 3 cut(s) | 527, 700, 2178 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1406, 1438 |
| PstI | CTGCAG | 1 cut(s) | 1806 |
| PstNI | CAGNNNCTG | 2 cut(s) | 50, 1597 |
| PvuII | CAGCTG | 3 cut(s) | 47, 206, 1106 |
| RruI | TCGCGA | 1 cut(s) | 870 |
| RsaI | GTAC | 3 cut(s) | 929, 1924, 2092 |
| RsaNI | GTAC | 3 cut(s) | 928, 1923, 2091 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 1035, 1574, 1841, 2021 |
| SacI | GAGCTC | 3 cut(s) | 29, 1505, 1614 |
| SacII | CCGCGG | 2 cut(s) | 1723, 1932 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SaqAI | TTAA | 3 cut(s) | 593, 599, 1971 |
| Sau3AI | GATC | 3 cut(s) | 661, 772, 1311 |
| ScaI | AGTACT | 1 cut(s) | 1924 |
| SchI | GAGTC | 7 cut(s) | 149, 499, 672, 1268, 1394, 1862, 2182 |
| ScrFI | CCNGG | 7 cut(s) | 158, 240, 371, 460, 567, 1234, 1598 |
| SduI | GDGCHC | 7 cut(s) | 29, 245, 1321, 1505, 1614, 2008, 2137 |
| SfaNI | GCATC | 2 cut(s) | 1116, 2062 |
| SfcI | CTRYAG | 3 cut(s) | 1101, 1802, 2204 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1076 |
| SfoI | GGCGCC | 2 cut(s) | 1380, 2041 |
| Sfr274I | CTCGAG | 1 cut(s) | 1498 |
| Sfr303I | CCGCGG | 2 cut(s) | 1723, 1932 |
| SgrBI | CCGCGG | 2 cut(s) | 1723, 1932 |
| SgrDI | CGTCGACG | 1 cut(s) | 173 |
| SinI | GGWCC | 5 cut(s) | 11, 527, 700, 892, 2178 |
| SlaI | CTCGAG | 1 cut(s) | 1498 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 1035, 1574, 1841, 2021 |
| SmlI | CTYRAG | 1 cut(s) | 1498 |
| SmoI | CTYRAG | 1 cut(s) | 1498 |
| Sse9I | AATT | 3 cut(s) | 380, 797, 1512 |
| SspDI | GGCGCC | 2 cut(s) | 1378, 2039 |
| SspMI | CTAG | 6 cut(s) | 30, 60, 293, 1472, 1487, 2009 |
| SstI | GAGCTC | 3 cut(s) | 29, 1505, 1614 |
| StyD4I | CCNGG | 7 cut(s) | 156, 238, 369, 458, 565, 1232, 1596 |
| StyI | CCWWGG | 4 cut(s) | 1193, 1627, 1692, 1821 |
| TaaI | ACNGT | 5 cut(s) | 147, 172, 447, 1183, 1360 |
| TaiI | ACGT | 4 cut(s) | 230, 1264, 1305, 1737 |
| TaqII | GACCGA | 2 cut(s) | 386, 2000 |
| TasI | AATT | 3 cut(s) | 380, 797, 1512 |
| TatI | WGTACW | 2 cut(s) | 927, 1922 |
| TfiI | GAWTC | 3 cut(s) | 286, 668, 791 |
| Tru1I | TTAA | 3 cut(s) | 593, 599, 1971 |
| Tru9I | TTAA | 3 cut(s) | 593, 599, 1971 |
| TscAI | CASTG | 3 cut(s) | 129, 450, 981 |
| TseFI | GTSAC | 6 cut(s) | 141, 208, 337, 1216, 1703, 2061 |
| Tsp45I | GTSAC | 6 cut(s) | 141, 208, 337, 1216, 1703, 2061 |
| TspDTI | ATGAA | 5 cut(s) | 209, 233, 452, 1414, 1779 |
| TspGWI | ACGGA | 4 cut(s) | 851, 1338, 1445, 2186 |
| TspRI | CASTG | 3 cut(s) | 129, 450, 981 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 370, 417 |
| VpaK11BI | GGWCC | 5 cut(s) | 11, 527, 700, 892, 2178 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1601, 1802, 1906 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XceI | RCATGY | 3 cut(s) | 418, 1573, 2026 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1031 |
| XhoI | CTCGAG | 1 cut(s) | 1498 |
| XmiI | GTMKAC | 2 cut(s) | 174, 735 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 6 cut(s) | 30, 60, 293, 1472, 1487, 2009 |
| ZrmI | AGTACT | 1 cut(s) | 1924 |