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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1183 |
| Acc36I | ACCTGC | 1 cut(s) | 1183 |
| AccB1I | GGYRCC | 5 cut(s) | 86, 147, 208, 269, 1171 |
| AccBSI | CCGCTC | 5 cut(s) | 916, 1234, 1474, 1540, 1603 |
| AccI | GTMKAC | 1 cut(s) | 10 |
| AccII | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| AclWI | GGATC | 1 cut(s) | 693 |
| AcoI | YGGCCR | 4 cut(s) | 364, 870, 1482, 1530 |
| AcuI | CTGAAG | 1 cut(s) | 525 |
| AcyI | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| AfaI | GTAC | 3 cut(s) | 648, 1807, 1819 |
| AfeI | AGCGCT | 2 cut(s) | 892, 1388 |
| AflIII | ACRYGT | 3 cut(s) | 455, 1362, 1561 |
| AgeI | ACCGGT | 1 cut(s) | 735 |
| AjiI | CACGTC | 2 cut(s) | 14, 1096 |
| AjnI | CCWGG | 2 cut(s) | 17, 361 |
| AleI | CACNNNNGTG | 1 cut(s) | 933 |
| AluBI | AGCT | 8 cut(s) | 525, 1139, 1189, 1326, 1405, 1522, 1693, 1842 |
| AluI | AGCT | 8 cut(s) | 525, 1139, 1189, 1326, 1405, 1522, 1693, 1842 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| AlwI | GGATC | 1 cut(s) | 693 |
| Ama87I | CYCGRG | 1 cut(s) | 635 |
| Aor51HI | AGCGCT | 2 cut(s) | 892, 1388 |
| AoxI | GGCC | 9 cut(s) | 364, 870, 937, 1110, 1128, 1276, 1482, 1530, 1830 |
| ApaI | GGGCCC | 1 cut(s) | 1114 |
| ApeKI | GCWGC | 7 cut(s) | 802, 893, 904, 1022, 1384, 1594, 1639 |
| AsiGI | ACCGGT | 1 cut(s) | 735 |
| AspLEI | GCGC | 7 cut(s) | 661, 893, 1042, 1296, 1389, 1713, 1718 |
| AspS9I | GGNCC | 8 cut(s) | 861, 938, 1017, 1110, 1111, 1129, 1740, 1831 |
| AsuC2I | CCSGG | 4 cut(s) | 432, 542, 874, 1027 |
| AsuHPI | GGTGA | 9 cut(s) | 572, 592, 842, 1015, 1021, 1114, 1241, 1308, 1681 |
| AvaI | CYCGRG | 1 cut(s) | 635 |
| AvaII | GGWCC | 3 cut(s) | 861, 1017, 1740 |
| BaeGI | GKGCMC | 1 cut(s) | 1114 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 571, 604 |
| BalI | TGGCCA | 2 cut(s) | 1484, 1532 |
| BanI | GGYRCC | 5 cut(s) | 86, 147, 208, 269, 1171 |
| BanII | GRGCYC | 1 cut(s) | 1114 |
| BbsI | GAAGAC | 1 cut(s) | 362 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BbvCI | CCTCAGC | 1 cut(s) | 1406 |
| BbvI | GCAGC | 7 cut(s) | 789, 880, 916, 1009, 1396, 1581, 1651 |
| BccI | CCATC | 6 cut(s) | 591, 830, 1220, 1257, 1541, 1711 |
| BceAI | ACGGC | 4 cut(s) | 351, 479, 1163, 1277 |
| BciT130I | CCWGG | 2 cut(s) | 19, 363 |
| BclI | TGATCA | 1 cut(s) | 1309 |
| BcnI | CCSGG | 4 cut(s) | 432, 542, 874, 1027 |
| BfaI | CTAG | 2 cut(s) | 1265, 1280 |
| BfmI | CTRYAG | 1 cut(s) | 1595 |
| BfoI | RGCGCY | 3 cut(s) | 894, 1043, 1390 |
| BfuAI | ACCTGC | 1 cut(s) | 1183 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1708, 1766 |
| BlpI | GCTNAGC | 4 cut(s) | 60, 121, 182, 243 |
| Bme1390I | CCNGG | 6 cut(s) | 19, 363, 432, 542, 874, 1027 |
| Bme18I | GGWCC | 3 cut(s) | 861, 1017, 1740 |
| BmeT110I | CYCGRG | 1 cut(s) | 635 |
| BmgBI | CACGTC | 2 cut(s) | 14, 1096 |
| BmgT120I | GGNCC | 8 cut(s) | 861, 938, 1017, 1110, 1111, 1129, 1740, 1831 |
| BmrFI | CCNGG | 6 cut(s) | 19, 363, 432, 542, 874, 1027 |
| BmrI | ACTGGG | 1 cut(s) | 1675 |
| BmsI | GCATC | 1 cut(s) | 909 |
| BmuI | ACTGGG | 1 cut(s) | 1675 |
| BpiI | GAAGAC | 1 cut(s) | 362 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1178, 1210, 1637, 1669 |
| BpmI | CTGGAG | 4 cut(s) | 1064, 1412, 1639, 1753 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1406 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 60, 121, 182, 243 |
| BpuMI | CCSGG | 4 cut(s) | 432, 542, 874, 1027 |
| BsaHI | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| BsaI | GGTCTC | 2 cut(s) | 965, 1430 |
| BsaWI | WCCGGW | 3 cut(s) | 5, 735, 793 |
| Bse118I | RCCGGY | 4 cut(s) | 735, 844, 964, 1000 |
| Bse1I | ACTGG | 4 cut(s) | 754, 781, 1464, 1681 |
| BseBI | CCWGG | 2 cut(s) | 19, 363 |
| BseGI | GGATG | 2 cut(s) | 841, 924 |
| BseMII | CTCAG | 7 cut(s) | 74, 135, 196, 257, 318, 1397, 1656 |
| BseNI | ACTGG | 4 cut(s) | 754, 781, 1464, 1681 |
| BseRI | GAGGAG | 2 cut(s) | 681, 1007 |
| BseSI | GKGCMC | 1 cut(s) | 1114 |
| BseX3I | CGGCCG | 1 cut(s) | 870 |
| BseXI | GCAGC | 7 cut(s) | 789, 880, 916, 1009, 1396, 1581, 1651 |
| BseYI | CCCAGC | 1 cut(s) | 899 |
| BsgI | GTGCAG | 3 cut(s) | 872, 1340, 1658 |
| Bsh1236I | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| Bsh1285I | CGRYCG | 2 cut(s) | 557, 873 |
| BshFI | GGCC | 9 cut(s) | 366, 872, 939, 1112, 1130, 1278, 1484, 1532, 1832 |
| BshNI | GGYRCC | 5 cut(s) | 86, 147, 208, 269, 1171 |
| BshTI | ACCGGT | 1 cut(s) | 735 |
| BsiEI | CGRYCG | 2 cut(s) | 557, 873 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 635 |
| BslFI | GGGAC | 5 cut(s) | 337, 652, 874, 1365, 1556 |
| BsmBI | CGTCTC | 2 cut(s) | 1439, 1570 |
| BsmFI | GGGAC | 5 cut(s) | 337, 652, 874, 1365, 1556 |
| BsnI | GGCC | 9 cut(s) | 366, 872, 939, 1112, 1130, 1278, 1484, 1532, 1832 |
| Bso31I | GGTCTC | 2 cut(s) | 965, 1430 |
| BsoBI | CYCGRG | 1 cut(s) | 635 |
| Bsp120I | GGGCCC | 1 cut(s) | 1110 |
| Bsp1286I | GDGCHC | 2 cut(s) | 480, 1114 |
| Bsp143I | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 60, 121, 182, 243 |
| BspANI | GGCC | 9 cut(s) | 366, 872, 939, 1112, 1130, 1278, 1484, 1532, 1832 |
| BspCNI | CTCAG | 7 cut(s) | 73, 134, 195, 256, 317, 1398, 1657 |
| BspFNI | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| BspMAI | CTGCAG | 1 cut(s) | 1599 |
| BspMI | ACCTGC | 1 cut(s) | 1183 |
| BspPI | GGATC | 1 cut(s) | 693 |
| BspQI | GCTCTTC | 1 cut(s) | 485 |
| BspT107I | GGYRCC | 5 cut(s) | 86, 147, 208, 269, 1171 |
| BspTNI | GGTCTC | 2 cut(s) | 965, 1430 |
| BsrBI | CCGCTC | 5 cut(s) | 916, 1234, 1474, 1540, 1603 |
| BsrFI | RCCGGY | 4 cut(s) | 735, 844, 964, 1000 |
| BsrI | ACTGG | 4 cut(s) | 754, 781, 1464, 1681 |
| BssAI | RCCGGY | 4 cut(s) | 735, 844, 964, 1000 |
| BssMI | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| BssNI | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| BssT1I | CCWWGG | 7 cut(s) | 90, 151, 212, 273, 1420, 1485, 1614 |
| Bst2UI | CCWGG | 2 cut(s) | 19, 363 |
| Bst4CI | ACNGT | 4 cut(s) | 537, 577, 976, 1153 |
| Bst6I | CTCTTC | 4 cut(s) | 485, 658, 1077, 1250 |
| BstACI | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| BstDEI | CTNAG | 8 cut(s) | 60, 121, 182, 243, 304, 567, 1406, 1665 |
| BstDSI | CCRYGG | 1 cut(s) | 1513 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1595 |
| BstF5I | GGATG | 2 cut(s) | 841, 924 |
| BstFNI | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| BstH2I | RGCGCY | 3 cut(s) | 894, 1043, 1390 |
| BstHHI | GCGC | 7 cut(s) | 661, 893, 1042, 1296, 1389, 1713, 1718 |
| BstKTI | GATC | 5 cut(s) | 557, 688, 1107, 1312, 1731 |
| BstMBI | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| BstMCI | CGRYCG | 2 cut(s) | 557, 873 |
| BstNI | CCWGG | 2 cut(s) | 19, 363 |
| BstNSI | RCATGY | 2 cut(s) | 1366, 1784 |
| BstSCI | CCNGG | 6 cut(s) | 17, 361, 430, 540, 872, 1025 |
| BstSFI | CTRYAG | 1 cut(s) | 1595 |
| BstSLI | GKGCMC | 1 cut(s) | 1114 |
| BstUI | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| BstV1I | GCAGC | 7 cut(s) | 789, 880, 916, 1009, 1396, 1581, 1651 |
| BstV2I | GAAGAC | 1 cut(s) | 362 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 935 |
| BstZI | CGGCCG | 1 cut(s) | 870 |
| BsuRI | GGCC | 9 cut(s) | 366, 872, 939, 1112, 1130, 1278, 1484, 1532, 1832 |
| BtgI | CCRYGG | 1 cut(s) | 1513 |
| BtgZI | GCGATG | 1 cut(s) | 1570 |
| BtrI | CACGTC | 2 cut(s) | 14, 1096 |
| BtsCI | GGATG | 2 cut(s) | 841, 924 |
| BveI | ACCTGC | 1 cut(s) | 1183 |
| CfoI | GCGC | 7 cut(s) | 661, 893, 1042, 1296, 1389, 1713, 1718 |
| Cfr10I | RCCGGY | 4 cut(s) | 735, 844, 964, 1000 |
| Cfr13I | GGNCC | 8 cut(s) | 861, 938, 1017, 1110, 1111, 1129, 1740, 1831 |
| Cfr42I | CCGCGG | 1 cut(s) | 1516 |
| CseI | GACGC | 5 cut(s) | 425, 1365, 1552, 1707, 1754 |
| Csp6I | GTAC | 3 cut(s) | 647, 1806, 1818 |
| CspAI | ACCGGT | 1 cut(s) | 735 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 592, 627, 1288, 1323 |
| CviAII | CATG | 3 cut(s) | 1363, 1781, 1828 |
| CviQI | GTAC | 3 cut(s) | 647, 1806, 1818 |
| DdeI | CTNAG | 8 cut(s) | 60, 121, 182, 243, 304, 567, 1406, 1665 |
| DpnI | GATC | 5 cut(s) | 556, 687, 1106, 1311, 1730 |
| DpnII | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| EaeI | YGGCCR | 4 cut(s) | 364, 870, 1482, 1530 |
| EagI | CGGCCG | 1 cut(s) | 870 |
| Eam1104I | CTCTTC | 4 cut(s) | 485, 658, 1077, 1250 |
| EarI | CTCTTC | 4 cut(s) | 485, 658, 1077, 1250 |
| EciI | GGCGGA | 5 cut(s) | 37, 716, 983, 1131, 1505 |
| EclXI | CGGCCG | 1 cut(s) | 870 |
| Eco130I | CCWWGG | 7 cut(s) | 90, 151, 212, 273, 1420, 1485, 1614 |
| Eco24I | GRGCYC | 1 cut(s) | 1114 |
| Eco31I | GGTCTC | 2 cut(s) | 965, 1430 |
| Eco47I | GGWCC | 3 cut(s) | 861, 1017, 1740 |
| Eco47III | AGCGCT | 2 cut(s) | 892, 1388 |
| Eco52I | CGGCCG | 1 cut(s) | 870 |
| Eco57I | CTGAAG | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 1 cut(s) | 635 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1595 |
| EcoO109I | RGGNCCY | 3 cut(s) | 861, 1110, 1129 |
| EcoRII | CCWGG | 2 cut(s) | 17, 361 |
| EcoT14I | CCWWGG | 7 cut(s) | 90, 151, 212, 273, 1420, 1485, 1614 |
| EcoT38I | GRGCYC | 1 cut(s) | 1114 |
| ErhI | CCWWGG | 7 cut(s) | 90, 151, 212, 273, 1420, 1485, 1614 |
| Esp3I | CGTCTC | 2 cut(s) | 1439, 1570 |
| FaeI | CATG | 3 cut(s) | 1366, 1784, 1831 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1373, 1405 |
| FaqI | GGGAC | 5 cut(s) | 337, 652, 874, 1365, 1556 |
| FatI | CATG | 3 cut(s) | 1362, 1780, 1827 |
| FbaI | TGATCA | 1 cut(s) | 1309 |
| FblI | GTMKAC | 1 cut(s) | 10 |
| FokI | GGATG | 2 cut(s) | 848, 931 |
| FriOI | GRGCYC | 1 cut(s) | 1114 |
| FspBI | CTAG | 2 cut(s) | 1265, 1280 |
| GlaI | GCGC | 7 cut(s) | 660, 892, 1041, 1295, 1388, 1712, 1717 |
| GsaI | CCCAGC | 1 cut(s) | 903 |
| GsuI | CTGGAG | 4 cut(s) | 1064, 1412, 1639, 1753 |
| HaeII | RGCGCY | 3 cut(s) | 894, 1043, 1390 |
| HaeIII | GGCC | 9 cut(s) | 366, 872, 939, 1112, 1130, 1278, 1484, 1532, 1832 |
| HgaI | GACGC | 5 cut(s) | 425, 1365, 1552, 1707, 1754 |
| HhaI | GCGC | 7 cut(s) | 661, 893, 1042, 1296, 1389, 1713, 1718 |
| Hin1I | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| Hin1II | CATG | 3 cut(s) | 1366, 1784, 1831 |
| Hin6I | GCGC | 7 cut(s) | 659, 891, 1040, 1294, 1387, 1711, 1716 |
| HinP1I | GCGC | 7 cut(s) | 659, 891, 1040, 1294, 1387, 1711, 1716 |
| HincII | GTYRAC | 1 cut(s) | 1066 |
| HindII | GTYRAC | 1 cut(s) | 1066 |
| HindIII | AAGCTT | 1 cut(s) | 1691 |
| HinfI | GANTC | 5 cut(s) | 622, 1067, 1193, 1287, 1646 |
| HphI | GGTGA | 9 cut(s) | 572, 592, 842, 1015, 1021, 1114, 1241, 1308, 1681 |
| Hpy166II | GTNNAC | 6 cut(s) | 11, 461, 580, 649, 1066, 1650 |
| Hpy188I | TCNGA | 7 cut(s) | 499, 690, 733, 787, 1204, 1689, 1744 |
| Hpy188III | TCNNGA | 5 cut(s) | 619, 637, 1429, 1656, 1732 |
| Hpy8I | GTNNAC | 6 cut(s) | 11, 461, 580, 649, 1066, 1650 |
| Hpy99I | CGWCG | 4 cut(s) | 419, 555, 1059, 1748 |
| HpyAV | CCTTC | 6 cut(s) | 77, 877, 904, 946, 1120, 1444 |
| HpyCH4III | ACNGT | 4 cut(s) | 537, 577, 976, 1153 |
| HpyCH4IV | ACGT | 5 cut(s) | 13, 457, 1054, 1095, 1527 |
| HpyCH4V | TGCA | 7 cut(s) | 853, 961, 1357, 1505, 1597, 1639, 1780 |
| HpyF3I | CTNAG | 8 cut(s) | 60, 121, 182, 243, 304, 567, 1406, 1665 |
| HpySE526I | ACGT | 5 cut(s) | 13, 457, 1054, 1095, 1527 |
| Hsp92I | GRCGYC | 3 cut(s) | 417, 1376, 1746 |
| Hsp92II | CATG | 3 cut(s) | 1366, 1784, 1831 |
| HspAI | GCGC | 7 cut(s) | 659, 891, 1040, 1294, 1387, 1711, 1716 |
| KflI | GGGWCCC | 1 cut(s) | 861 |
| Ksp22I | TGATCA | 1 cut(s) | 1309 |
| KspI | CCGCGG | 1 cut(s) | 1516 |
| Kzo9I | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| LguI | GCTCTTC | 1 cut(s) | 485 |
| LmnI | GCTCC | 7 cut(s) | 522, 913, 994, 1144, 1402, 1576, 1600 |
| Lsp1109I | GCAGC | 7 cut(s) | 789, 880, 916, 1009, 1396, 1581, 1651 |
| LweI | GCATC | 1 cut(s) | 909 |
| MaeI | CTAG | 2 cut(s) | 1265, 1280 |
| MaeII | ACGT | 5 cut(s) | 13, 457, 1054, 1095, 1527 |
| MalI | GATC | 5 cut(s) | 556, 687, 1106, 1311, 1730 |
| MbiI | CCGCTC | 5 cut(s) | 916, 1234, 1474, 1540, 1603 |
| MboI | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| MboII | GAAGA | 7 cut(s) | 362, 472, 518, 675, 1094, 1135, 1237 |
| MfeI | CAATTG | 1 cut(s) | 1305 |
| MhlI | GDGCHC | 2 cut(s) | 480, 1114 |
| MlsI | TGGCCA | 2 cut(s) | 1484, 1532 |
| MluCI | AATT | 4 cut(s) | 391, 710, 1305, 1800 |
| MluI | ACGCGT | 1 cut(s) | 1561 |
| MluNI | TGGCCA | 2 cut(s) | 1484, 1532 |
| MlyI | GAGTC | 3 cut(s) | 1061, 1187, 1655 |
| MmeI | TCCRAC | 2 cut(s) | 1554, 1767 |
| Mox20I | TGGCCA | 2 cut(s) | 1484, 1532 |
| MscI | TGGCCA | 2 cut(s) | 1484, 1532 |
| MseI | TTAA | 1 cut(s) | 426 |
| MslI | CAYNNNNRTG | 4 cut(s) | 828, 933, 1367, 1634 |
| Msp20I | TGGCCA | 2 cut(s) | 1484, 1532 |
| MspR9I | CCNGG | 6 cut(s) | 19, 363, 432, 542, 874, 1027 |
| MteI | GCGCNGCGC | 1 cut(s) | 1714 |
| MunI | CAATTG | 1 cut(s) | 1305 |
| MvaI | CCWGG | 2 cut(s) | 19, 363 |
| MvnI | CGCG | 8 cut(s) | 659, 661, 676, 1294, 1515, 1563, 1713, 1718 |
| NciI | CCSGG | 4 cut(s) | 432, 542, 874, 1027 |
| NdeII | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| NlaIII | CATG | 3 cut(s) | 1366, 1784, 1831 |
| NmeAIII | GCCGAG | 3 cut(s) | 1102, 1307, 1774 |
| NmuCI | GTSAC | 8 cut(s) | 74, 135, 196, 257, 318, 451, 1009, 1496 |
| NspI | RCATGY | 2 cut(s) | 1366, 1784 |
| OliI | CACNNNNGTG | 1 cut(s) | 933 |
| PaqCI | CACCTGC | 1 cut(s) | 1183 |
| PciI | ACATGT | 1 cut(s) | 1362 |
| PciSI | GCTCTTC | 1 cut(s) | 485 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1298, 1365, 1533 |
| PfeI | GAWTC | 2 cut(s) | 622, 1287 |
| PflFI | GACNNNGTC | 4 cut(s) | 133, 194, 255, 316 |
| PfoI | TCCNGGA | 1 cut(s) | 540 |
| PinAI | ACCGGT | 1 cut(s) | 735 |
| Ple19I | CGATCG | 1 cut(s) | 557 |
| PleI | GAGTC | 3 cut(s) | 1061, 1187, 1654 |
| PpsI | GAGTC | 3 cut(s) | 1061, 1187, 1654 |
| PpuMI | RGGWCCY | 1 cut(s) | 861 |
| PscI | ACATGT | 1 cut(s) | 1362 |
| Psp5II | RGGWCCY | 1 cut(s) | 861 |
| Psp6I | CCWGG | 2 cut(s) | 17, 361 |
| PspFI | CCCAGC | 1 cut(s) | 899 |
| PspGI | CCWGG | 2 cut(s) | 17, 361 |
| PspOMI | GGGCCC | 1 cut(s) | 1110 |
| PspPI | GGNCC | 8 cut(s) | 861, 938, 1017, 1110, 1111, 1129, 1740, 1831 |
| PspPPI | RGGWCCY | 1 cut(s) | 861 |
| PstI | CTGCAG | 1 cut(s) | 1599 |
| PsyI | GACNNNGTC | 4 cut(s) | 133, 194, 255, 316 |
| PvuI | CGATCG | 1 cut(s) | 557 |
| RsaI | GTAC | 3 cut(s) | 648, 1807, 1819 |
| RsaNI | GTAC | 3 cut(s) | 647, 1806, 1818 |
| RseI | CAYNNNNRTG | 4 cut(s) | 828, 933, 1367, 1634 |
| SacII | CCGCGG | 1 cut(s) | 1516 |
| SapI | GCTCTTC | 1 cut(s) | 485 |
| SaqAI | TTAA | 1 cut(s) | 426 |
| Sau3AI | GATC | 5 cut(s) | 554, 685, 1104, 1309, 1728 |
| Sau96I | GGNCC | 8 cut(s) | 861, 938, 1017, 1110, 1111, 1129, 1740, 1831 |
| SchI | GAGTC | 3 cut(s) | 1061, 1187, 1655 |
| ScrFI | CCNGG | 6 cut(s) | 19, 363, 432, 542, 874, 1027 |
| SduI | GDGCHC | 2 cut(s) | 480, 1114 |
| SfaNI | GCATC | 1 cut(s) | 909 |
| SfcI | CTRYAG | 1 cut(s) | 1595 |
| Sfr303I | CCGCGG | 1 cut(s) | 1516 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1000 |
| SgrBI | CCGCGG | 1 cut(s) | 1516 |
| SinI | GGWCC | 3 cut(s) | 861, 1017, 1740 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 828, 933, 1367, 1634 |
| Sse9I | AATT | 4 cut(s) | 391, 710, 1305, 1800 |
| SspMI | CTAG | 2 cut(s) | 1265, 1280 |
| StyD4I | CCNGG | 6 cut(s) | 17, 361, 430, 540, 872, 1025 |
| StyI | CCWWGG | 7 cut(s) | 90, 151, 212, 273, 1420, 1485, 1614 |
| TaaI | ACNGT | 4 cut(s) | 537, 577, 976, 1153 |
| TaiI | ACGT | 5 cut(s) | 16, 460, 1057, 1098, 1530 |
| TaqI | TCGA | 4 cut(s) | 725, 754, 1395, 1536 |
| TasI | AATT | 4 cut(s) | 391, 710, 1305, 1800 |
| TfiI | GAWTC | 2 cut(s) | 622, 1287 |
| Tru1I | TTAA | 1 cut(s) | 426 |
| Tru9I | TTAA | 1 cut(s) | 426 |
| TseFI | GTSAC | 8 cut(s) | 74, 135, 196, 257, 318, 451, 1009, 1496 |
| TseI | GCWGC | 7 cut(s) | 802, 893, 904, 1022, 1384, 1594, 1639 |
| Tsp45I | GTSAC | 8 cut(s) | 74, 135, 196, 257, 318, 451, 1009, 1496 |
| TspDTI | ATGAA | 1 cut(s) | 1572 |
| Tth111I | GACNNNGTC | 4 cut(s) | 133, 194, 255, 316 |
| VpaK11BI | GGWCC | 3 cut(s) | 861, 1017, 1740 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1595 |
| XceI | RCATGY | 2 cut(s) | 1366, 1784 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 824 |
| XmiI | GTMKAC | 1 cut(s) | 10 |
| XspI | CTAG | 2 cut(s) | 1265, 1280 |