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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 436, 728 |
| AatII | GACGTC | 1 cut(s) | 905 |
| Acc36I | ACCTGC | 2 cut(s) | 436, 728 |
| Acc65I | GGTACC | 1 cut(s) | 890 |
| AccB1I | GGYRCC | 3 cut(s) | 638, 767, 890 |
| AccBSI | CCGCTC | 5 cut(s) | 241, 394, 553, 774, 917 |
| AclWI | GGATC | 1 cut(s) | 469 |
| AcoI | YGGCCR | 2 cut(s) | 535, 800 |
| AcuI | CTGAAG | 3 cut(s) | 137, 464, 533 |
| AcyI | GRCGYC | 3 cut(s) | 111, 675, 902 |
| AfaI | GTAC | 1 cut(s) | 892 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 381, 388, 484, 622, 737, 809, 921 |
| AgsI | TTSAA | 2 cut(s) | 92, 607 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 906 |
| AjiI | CACGTC | 1 cut(s) | 427 |
| AjnI | CCWGG | 2 cut(s) | 210, 919 |
| Alw26I | GTCTC | 4 cut(s) | 272, 281, 575, 855 |
| AlwI | GGATC | 1 cut(s) | 469 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 752 |
| AoxI | GGCC | 6 cut(s) | 72, 171, 178, 429, 535, 800 |
| ApeKI | GCWGC | 3 cut(s) | 436, 626, 986 |
| AseI | ATTAAT | 1 cut(s) | 54 |
| Asp718I | GGTACC | 1 cut(s) | 890 |
| AspLEI | GCGC | 3 cut(s) | 25, 318, 874 |
| AspS9I | GGNCC | 4 cut(s) | 72, 430, 812, 924 |
| AsuC2I | CCSGG | 2 cut(s) | 383, 880 |
| AsuHPI | GGTGA | 4 cut(s) | 350, 418, 752, 806 |
| AvaII | GGWCC | 2 cut(s) | 812, 924 |
| AxyI | CCTNAGG | 2 cut(s) | 175, 762 |
| BaeGI | GKGCMC | 1 cut(s) | 772 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 882, 915 |
| BanI | GGYRCC | 3 cut(s) | 638, 767, 890 |
| BauI | CACGAG | 1 cut(s) | 852 |
| BbvCI | CCTCAGC | 1 cut(s) | 248 |
| BbvI | GCAGC | 3 cut(s) | 423, 638, 973 |
| BccI | CCATC | 6 cut(s) | 128, 189, 803, 877, 881, 902 |
| BceAI | ACGGC | 1 cut(s) | 554 |
| BciT130I | CCWGG | 2 cut(s) | 212, 921 |
| BclI | TGATCA | 1 cut(s) | 754 |
| BcnI | CCSGG | 2 cut(s) | 383, 880 |
| BcoDI | GTCTC | 4 cut(s) | 272, 281, 575, 855 |
| BfaI | CTAG | 5 cut(s) | 59, 599, 708, 725, 906 |
| BfmI | CTRYAG | 2 cut(s) | 437, 576 |
| BfoI | RGCGCY | 1 cut(s) | 319 |
| BfuAI | ACCTGC | 2 cut(s) | 436, 728 |
| BisI | GCNGC | 4 cut(s) | 437, 627, 642, 987 |
| BlpI | GCTNAGC | 2 cut(s) | 507, 549 |
| BlsI | GCNGC | 4 cut(s) | 438, 628, 643, 988 |
| Bme1390I | CCNGG | 4 cut(s) | 212, 383, 880, 921 |
| Bme18I | GGWCC | 2 cut(s) | 812, 924 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 906 |
| BmgBI | CACGTC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 4 cut(s) | 72, 430, 812, 924 |
| BmiI | GGNNCC | 5 cut(s) | 557, 640, 769, 892, 925 |
| BmrFI | CCNGG | 4 cut(s) | 212, 383, 880, 921 |
| BmsI | GCATC | 2 cut(s) | 227, 556 |
| BpmI | CTGGAG | 4 cut(s) | 302, 437, 542, 706 |
| Bpu10I | CCTNAGC | 1 cut(s) | 248 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 507, 549 |
| BpuMI | CCSGG | 2 cut(s) | 383, 880 |
| BsaHI | GRCGYC | 3 cut(s) | 111, 675, 902 |
| BsaI | GGTCTC | 2 cut(s) | 272, 575 |
| BsaJI | CCNNGG | 3 cut(s) | 327, 818, 920 |
| BsaWI | WCCGGW | 1 cut(s) | 826 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 381, 388, 484, 622, 737, 809, 921 |
| Bse118I | RCCGGY | 1 cut(s) | 802 |
| Bse1I | ACTGG | 1 cut(s) | 689 |
| Bse21I | CCTNAGG | 2 cut(s) | 175, 762 |
| BseBI | CCWGG | 2 cut(s) | 212, 921 |
| BseDI | CCNNGG | 3 cut(s) | 327, 818, 920 |
| BseGI | GGATG | 4 cut(s) | 355, 814, 888, 892 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 381, 388, 484, 622, 737, 809, 921 |
| BseMII | CTCAG | 4 cut(s) | 239, 498, 540, 753 |
| BseNI | ACTGG | 1 cut(s) | 689 |
| BseRI | GAGGAG | 2 cut(s) | 269, 299 |
| BseSI | GKGCMC | 1 cut(s) | 772 |
| BseXI | GCAGC | 3 cut(s) | 423, 638, 973 |
| BshFI | GGCC | 6 cut(s) | 74, 173, 180, 431, 537, 802 |
| BshNI | GGYRCC | 3 cut(s) | 638, 767, 890 |
| BsiSI | CCGG | 4 cut(s) | 382, 803, 827, 880 |
| BslFI | GGGAC | 1 cut(s) | 398 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 381, 388, 484, 622, 737, 809, 921 |
| BsmAI | GTCTC | 4 cut(s) | 272, 281, 575, 855 |
| BsmFI | GGGAC | 1 cut(s) | 398 |
| BsnI | GGCC | 6 cut(s) | 74, 173, 180, 431, 537, 802 |
| Bso31I | GGTCTC | 2 cut(s) | 272, 575 |
| Bsp1286I | GDGCHC | 1 cut(s) | 772 |
| Bsp143I | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 507, 549 |
| BspANI | GGCC | 6 cut(s) | 74, 173, 180, 431, 537, 802 |
| BspCNI | CTCAG | 4 cut(s) | 240, 499, 541, 754 |
| BspLI | GGNNCC | 5 cut(s) | 557, 640, 769, 892, 925 |
| BspMAI | CTGCAG | 1 cut(s) | 441 |
| BspMI | ACCTGC | 2 cut(s) | 436, 728 |
| BspPI | GGATC | 1 cut(s) | 469 |
| BspT107I | GGYRCC | 3 cut(s) | 638, 767, 890 |
| BspTNI | GGTCTC | 2 cut(s) | 272, 575 |
| BsrBI | CCGCTC | 5 cut(s) | 241, 394, 553, 774, 917 |
| BsrFI | RCCGGY | 1 cut(s) | 802 |
| BsrI | ACTGG | 1 cut(s) | 689 |
| BssAI | RCCGGY | 1 cut(s) | 802 |
| BssECI | CCNNGG | 3 cut(s) | 327, 818, 920 |
| BssMI | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| BssNI | GRCGYC | 3 cut(s) | 111, 675, 902 |
| BssSI | CACGAG | 1 cut(s) | 852 |
| BssT1I | CCWWGG | 1 cut(s) | 327 |
| Bst2BI | CACGAG | 1 cut(s) | 852 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 921 |
| Bst4CI | ACNGT | 3 cut(s) | 324, 577, 971 |
| BstACI | GRCGYC | 3 cut(s) | 111, 675, 902 |
| BstC8I | GCNNGC | 6 cut(s) | 166, 362, 705, 747, 772, 804 |
| BstDEI | CTNAG | 7 cut(s) | 175, 248, 507, 542, 549, 762, 865 |
| BstDSI | CCRYGG | 1 cut(s) | 818 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 620 |
| BstF5I | GGATG | 4 cut(s) | 355, 814, 888, 892 |
| BstH2I | RGCGCY | 1 cut(s) | 319 |
| BstHHI | GCGC | 3 cut(s) | 25, 318, 874 |
| BstKTI | GATC | 5 cut(s) | 105, 135, 477, 757, 931 |
| BstMAI | GTCTC | 4 cut(s) | 272, 281, 575, 855 |
| BstMBI | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 170, 361, 442, 517, 534, 632, 641 |
| BstNI | CCWGG | 2 cut(s) | 212, 921 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSCI | CCNGG | 4 cut(s) | 210, 381, 878, 919 |
| BstSFI | CTRYAG | 2 cut(s) | 437, 576 |
| BstSLI | GKGCMC | 1 cut(s) | 772 |
| BstV1I | GCAGC | 3 cut(s) | 423, 638, 973 |
| BstX2I | RGATCY | 1 cut(s) | 474 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 474 |
| Bsu36I | CCTNAGG | 2 cut(s) | 175, 762 |
| BsuRI | GGCC | 6 cut(s) | 74, 173, 180, 431, 537, 802 |
| BtgI | CCRYGG | 1 cut(s) | 818 |
| BtrI | CACGTC | 1 cut(s) | 427 |
| BtsCI | GGATG | 4 cut(s) | 355, 814, 888, 892 |
| BtsI | GCAGTG | 1 cut(s) | 834 |
| BtsIMutI | CAGTG | 3 cut(s) | 488, 834, 976 |
| BveI | ACCTGC | 2 cut(s) | 436, 728 |
| Cac8I | GCNNGC | 6 cut(s) | 166, 362, 705, 747, 772, 804 |
| CaiI | CAGNNNCTG | 1 cut(s) | 752 |
| CfoI | GCGC | 3 cut(s) | 25, 318, 874 |
| Cfr10I | RCCGGY | 1 cut(s) | 802 |
| Cfr13I | GGNCC | 4 cut(s) | 72, 430, 812, 924 |
| CseI | GACGC | 3 cut(s) | 71, 119, 664 |
| Csp6I | GTAC | 1 cut(s) | 891 |
| CviQI | GTAC | 1 cut(s) | 891 |
| DdeI | CTNAG | 7 cut(s) | 175, 248, 507, 542, 549, 762, 865 |
| DpnI | GATC | 5 cut(s) | 104, 134, 476, 756, 930 |
| DpnII | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| DriI | GACNNNNNGTC | 1 cut(s) | 906 |
| EaeI | YGGCCR | 2 cut(s) | 535, 800 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 906 |
| EciI | GGCGGA | 1 cut(s) | 821 |
| Eco130I | CCWWGG | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 2 cut(s) | 272, 575 |
| Eco47I | GGWCC | 2 cut(s) | 812, 924 |
| Eco57I | CTGAAG | 3 cut(s) | 137, 464, 533 |
| Eco81I | CCTNAGG | 2 cut(s) | 175, 762 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 620 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| EcoRII | CCWGG | 2 cut(s) | 210, 919 |
| EcoT14I | CCWWGG | 1 cut(s) | 327 |
| ErhI | CCWWGG | 1 cut(s) | 327 |
| FaiI | YATR | 5 cut(s) | 50, 302, 588, 612, 659 |
| FaqI | GGGAC | 1 cut(s) | 398 |
| FauI | CCCGC | 3 cut(s) | 348, 688, 779 |
| FbaI | TGATCA | 1 cut(s) | 754 |
| Fnu4HI | GCNGC | 4 cut(s) | 437, 627, 642, 987 |
| FokI | GGATG | 4 cut(s) | 362, 821, 895, 899 |
| Fsp4HI | GCNGC | 4 cut(s) | 437, 627, 642, 987 |
| FspBI | CTAG | 5 cut(s) | 59, 599, 708, 725, 906 |
| GlaI | GCGC | 3 cut(s) | 24, 317, 873 |
| GluI | GCNGC | 4 cut(s) | 437, 627, 642, 987 |
| GsuI | CTGGAG | 4 cut(s) | 302, 437, 542, 706 |
| HaeII | RGCGCY | 1 cut(s) | 319 |
| HaeIII | GGCC | 6 cut(s) | 74, 173, 180, 431, 537, 802 |
| HapII | CCGG | 4 cut(s) | 382, 803, 827, 880 |
| HgaI | GACGC | 3 cut(s) | 71, 119, 664 |
| HhaI | GCGC | 3 cut(s) | 25, 318, 874 |
| Hin1I | GRCGYC | 3 cut(s) | 111, 675, 902 |
| Hin6I | GCGC | 3 cut(s) | 23, 316, 872 |
| HinP1I | GCGC | 3 cut(s) | 23, 316, 872 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 5 cut(s) | 65, 157, 488, 718, 823 |
| HpaII | CCGG | 4 cut(s) | 382, 803, 827, 880 |
| HphI | GGTGA | 4 cut(s) | 350, 418, 752, 806 |
| Hpy188I | TCNGA | 6 cut(s) | 13, 109, 156, 272, 928, 933 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 898 |
| Hpy99I | CGWCG | 1 cut(s) | 113 |
| HpyAV | CCTTC | 2 cut(s) | 488, 625 |
| HpyCH4III | ACNGT | 3 cut(s) | 324, 577, 971 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 902 |
| HpyCH4V | TGCA | 2 cut(s) | 439, 737 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 170, 361, 442, 517, 534, 632, 641 |
| HpyF3I | CTNAG | 7 cut(s) | 175, 248, 507, 542, 549, 762, 865 |
| HpySE526I | ACGT | 2 cut(s) | 426, 902 |
| Hsp92I | GRCGYC | 3 cut(s) | 111, 675, 902 |
| HspAI | GCGC | 3 cut(s) | 23, 316, 872 |
| KpnI | GGTACC | 1 cut(s) | 894 |
| KroI | GCCGGC | 1 cut(s) | 802 |
| KroNI | GCCGGC | 1 cut(s) | 804 |
| Ksp22I | TGATCA | 1 cut(s) | 754 |
| Kzo9I | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| LmnI | GCTCC | 5 cut(s) | 277, 391, 555, 922, 994 |
| Lsp1109I | GCAGC | 3 cut(s) | 423, 638, 973 |
| LweI | GCATC | 2 cut(s) | 227, 556 |
| MaeI | CTAG | 5 cut(s) | 59, 599, 708, 725, 906 |
| MaeII | ACGT | 2 cut(s) | 426, 902 |
| MaeIII | GTNAC | 4 cut(s) | 338, 406, 571, 898 |
| MalI | GATC | 5 cut(s) | 104, 134, 476, 756, 930 |
| MbiI | CCGCTC | 5 cut(s) | 241, 394, 553, 774, 917 |
| MboI | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| MboII | GAAGA | 3 cut(s) | 74, 80, 526 |
| MflI | RGATCY | 1 cut(s) | 474 |
| MhlI | GDGCHC | 1 cut(s) | 772 |
| MluCI | AATT | 3 cut(s) | 18, 51, 859 |
| MlyI | GAGTC | 2 cut(s) | 727, 817 |
| MmeI | TCCRAC | 3 cut(s) | 132, 935, 976 |
| MroNI | GCCGGC | 1 cut(s) | 802 |
| MseI | TTAA | 3 cut(s) | 17, 54, 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 881 |
| MspA1I | CMGCKG | 1 cut(s) | 506 |
| MspI | CCGG | 4 cut(s) | 382, 803, 827, 880 |
| MspR9I | CCNGG | 4 cut(s) | 212, 383, 880, 921 |
| MvaI | CCWGG | 2 cut(s) | 212, 921 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 170, 361, 442, 517, 534, 632, 641 |
| NaeI | GCCGGC | 1 cut(s) | 804 |
| NciI | CCSGG | 2 cut(s) | 383, 880 |
| NdeII | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| NgoMIV | GCCGGC | 1 cut(s) | 802 |
| NlaIV | GGNNCC | 5 cut(s) | 557, 640, 769, 892, 925 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NmuCI | GTSAC | 3 cut(s) | 338, 406, 898 |
| PaqCI | CACCTGC | 2 cut(s) | 436, 728 |
| PdiI | GCCGGC | 1 cut(s) | 804 |
| PfeI | GAWTC | 3 cut(s) | 65, 157, 488 |
| PkrI | GCNGC | 4 cut(s) | 438, 628, 643, 988 |
| PleI | GAGTC | 2 cut(s) | 726, 817 |
| PpsI | GAGTC | 2 cut(s) | 726, 817 |
| PshBI | ATTAAT | 1 cut(s) | 54 |
| Psp6I | CCWGG | 2 cut(s) | 210, 919 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspGI | CCWGG | 2 cut(s) | 210, 919 |
| PspN4I | GGNNCC | 5 cut(s) | 557, 640, 769, 892, 925 |
| PspPI | GGNCC | 4 cut(s) | 72, 430, 812, 924 |
| PstI | CTGCAG | 1 cut(s) | 441 |
| PstNI | CAGNNNCTG | 1 cut(s) | 752 |
| PsuI | RGATCY | 1 cut(s) | 474 |
| RsaI | GTAC | 1 cut(s) | 892 |
| RsaNI | GTAC | 1 cut(s) | 891 |
| RseI | CAYNNNNRTG | 1 cut(s) | 881 |
| SaqAI | TTAA | 3 cut(s) | 17, 54, 378 |
| SatI | GCNGC | 4 cut(s) | 437, 627, 642, 987 |
| Sau3AI | GATC | 5 cut(s) | 102, 132, 474, 754, 928 |
| Sau96I | GGNCC | 4 cut(s) | 72, 430, 812, 924 |
| SchI | GAGTC | 2 cut(s) | 727, 817 |
| ScrFI | CCNGG | 4 cut(s) | 212, 383, 880, 921 |
| SduI | GDGCHC | 1 cut(s) | 772 |
| SfaNI | GCATC | 2 cut(s) | 227, 556 |
| SfcI | CTRYAG | 2 cut(s) | 437, 576 |
| SinI | GGWCC | 2 cut(s) | 812, 924 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 881 |
| Sse9I | AATT | 3 cut(s) | 18, 51, 859 |
| SspMI | CTAG | 5 cut(s) | 59, 599, 708, 725, 906 |
| StyD4I | CCNGG | 4 cut(s) | 210, 381, 878, 919 |
| StyI | CCWWGG | 1 cut(s) | 327 |
| TaaI | ACNGT | 3 cut(s) | 324, 577, 971 |
| TaiI | ACGT | 2 cut(s) | 429, 905 |
| TaqI | TCGA | 4 cut(s) | 131, 221, 654, 716 |
| TasI | AATT | 3 cut(s) | 18, 51, 859 |
| TauI | GCSGC | 1 cut(s) | 644 |
| TfiI | GAWTC | 3 cut(s) | 65, 157, 488 |
| Tru1I | TTAA | 3 cut(s) | 17, 54, 378 |
| Tru9I | TTAA | 3 cut(s) | 17, 54, 378 |
| TscAI | CASTG | 3 cut(s) | 488, 841, 976 |
| TseFI | GTSAC | 3 cut(s) | 338, 406, 898 |
| TseI | GCWGC | 3 cut(s) | 436, 626, 986 |
| Tsp45I | GTSAC | 3 cut(s) | 338, 406, 898 |
| TspGWI | ACGGA | 2 cut(s) | 178, 835 |
| TspRI | CASTG | 3 cut(s) | 488, 841, 976 |
| VpaK11BI | GGWCC | 2 cut(s) | 812, 924 |
| VspI | ATTAAT | 1 cut(s) | 54 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 620 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 865 |
| XspI | CTAG | 5 cut(s) | 59, 599, 708, 725, 906 |
| ZraI | GACGTC | 1 cut(s) | 903 |