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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 443 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1504 |
| Acc36I | ACCTGC | 3 cut(s) | 443, 1113, 2351 |
| Acc65I | GGTACC | 1 cut(s) | 2486 |
| AccB1I | GGYRCC | 5 cut(s) | 434, 622, 1609, 2270, 2486 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 159, 258, 640, 687 |
| AccBSI | CCGCTC | 5 cut(s) | 983, 1345, 1672, 1699, 2041 |
| AccI | GTMKAC | 2 cut(s) | 444, 1101 |
| AccIII | TCCGGA | 1 cut(s) | 289 |
| AclWI | GGATC | 3 cut(s) | 631, 1040, 1314 |
| AcoI | YGGCCR | 6 cut(s) | 702, 1296, 1920, 1968, 2100, 2163 |
| AcsI | RAATTY | 1 cut(s) | 650 |
| AcuI | CTGAAG | 4 cut(s) | 131, 1744, 2159, 2166 |
| AcvI | CACGTG | 1 cut(s) | 2450 |
| AcyI | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| AfaI | GTAC | 7 cut(s) | 782, 917, 995, 1646, 2155, 2365, 2488 |
| AfeI | AGCGCT | 1 cut(s) | 1321 |
| AflIII | ACRYGT | 3 cut(s) | 48, 1999, 2253 |
| AgeI | ACCGGT | 1 cut(s) | 2168 |
| AgsI | TTSAA | 6 cut(s) | 1127, 2177, 2185, 2203, 2260, 2561 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 868 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 2 cut(s) | 257, 639 |
| AleI | CACNNNNGTG | 1 cut(s) | 1362 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1661, 1693 |
| AluBI | AGCT | 9 cut(s) | 170, 329, 523, 1627, 1764, 1843, 1960, 2357, 2513 |
| AluI | AGCT | 9 cut(s) | 170, 329, 523, 1627, 1764, 1843, 1960, 2357, 2513 |
| Alw21I | GWGCWC | 1 cut(s) | 1845 |
| Alw26I | GTCTC | 6 cut(s) | 1250, 1512, 1521, 1868, 1888, 2327 |
| AlwI | GGATC | 3 cut(s) | 631, 1040, 1314 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 640 |
| Ama87I | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| Aor13HI | TCCGGA | 1 cut(s) | 289 |
| Aor51HI | AGCGCT | 1 cut(s) | 1321 |
| ApaI | GGGCCC | 2 cut(s) | 744, 2239 |
| ApoI | RAATTY | 1 cut(s) | 650 |
| AsiGI | ACCGGT | 1 cut(s) | 2168 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 759 |
| Asp718I | GGTACC | 1 cut(s) | 2486 |
| AsuHPI | GGTGA | 4 cut(s) | 320, 529, 1459, 2135 |
| AsuII | TTCGAA | 1 cut(s) | 1164 |
| AsuNHI | GCTAGC | 1 cut(s) | 365 |
| AvaI | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| AvaII | GGWCC | 7 cut(s) | 885, 1119, 1177, 1367, 1548, 2409, 2520 |
| BaeGI | GKGCMC | 3 cut(s) | 627, 744, 2239 |
| BalI | TGGCCA | 2 cut(s) | 704, 1922 |
| BanI | GGYRCC | 5 cut(s) | 434, 622, 1609, 2270, 2486 |
| BanII | GRGCYC | 4 cut(s) | 744, 1845, 2239, 2499 |
| BauI | CACGAG | 1 cut(s) | 584 |
| BbrPI | CACGTG | 1 cut(s) | 2450 |
| BbsI | GAAGAC | 2 cut(s) | 1592, 2213 |
| Bbv12I | GWGCWC | 1 cut(s) | 1845 |
| BccI | CCATC | 9 cut(s) | 161, 260, 425, 1168, 1625, 1695, 1979, 2092, 2477 |
| BceAI | ACGGC | 7 cut(s) | 425, 563, 1283, 1311, 1442, 1515, 1755 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 424, 458 |
| BciT130I | CCWGG | 2 cut(s) | 259, 641 |
| BcoDI | GTCTC | 6 cut(s) | 1250, 1512, 1521, 1868, 1888, 2327 |
| BfaI | CTAG | 4 cut(s) | 131, 330, 366, 1628 |
| BfmI | CTRYAG | 4 cut(s) | 245, 900, 2033, 2358 |
| BfoI | RGCGCY | 7 cut(s) | 793, 839, 1323, 1481, 1495, 1613, 2274 |
| BfuAI | ACCTGC | 3 cut(s) | 443, 1113, 2351 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1574 |
| BmcAI | AGTACT | 1 cut(s) | 2155 |
| Bme18I | GGWCC | 7 cut(s) | 885, 1119, 1177, 1367, 1548, 2409, 2520 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 868 |
| BmeT110I | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmrI | ACTGGG | 1 cut(s) | 2496 |
| BmsI | GCATC | 1 cut(s) | 1338 |
| BmtI | GCTAGC | 1 cut(s) | 369 |
| BmuI | ACTGGG | 1 cut(s) | 2496 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1298, 2339 |
| BpiI | GAAGAC | 2 cut(s) | 1592, 2213 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 536, 568, 1420, 1452, 1616, 1648 |
| BpmI | CTGGAG | 5 cut(s) | 617, 1422, 1502, 1850, 2483 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1844 |
| Bpu14I | TTCGAA | 1 cut(s) | 1164 |
| BpuEI | CTTGAG | 1 cut(s) | 838 |
| Bsa29I | ATCGAT | 1 cut(s) | 1620 |
| BsaAI | YACGTR | 2 cut(s) | 784, 2450 |
| BsaHI | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| BsaI | GGTCTC | 1 cut(s) | 1868 |
| BsaWI | WCCGGW | 4 cut(s) | 289, 483, 501, 2168 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1196, 1226, 1518, 1548, 1661, 1691, 1895, 1925 |
| Bse118I | RCCGGY | 3 cut(s) | 1387, 2168, 2311 |
| Bse1I | ACTGG | 7 cut(s) | 881, 1087, 1273, 1424, 1439, 1902, 2502 |
| BseAI | TCCGGA | 1 cut(s) | 289 |
| BseBI | CCWGG | 2 cut(s) | 259, 641 |
| BseCI | ATCGAT | 1 cut(s) | 1620 |
| BseGI | GGATG | 9 cut(s) | 153, 252, 468, 492, 547, 1353, 2103, 2395, 2488 |
| BseMII | CTCAG | 5 cut(s) | 441, 1304, 1494, 1858, 2208 |
| BseNI | ACTGG | 7 cut(s) | 881, 1087, 1273, 1424, 1439, 1902, 2502 |
| BseRI | GAGGAG | 1 cut(s) | 1430 |
| BseSI | GKGCMC | 3 cut(s) | 627, 744, 2239 |
| BseX3I | CGGCCG | 1 cut(s) | 1296 |
| BseYI | CCCAGC | 8 cut(s) | 562, 1233, 1463, 1702, 2116, 2353, 2412, 2424 |
| BsgI | GTGCAG | 1 cut(s) | 2096 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1299, 2540, 2544 |
| BshNI | GGYRCC | 5 cut(s) | 434, 622, 1609, 2270, 2486 |
| BshTI | ACCGGT | 1 cut(s) | 2168 |
| BshVI | ATCGAT | 1 cut(s) | 1620 |
| BsiEI | CGRYCG | 3 cut(s) | 1299, 2540, 2544 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1845 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| BslFI | GGGAC | 9 cut(s) | 176, 875, 898, 999, 1300, 1534, 1994, 2309, 2395 |
| BsmAI | GTCTC | 6 cut(s) | 1250, 1512, 1521, 1868, 1888, 2327 |
| BsmBI | CGTCTC | 2 cut(s) | 1250, 1521 |
| BsmFI | GGGAC | 9 cut(s) | 176, 875, 898, 999, 1300, 1534, 1994, 2309, 2395 |
| BsmI | GAATGC | 2 cut(s) | 409, 1160 |
| Bso31I | GGTCTC | 1 cut(s) | 1868 |
| BsoBI | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| Bsp119I | TTCGAA | 1 cut(s) | 1164 |
| Bsp120I | GGGCCC | 2 cut(s) | 740, 2235 |
| Bsp1286I | GDGCHC | 5 cut(s) | 627, 744, 1845, 2239, 2499 |
| Bsp13I | TCCGGA | 1 cut(s) | 289 |
| Bsp143I | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| Bsp68I | TCGCGA | 2 cut(s) | 1008, 1155 |
| BspCNI | CTCAG | 5 cut(s) | 440, 1303, 1495, 1857, 2209 |
| BspDI | ATCGAT | 1 cut(s) | 1620 |
| BspEI | TCCGGA | 1 cut(s) | 289 |
| BspMAI | CTGCAG | 2 cut(s) | 2037, 2362 |
| BspMI | ACCTGC | 3 cut(s) | 443, 1113, 2351 |
| BspOI | GCTAGC | 1 cut(s) | 369 |
| BspPI | GGATC | 3 cut(s) | 631, 1040, 1314 |
| BspQI | GCTCTTC | 1 cut(s) | 1833 |
| BspT104I | TTCGAA | 1 cut(s) | 1164 |
| BspT107I | GGYRCC | 5 cut(s) | 434, 622, 1609, 2270, 2486 |
| BspTNI | GGTCTC | 1 cut(s) | 1868 |
| BsrBI | CCGCTC | 5 cut(s) | 983, 1345, 1672, 1699, 2041 |
| BsrFI | RCCGGY | 3 cut(s) | 1387, 2168, 2311 |
| BsrI | ACTGG | 7 cut(s) | 881, 1087, 1273, 1424, 1439, 1902, 2502 |
| BssAI | RCCGGY | 3 cut(s) | 1387, 2168, 2311 |
| BssMI | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| BssNI | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| BssSI | CACGAG | 1 cut(s) | 584 |
| BssT1I | CCWWGG | 2 cut(s) | 793, 1923 |
| Bst2BI | CACGAG | 1 cut(s) | 584 |
| Bst2UI | CCWGG | 2 cut(s) | 259, 641 |
| Bst4CI | ACNGT | 4 cut(s) | 748, 908, 1243, 1405 |
| Bst6I | CTCTTC | 6 cut(s) | 150, 378, 1008, 1515, 1688, 1833 |
| BstACI | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| BstBAI | YACGTR | 2 cut(s) | 784, 2450 |
| BstBI | TTCGAA | 1 cut(s) | 1164 |
| BstDEI | CTNAG | 8 cut(s) | 201, 300, 427, 857, 1290, 1503, 1844, 2217 |
| BstDSI | CCRYGG | 1 cut(s) | 1951 |
| BstEII | GGTNACC | 1 cut(s) | 2128 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2033 |
| BstF5I | GGATG | 9 cut(s) | 153, 252, 468, 492, 547, 1353, 2103, 2395, 2488 |
| BstH2I | RGCGCY | 7 cut(s) | 793, 839, 1323, 1481, 1495, 1613, 2274 |
| BstKTI | GATC | 6 cut(s) | 639, 1035, 1309, 2025, 2527, 2540 |
| BstMAI | GTCTC | 6 cut(s) | 1250, 1512, 1521, 1868, 1888, 2327 |
| BstMBI | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| BstMCI | CGRYCG | 3 cut(s) | 1299, 2540, 2544 |
| BstNI | CCWGG | 2 cut(s) | 259, 641 |
| BstNSI | RCATGY | 1 cut(s) | 2257 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1298, 2339 |
| BstPI | GGTNACC | 1 cut(s) | 2128 |
| BstSFI | CTRYAG | 4 cut(s) | 245, 900, 2033, 2358 |
| BstSLI | GKGCMC | 3 cut(s) | 627, 744, 2239 |
| BstV2I | GAAGAC | 2 cut(s) | 1592, 2213 |
| BstX2I | RGATCY | 1 cut(s) | 636 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1364 |
| BstYI | RGATCY | 1 cut(s) | 636 |
| BstZI | CGGCCG | 1 cut(s) | 1296 |
| Bsu15I | ATCGAT | 1 cut(s) | 1620 |
| BsuTUI | ATCGAT | 1 cut(s) | 1620 |
| BtgI | CCRYGG | 1 cut(s) | 1951 |
| BtgZI | GCGATG | 1 cut(s) | 1187 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 9 cut(s) | 153, 252, 468, 492, 547, 1353, 2103, 2395, 2488 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 215 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 215, 744, 1401, 1431, 1446 |
| BtuMI | TCGCGA | 2 cut(s) | 1008, 1155 |
| BveI | ACCTGC | 3 cut(s) | 443, 1113, 2351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 640 |
| Cfr10I | RCCGGY | 3 cut(s) | 1387, 2168, 2311 |
| Cfr42I | CCGCGG | 1 cut(s) | 1954 |
| Cfr9I | CCCGGG | 1 cut(s) | 2475 |
| ClaI | ATCGAT | 1 cut(s) | 1620 |
| CseI | GACGC | 9 cut(s) | 80, 176, 275, 883, 1166, 1803, 1955, 2218, 2312 |
| Csp6I | GTAC | 7 cut(s) | 781, 916, 994, 1645, 2154, 2364, 2487 |
| CspAI | ACCGGT | 1 cut(s) | 2168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2155, 2190 |
| CviAII | CATG | 5 cut(s) | 104, 706, 1210, 1796, 2254 |
| CviQI | GTAC | 7 cut(s) | 781, 916, 994, 1645, 2154, 2364, 2487 |
| DdeI | CTNAG | 8 cut(s) | 201, 300, 427, 857, 1290, 1503, 1844, 2217 |
| DinI | GGCGCC | 2 cut(s) | 1611, 2272 |
| DpnI | GATC | 6 cut(s) | 638, 1034, 1308, 2024, 2526, 2539 |
| DpnII | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1504 |
| DriI | GACNNNNNGTC | 1 cut(s) | 868 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1504 |
| EaeI | YGGCCR | 6 cut(s) | 702, 1296, 1920, 1968, 2100, 2163 |
| EagI | CGGCCG | 1 cut(s) | 1296 |
| Eam1104I | CTCTTC | 6 cut(s) | 150, 378, 1008, 1515, 1688, 1833 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 868 |
| EarI | CTCTTC | 6 cut(s) | 150, 378, 1008, 1515, 1688, 1833 |
| EciI | GGCGGA | 8 cut(s) | 80, 1063, 1199, 1916, 1943, 2077, 2417, 2495 |
| Ecl136II | GAGCTC | 1 cut(s) | 1843 |
| EclXI | CGGCCG | 1 cut(s) | 1296 |
| Eco130I | CCWWGG | 2 cut(s) | 793, 1923 |
| Eco147I | AGGCCT | 1 cut(s) | 551 |
| Eco24I | GRGCYC | 4 cut(s) | 744, 1845, 2239, 2499 |
| Eco31I | GGTCTC | 1 cut(s) | 1868 |
| Eco32I | GATATC | 1 cut(s) | 1728 |
| Eco47I | GGWCC | 7 cut(s) | 885, 1119, 1177, 1367, 1548, 2409, 2520 |
| Eco47III | AGCGCT | 1 cut(s) | 1321 |
| Eco52I | CGGCCG | 1 cut(s) | 1296 |
| Eco53kI | GAGCTC | 1 cut(s) | 1843 |
| Eco57I | CTGAAG | 4 cut(s) | 131, 1744, 2159, 2166 |
| Eco72I | CACGTG | 1 cut(s) | 2450 |
| Eco88I | CYCGRG | 4 cut(s) | 2238, 2371, 2475, 2514 |
| Eco91I | GGTNACC | 1 cut(s) | 2128 |
| EcoICRI | GAGCTC | 1 cut(s) | 1843 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2033 |
| EcoO109I | RGGNCCY | 6 cut(s) | 740, 885, 1548, 2235, 2409, 2431 |
| EcoO65I | GGTNACC | 1 cut(s) | 2128 |
| EcoRII | CCWGG | 2 cut(s) | 257, 639 |
| EcoRV | GATATC | 1 cut(s) | 1728 |
| EcoT14I | CCWWGG | 2 cut(s) | 793, 1923 |
| EcoT38I | GRGCYC | 4 cut(s) | 744, 1845, 2239, 2499 |
| EgeI | GGCGCC | 2 cut(s) | 1611, 2272 |
| EheI | GGCGCC | 2 cut(s) | 1611, 2272 |
| ErhI | CCWWGG | 2 cut(s) | 793, 1923 |
| Esp3I | CGTCTC | 2 cut(s) | 1250, 1521 |
| FaeI | CATG | 5 cut(s) | 107, 709, 1213, 1799, 2257 |
| FaqI | GGGAC | 9 cut(s) | 176, 875, 898, 999, 1300, 1534, 1994, 2309, 2395 |
| FatI | CATG | 5 cut(s) | 103, 705, 1209, 1795, 2253 |
| FblI | GTMKAC | 2 cut(s) | 444, 1101 |
| FokI | GGATG | 9 cut(s) | 140, 239, 475, 499, 554, 1360, 2110, 2382, 2495 |
| FriOI | GRGCYC | 4 cut(s) | 744, 1845, 2239, 2499 |
| FspBI | CTAG | 4 cut(s) | 131, 330, 366, 1628 |
| GsaI | CCCAGC | 8 cut(s) | 566, 1237, 1467, 1706, 2120, 2357, 2416, 2428 |
| GsuI | CTGGAG | 5 cut(s) | 617, 1422, 1502, 1850, 2483 |
| HaeII | RGCGCY | 7 cut(s) | 793, 839, 1323, 1481, 1495, 1613, 2274 |
| HgaI | GACGC | 9 cut(s) | 80, 176, 275, 883, 1166, 1803, 1955, 2218, 2312 |
| Hin1I | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| Hin1II | CATG | 5 cut(s) | 107, 709, 1213, 1799, 2257 |
| HincII | GTYRAC | 2 cut(s) | 445, 1102 |
| HindII | GTYRAC | 2 cut(s) | 445, 1102 |
| HphI | GGTGA | 4 cut(s) | 320, 529, 1459, 2135 |
| Hpy166II | GTNNAC | 7 cut(s) | 445, 583, 781, 814, 996, 1102, 1249 |
| Hpy8I | GTNNAC | 7 cut(s) | 445, 583, 781, 814, 996, 1102, 1249 |
| HpyCH4III | ACNGT | 4 cut(s) | 748, 908, 1243, 1405 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 801, 1384, 1795, 2035, 2077, 2360 |
| HpyF3I | CTNAG | 8 cut(s) | 201, 300, 427, 857, 1290, 1503, 1844, 2217 |
| Hsp92I | GRCGYC | 4 cut(s) | 1610, 1814, 1947, 2271 |
| Hsp92II | CATG | 5 cut(s) | 107, 709, 1213, 1799, 2257 |
| KasI | GGCGCC | 2 cut(s) | 1609, 2270 |
| KflI | GGGWCCC | 2 cut(s) | 1548, 2409 |
| Kpn2I | TCCGGA | 1 cut(s) | 289 |
| KpnI | GGTACC | 1 cut(s) | 2490 |
| KroI | GCCGGC | 1 cut(s) | 2311 |
| KroNI | GCCGGC | 1 cut(s) | 2313 |
| KspI | CCGCGG | 1 cut(s) | 1954 |
| Kzo9I | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| LguI | GCTCTTC | 1 cut(s) | 1833 |
| LmnI | GCTCC | 9 cut(s) | 377, 833, 1342, 1417, 1432, 1669, 1987, 2014, 2038 |
| LweI | GCATC | 1 cut(s) | 1338 |
| MaeI | CTAG | 4 cut(s) | 131, 330, 366, 1628 |
| MaeIII | GTNAC | 5 cut(s) | 1399, 1405, 1447, 2128, 2445 |
| MalI | GATC | 6 cut(s) | 638, 1034, 1308, 2024, 2526, 2539 |
| MbiI | CCGCTC | 5 cut(s) | 983, 1345, 1672, 1699, 2041 |
| MboI | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| MfeI | CAATTG | 1 cut(s) | 1743 |
| MflI | RGATCY | 1 cut(s) | 636 |
| MhlI | GDGCHC | 5 cut(s) | 627, 744, 1845, 2239, 2499 |
| MlsI | TGGCCA | 2 cut(s) | 704, 1922 |
| MluCI | AATT | 3 cut(s) | 650, 1195, 1743 |
| MluNI | TGGCCA | 2 cut(s) | 704, 1922 |
| Mly113I | GGCGCC | 2 cut(s) | 1610, 2271 |
| MlyI | GAGTC | 9 cut(s) | 857, 1159, 1214, 1282, 1477, 1514, 1625, 2093, 2413 |
| MmeI | TCCRAC | 4 cut(s) | 994, 1992, 2418, 2531 |
| Mox20I | TGGCCA | 2 cut(s) | 704, 1922 |
| MroI | TCCGGA | 1 cut(s) | 289 |
| MroNI | GCCGGC | 1 cut(s) | 2311 |
| MroXI | GAANNNNTTC | 1 cut(s) | 759 |
| MscI | TGGCCA | 2 cut(s) | 704, 1922 |
| MseI | TTAA | 2 cut(s) | 480, 957 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1362, 2072 |
| Msp20I | TGGCCA | 2 cut(s) | 704, 1922 |
| MunI | CAATTG | 1 cut(s) | 1743 |
| Mva1269I | GAATGC | 2 cut(s) | 409, 1160 |
| MvaI | CCWGG | 2 cut(s) | 259, 641 |
| NaeI | GCCGGC | 1 cut(s) | 2313 |
| NarI | GGCGCC | 2 cut(s) | 1610, 2271 |
| NdeII | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| NgoMIV | GCCGGC | 1 cut(s) | 2311 |
| NheI | GCTAGC | 1 cut(s) | 365 |
| NlaIII | CATG | 5 cut(s) | 107, 709, 1213, 1799, 2257 |
| NmeAIII | GCCGAG | 3 cut(s) | 1243, 1666, 1745 |
| NmuCI | GTSAC | 4 cut(s) | 1399, 1405, 1447, 2445 |
| NruI | TCGCGA | 2 cut(s) | 1008, 1155 |
| NspI | RCATGY | 1 cut(s) | 2257 |
| NspV | TTCGAA | 1 cut(s) | 1164 |
| OliI | CACNNNNGTG | 1 cut(s) | 1362 |
| PaeR7I | CTCGAG | 1 cut(s) | 2514 |
| PaqCI | CACCTGC | 1 cut(s) | 443 |
| PasI | CCCWGGG | 1 cut(s) | 258 |
| PceI | AGGCCT | 1 cut(s) | 551 |
| PciI | ACATGT | 1 cut(s) | 2253 |
| PciSI | GCTCTTC | 1 cut(s) | 1833 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 283 |
| PctI | GAATGC | 2 cut(s) | 409, 1160 |
| PdiI | GCCGGC | 1 cut(s) | 2313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 759 |
| PfeI | GAWTC | 4 cut(s) | 35, 83, 410, 556 |
| PflFI | GACNNNGTC | 1 cut(s) | 2282 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 159, 258, 640, 687 |
| PinAI | ACCGGT | 1 cut(s) | 2168 |
| Ple19I | CGATCG | 1 cut(s) | 2540 |
| PleI | GAGTC | 9 cut(s) | 857, 1158, 1213, 1282, 1476, 1513, 1625, 2092, 2413 |
| PluTI | GGCGCC | 2 cut(s) | 1613, 2274 |
| PmaCI | CACGTG | 1 cut(s) | 2450 |
| PmlI | CACGTG | 1 cut(s) | 2450 |
| PpsI | GAGTC | 9 cut(s) | 857, 1158, 1213, 1282, 1476, 1513, 1625, 2092, 2413 |
| Ppu21I | YACGTR | 2 cut(s) | 784, 2450 |
| PpuMI | RGGWCCY | 3 cut(s) | 885, 1548, 2409 |
| PscI | ACATGT | 1 cut(s) | 2253 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1298, 2339 |
| Psp124BI | GAGCTC | 1 cut(s) | 1845 |
| Psp5II | RGGWCCY | 3 cut(s) | 885, 1548, 2409 |
| Psp6I | CCWGG | 2 cut(s) | 257, 639 |
| PspCI | CACGTG | 1 cut(s) | 2450 |
| PspEI | GGTNACC | 1 cut(s) | 2128 |
| PspFI | CCCAGC | 8 cut(s) | 562, 1233, 1463, 1702, 2116, 2353, 2412, 2424 |
| PspGI | CCWGG | 2 cut(s) | 257, 639 |
| PspOMI | GGGCCC | 2 cut(s) | 740, 2235 |
| PspPPI | RGGWCCY | 3 cut(s) | 885, 1548, 2409 |
| PspXI | VCTCGAGB | 1 cut(s) | 2514 |
| PstI | CTGCAG | 2 cut(s) | 2037, 2362 |
| PstNI | CAGNNNCTG | 1 cut(s) | 640 |
| PsuI | RGATCY | 1 cut(s) | 636 |
| PsyI | GACNNNGTC | 1 cut(s) | 2282 |
| PvuI | CGATCG | 1 cut(s) | 2540 |
| PvuII | CAGCTG | 1 cut(s) | 2357 |
| RruI | TCGCGA | 2 cut(s) | 1008, 1155 |
| RsaI | GTAC | 7 cut(s) | 782, 917, 995, 1646, 2155, 2365, 2488 |
| RsaNI | GTAC | 7 cut(s) | 781, 916, 994, 1645, 2154, 2364, 2487 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1362, 2072 |
| SacI | GAGCTC | 1 cut(s) | 1845 |
| SacII | CCGCGG | 1 cut(s) | 1954 |
| SalI | GTCGAC | 2 cut(s) | 443, 1100 |
| SapI | GCTCTTC | 1 cut(s) | 1833 |
| SaqAI | TTAA | 2 cut(s) | 480, 957 |
| Sau3AI | GATC | 6 cut(s) | 636, 1032, 1306, 2022, 2524, 2537 |
| ScaI | AGTACT | 1 cut(s) | 2155 |
| SchI | GAGTC | 9 cut(s) | 857, 1159, 1214, 1282, 1477, 1514, 1625, 2093, 2413 |
| SduI | GDGCHC | 5 cut(s) | 627, 744, 1845, 2239, 2499 |
| SfaNI | GCATC | 1 cut(s) | 1338 |
| SfcI | CTRYAG | 4 cut(s) | 245, 900, 2033, 2358 |
| SfoI | GGCGCC | 2 cut(s) | 1611, 2272 |
| Sfr274I | CTCGAG | 1 cut(s) | 2514 |
| Sfr303I | CCGCGG | 1 cut(s) | 1954 |
| SfuI | TTCGAA | 1 cut(s) | 1164 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2168 |
| SgrBI | CCGCGG | 1 cut(s) | 1954 |
| SgrDI | CGTCGACG | 1 cut(s) | 443 |
| SinI | GGWCC | 7 cut(s) | 885, 1119, 1177, 1367, 1548, 2409, 2520 |
| SlaI | CTCGAG | 1 cut(s) | 2514 |
| SmaI | CCCGGG | 1 cut(s) | 2477 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1362, 2072 |
| SmlI | CTYRAG | 2 cut(s) | 817, 2514 |
| SmoI | CTYRAG | 2 cut(s) | 817, 2514 |
| Sse9I | AATT | 3 cut(s) | 650, 1195, 1743 |
| SseBI | AGGCCT | 1 cut(s) | 551 |
| SspDI | GGCGCC | 2 cut(s) | 1609, 2270 |
| SspMI | CTAG | 4 cut(s) | 131, 330, 366, 1628 |
| SstI | GAGCTC | 1 cut(s) | 1845 |
| StuI | AGGCCT | 1 cut(s) | 551 |
| StyI | CCWWGG | 2 cut(s) | 793, 1923 |
| TaaI | ACNGT | 4 cut(s) | 748, 908, 1243, 1405 |
| TaqII | GACCGA | 1 cut(s) | 2530 |
| TasI | AATT | 3 cut(s) | 650, 1195, 1743 |
| TatI | WGTACW | 1 cut(s) | 2153 |
| TfiI | GAWTC | 4 cut(s) | 35, 83, 410, 556 |
| Tru1I | TTAA | 2 cut(s) | 480, 957 |
| Tru9I | TTAA | 2 cut(s) | 480, 957 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 222, 751, 1408, 1431, 1446 |
| TseFI | GTSAC | 4 cut(s) | 1399, 1405, 1447, 2445 |
| Tsp45I | GTSAC | 4 cut(s) | 1399, 1405, 1447, 2445 |
| TspDTI | ATGAA | 3 cut(s) | 503, 722, 2010 |
| TspMI | CCCGGG | 1 cut(s) | 2475 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 222, 751, 1408, 1431, 1446 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2282 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 159, 258, 640, 687 |
| VpaK11BI | GGWCC | 7 cut(s) | 885, 1119, 1177, 1367, 1548, 2409, 2520 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2033 |
| XapI | RAATTY | 1 cut(s) | 650 |
| XceI | RCATGY | 1 cut(s) | 2257 |
| XhoI | CTCGAG | 1 cut(s) | 2514 |
| XmaI | CCCGGG | 1 cut(s) | 2475 |
| XmiI | GTMKAC | 2 cut(s) | 444, 1101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 759 |
| XspI | CTAG | 4 cut(s) | 131, 330, 366, 1628 |
| ZrmI | AGTACT | 1 cut(s) | 2155 |