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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 406 |
| AatII | GACGTC | 1 cut(s) | 263 |
| Acc36I | ACCTGC | 1 cut(s) | 406 |
| AccB1I | GGYRCC | 3 cut(s) | 608, 737, 860 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 850 |
| AccBSI | CCGCTC | 4 cut(s) | 286, 523, 744, 769 |
| AclWI | GGATC | 4 cut(s) | 32, 45, 439, 675 |
| AcoI | YGGCCR | 2 cut(s) | 114, 378 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AcuI | CTGAAG | 3 cut(s) | 53, 434, 503 |
| AcyI | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| AfaI | GTAC | 1 cut(s) | 563 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 351, 409, 454, 592, 850 |
| AgsI | TTSAA | 1 cut(s) | 233 |
| AjiI | CACGTC | 1 cut(s) | 397 |
| AjnI | CCWGG | 2 cut(s) | 312, 961 |
| AleI | CACNNNNGTG | 1 cut(s) | 866 |
| Alw21I | GWGCWC | 1 cut(s) | 961 |
| Alw26I | GTCTC | 5 cut(s) | 204, 251, 346, 387, 536 |
| AlwI | GGATC | 4 cut(s) | 32, 45, 439, 675 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 217 |
| AoxI | GGCC | 7 cut(s) | 114, 141, 300, 378, 399, 552, 840 |
| ApeKI | GCWGC | 5 cut(s) | 166, 211, 214, 406, 542 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| AspS9I | GGNCC | 3 cut(s) | 400, 782, 841 |
| AsuHPI | GGTGA | 3 cut(s) | 776, 880, 953 |
| AvaII | GGWCC | 1 cut(s) | 782 |
| AxyI | CCTNAGG | 1 cut(s) | 732 |
| BaeGI | GKGCMC | 3 cut(s) | 153, 742, 863 |
| BalI | TGGCCA | 1 cut(s) | 380 |
| BamHI | GGATCC | 1 cut(s) | 37 |
| BanI | GGYRCC | 3 cut(s) | 608, 737, 860 |
| BanII | GRGCYC | 2 cut(s) | 881, 961 |
| BauI | CACGAG | 1 cut(s) | 822 |
| Bbv12I | GWGCWC | 1 cut(s) | 961 |
| BbvCI | CCTCAGC | 1 cut(s) | 218 |
| BbvI | GCAGC | 5 cut(s) | 153, 223, 226, 393, 529 |
| BccI | CCATC | 6 cut(s) | 85, 353, 583, 766, 773, 932 |
| BceAI | ACGGC | 3 cut(s) | 101, 115, 513 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 524, 558 |
| BciT130I | CCWGG | 2 cut(s) | 314, 963 |
| BclI | TGATCA | 1 cut(s) | 724 |
| BcoDI | GTCTC | 5 cut(s) | 204, 251, 346, 387, 536 |
| BfmI | CTRYAG | 2 cut(s) | 407, 546 |
| BfuAI | ACCTGC | 1 cut(s) | 406 |
| BlpI | GCTNAGC | 3 cut(s) | 207, 477, 519 |
| BmcAI | AGTACT | 1 cut(s) | 563 |
| Bme1390I | CCNGG | 2 cut(s) | 314, 963 |
| Bme18I | GGWCC | 1 cut(s) | 782 |
| BmgBI | CACGTC | 1 cut(s) | 397 |
| BmgT120I | GGNCC | 3 cut(s) | 400, 782, 841 |
| BmiI | GGNNCC | 7 cut(s) | 39, 527, 610, 699, 739, 862, 895 |
| BmrFI | CCNGG | 2 cut(s) | 314, 963 |
| BmrI | ACTGGG | 1 cut(s) | 521 |
| BmsI | GCATC | 1 cut(s) | 246 |
| BmuI | ACTGGG | 1 cut(s) | 521 |
| BpmI | CTGGAG | 3 cut(s) | 552, 676, 945 |
| Bpu10I | CCTNAGC | 2 cut(s) | 42, 218 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 207, 477, 519 |
| BsaHI | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| BsaJI | CCNNGG | 3 cut(s) | 297, 788, 864 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 351, 409, 454, 592, 850 |
| Bse1I | ACTGG | 3 cut(s) | 516, 659, 855 |
| Bse21I | CCTNAGG | 1 cut(s) | 732 |
| BseBI | CCWGG | 2 cut(s) | 314, 963 |
| BseDI | CCNNGG | 3 cut(s) | 297, 788, 864 |
| BseGI | GGATG | 4 cut(s) | 96, 237, 777, 784 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 351, 409, 454, 592, 850 |
| BseMII | CTCAG | 7 cut(s) | 33, 198, 209, 273, 468, 510, 723 |
| BseNI | ACTGG | 3 cut(s) | 516, 659, 855 |
| BseRI | GAGGAG | 1 cut(s) | 239 |
| BseSI | GKGCMC | 3 cut(s) | 153, 742, 863 |
| BseXI | GCAGC | 5 cut(s) | 153, 223, 226, 393, 529 |
| BseYI | CCCAGC | 2 cut(s) | 325, 677 |
| BsgI | GTGCAG | 1 cut(s) | 152 |
| BshFI | GGCC | 7 cut(s) | 116, 143, 302, 380, 401, 554, 842 |
| BshNI | GGYRCC | 3 cut(s) | 608, 737, 860 |
| BsiHKAI | GWGCWC | 1 cut(s) | 961 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 351, 409, 454, 592, 850 |
| BsmAI | GTCTC | 5 cut(s) | 204, 251, 346, 387, 536 |
| BsmBI | CGTCTC | 4 cut(s) | 204, 251, 387, 536 |
| BsmI | GAATGC | 1 cut(s) | 572 |
| BsnI | GGCC | 7 cut(s) | 116, 143, 302, 380, 401, 554, 842 |
| Bsp1286I | GDGCHC | 5 cut(s) | 153, 742, 863, 881, 961 |
| Bsp143I | GATC | 4 cut(s) | 37, 444, 667, 724 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 207, 477, 519 |
| Bsp19I | CCATGG | 1 cut(s) | 864 |
| BspANI | GGCC | 7 cut(s) | 116, 143, 302, 380, 401, 554, 842 |
| BspCNI | CTCAG | 7 cut(s) | 34, 199, 210, 274, 469, 511, 724 |
| BspLI | GGNNCC | 7 cut(s) | 39, 527, 610, 699, 739, 862, 895 |
| BspMAI | CTGCAG | 1 cut(s) | 411 |
| BspMI | ACCTGC | 1 cut(s) | 406 |
| BspPI | GGATC | 4 cut(s) | 32, 45, 439, 675 |
| BspT107I | GGYRCC | 3 cut(s) | 608, 737, 860 |
| BsrBI | CCGCTC | 4 cut(s) | 286, 523, 744, 769 |
| BsrI | ACTGG | 3 cut(s) | 516, 659, 855 |
| BssECI | CCNNGG | 3 cut(s) | 297, 788, 864 |
| BssMI | GATC | 4 cut(s) | 37, 444, 667, 724 |
| BssNI | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| BssSI | CACGAG | 1 cut(s) | 822 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 864 |
| Bst2BI | CACGAG | 1 cut(s) | 822 |
| Bst2UI | CCWGG | 2 cut(s) | 314, 963 |
| Bst4CI | ACNGT | 2 cut(s) | 103, 177 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstACI | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| BstC8I | GCNNGC | 6 cut(s) | 71, 273, 675, 705, 742, 927 |
| BstDEI | CTNAG | 7 cut(s) | 42, 207, 218, 282, 477, 519, 732 |
| BstDSI | CCRYGG | 2 cut(s) | 788, 864 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 407, 590 |
| BstF5I | GGATG | 4 cut(s) | 96, 237, 777, 784 |
| BstKTI | GATC | 4 cut(s) | 40, 447, 670, 727 |
| BstMAI | GTCTC | 5 cut(s) | 204, 251, 346, 387, 536 |
| BstMBI | GATC | 4 cut(s) | 37, 444, 667, 724 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 20, 331, 412, 487, 551, 602, 611, 700 |
| BstNI | CCWGG | 2 cut(s) | 314, 963 |
| BstNSI | RCATGY | 2 cut(s) | 711, 929 |
| BstSCI | CCNGG | 2 cut(s) | 312, 961 |
| BstSFI | CTRYAG | 2 cut(s) | 407, 546 |
| BstSLI | GKGCMC | 3 cut(s) | 153, 742, 863 |
| BstV1I | GCAGC | 5 cut(s) | 153, 223, 226, 393, 529 |
| BstX2I | RGATCY | 2 cut(s) | 37, 444 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 835 |
| BstYI | RGATCY | 2 cut(s) | 37, 444 |
| Bsu36I | CCTNAGG | 1 cut(s) | 732 |
| BsuRI | GGCC | 7 cut(s) | 116, 143, 302, 380, 401, 554, 842 |
| BtgI | CCRYGG | 2 cut(s) | 788, 864 |
| BtrI | CACGTC | 1 cut(s) | 397 |
| BtsCI | GGATG | 4 cut(s) | 96, 237, 777, 784 |
| BtsI | GCAGTG | 2 cut(s) | 757, 804 |
| BtsIMutI | CAGTG | 4 cut(s) | 279, 757, 804, 848 |
| BveI | ACCTGC | 1 cut(s) | 406 |
| Cac8I | GCNNGC | 6 cut(s) | 71, 273, 675, 705, 742, 927 |
| CaiI | CAGNNNCTG | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 3 cut(s) | 400, 782, 841 |
| CseI | GACGC | 4 cut(s) | 177, 548, 634, 880 |
| CsiI | ACCWGGT | 1 cut(s) | 312 |
| Csp6I | GTAC | 1 cut(s) | 562 |
| CviAII | CATG | 5 cut(s) | 77, 708, 865, 913, 926 |
| CviQI | GTAC | 1 cut(s) | 562 |
| DdeI | CTNAG | 7 cut(s) | 42, 207, 218, 282, 477, 519, 732 |
| DpnI | GATC | 4 cut(s) | 39, 446, 669, 726 |
| DpnII | GATC | 4 cut(s) | 37, 444, 667, 724 |
| EaeI | YGGCCR | 2 cut(s) | 114, 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| EciI | GGCGGA | 5 cut(s) | 269, 290, 791, 869, 969 |
| Ecl136II | GAGCTC | 1 cut(s) | 959 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 864 |
| Eco147I | AGGCCT | 1 cut(s) | 554 |
| Eco24I | GRGCYC | 2 cut(s) | 881, 961 |
| Eco47I | GGWCC | 1 cut(s) | 782 |
| Eco53kI | GAGCTC | 1 cut(s) | 959 |
| Eco57I | CTGAAG | 3 cut(s) | 53, 434, 503 |
| Eco81I | CCTNAGG | 1 cut(s) | 732 |
| EcoICRI | GAGCTC | 1 cut(s) | 959 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 407, 590 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 2 cut(s) | 312, 961 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 864 |
| EcoT38I | GRGCYC | 2 cut(s) | 881, 961 |
| ErhI | CCWWGG | 2 cut(s) | 297, 864 |
| Esp3I | CGTCTC | 4 cut(s) | 204, 251, 387, 536 |
| FaeI | CATG | 5 cut(s) | 80, 711, 868, 916, 929 |
| FatI | CATG | 5 cut(s) | 76, 707, 864, 912, 925 |
| FauI | CCCGC | 4 cut(s) | 80, 211, 447, 749 |
| FbaI | TGATCA | 1 cut(s) | 724 |
| FokI | GGATG | 4 cut(s) | 103, 224, 784, 791 |
| FriOI | GRGCYC | 2 cut(s) | 881, 961 |
| GsaI | CCCAGC | 2 cut(s) | 329, 681 |
| GsuI | CTGGAG | 3 cut(s) | 552, 676, 945 |
| HaeIII | GGCC | 7 cut(s) | 116, 143, 302, 380, 401, 554, 842 |
| HgaI | GACGC | 4 cut(s) | 177, 548, 634, 880 |
| Hin1I | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| Hin1II | CATG | 5 cut(s) | 80, 711, 868, 916, 929 |
| HinfI | GANTC | 4 cut(s) | 5, 458, 688, 793 |
| HphI | GGTGA | 3 cut(s) | 776, 880, 953 |
| Hpy188I | TCNGA | 2 cut(s) | 242, 903 |
| Hpy188III | TCNNGA | 3 cut(s) | 31, 41, 533 |
| Hpy99I | CGWCG | 3 cut(s) | 193, 539, 542 |
| HpyAV | CCTTC | 5 cut(s) | 28, 227, 421, 458, 595 |
| HpyCH4III | ACNGT | 2 cut(s) | 103, 177 |
| HpyCH4IV | ACGT | 2 cut(s) | 260, 396 |
| HpyCH4V | TGCA | 5 cut(s) | 69, 169, 409, 707, 929 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 20, 331, 412, 487, 551, 602, 611, 700 |
| HpyF3I | CTNAG | 7 cut(s) | 42, 207, 218, 282, 477, 519, 732 |
| HpySE526I | ACGT | 2 cut(s) | 260, 396 |
| Hsp92I | GRCGYC | 4 cut(s) | 188, 260, 645, 872 |
| Hsp92II | CATG | 5 cut(s) | 80, 711, 868, 916, 929 |
| Ksp22I | TGATCA | 1 cut(s) | 724 |
| Kzo9I | GATC | 4 cut(s) | 37, 444, 667, 724 |
| LmnI | GCTCC | 7 cut(s) | 361, 412, 515, 525, 697, 956, 964 |
| Lsp1109I | GCAGC | 5 cut(s) | 153, 223, 226, 393, 529 |
| LweI | GCATC | 1 cut(s) | 246 |
| MabI | ACCWGGT | 1 cut(s) | 312 |
| MaeII | ACGT | 2 cut(s) | 260, 396 |
| MaeIII | GTNAC | 2 cut(s) | 308, 868 |
| MalI | GATC | 4 cut(s) | 39, 446, 669, 726 |
| MbiI | CCGCTC | 4 cut(s) | 286, 523, 744, 769 |
| MboI | GATC | 4 cut(s) | 37, 444, 667, 724 |
| MboII | GAAGA | 2 cut(s) | 49, 496 |
| MflI | RGATCY | 2 cut(s) | 37, 444 |
| MhlI | GDGCHC | 5 cut(s) | 153, 742, 863, 881, 961 |
| MlsI | TGGCCA | 1 cut(s) | 380 |
| MluCI | AATT | 2 cut(s) | 50, 829 |
| MluNI | TGGCCA | 1 cut(s) | 380 |
| MlyI | GAGTC | 3 cut(s) | 467, 697, 787 |
| MmeI | TCCRAC | 1 cut(s) | 265 |
| Mox20I | TGGCCA | 1 cut(s) | 380 |
| MscI | TGGCCA | 1 cut(s) | 380 |
| MslI | CAYNNNNRTG | 1 cut(s) | 866 |
| Msp20I | TGGCCA | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 3 cut(s) | 206, 217, 454 |
| MspR9I | CCNGG | 2 cut(s) | 314, 963 |
| Mva1269I | GAATGC | 1 cut(s) | 572 |
| MvaI | CCWGG | 2 cut(s) | 314, 963 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 20, 331, 412, 487, 551, 602, 611, 700 |
| NcoI | CCATGG | 1 cut(s) | 864 |
| NdeII | GATC | 4 cut(s) | 37, 444, 667, 724 |
| NlaIII | CATG | 5 cut(s) | 80, 711, 868, 916, 929 |
| NlaIV | GGNNCC | 7 cut(s) | 39, 527, 610, 699, 739, 862, 895 |
| NmeAIII | GCCGAG | 3 cut(s) | 49, 119, 900 |
| NmuCI | GTSAC | 2 cut(s) | 308, 868 |
| NspI | RCATGY | 2 cut(s) | 711, 929 |
| OliI | CACNNNNGTG | 1 cut(s) | 866 |
| PaeI | GCATGC | 1 cut(s) | 929 |
| PaqCI | CACCTGC | 1 cut(s) | 406 |
| PceI | AGGCCT | 1 cut(s) | 554 |
| PctI | GAATGC | 1 cut(s) | 572 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 850 |
| PleI | GAGTC | 3 cut(s) | 466, 696, 787 |
| PpsI | GAGTC | 3 cut(s) | 466, 696, 787 |
| Psp124BI | GAGCTC | 1 cut(s) | 961 |
| Psp6I | CCWGG | 2 cut(s) | 312, 961 |
| PspFI | CCCAGC | 2 cut(s) | 325, 677 |
| PspGI | CCWGG | 2 cut(s) | 312, 961 |
| PspN4I | GGNNCC | 7 cut(s) | 39, 527, 610, 699, 739, 862, 895 |
| PspPI | GGNCC | 3 cut(s) | 400, 782, 841 |
| PstI | CTGCAG | 1 cut(s) | 411 |
| PstNI | CAGNNNCTG | 1 cut(s) | 217 |
| PsuI | RGATCY | 2 cut(s) | 37, 444 |
| PvuII | CAGCTG | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 563 |
| RsaNI | GTAC | 1 cut(s) | 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 866 |
| SacI | GAGCTC | 1 cut(s) | 961 |
| Sau3AI | GATC | 4 cut(s) | 37, 444, 667, 724 |
| Sau96I | GGNCC | 3 cut(s) | 400, 782, 841 |
| ScaI | AGTACT | 1 cut(s) | 563 |
| SchI | GAGTC | 3 cut(s) | 467, 697, 787 |
| ScrFI | CCNGG | 2 cut(s) | 314, 963 |
| SduI | GDGCHC | 5 cut(s) | 153, 742, 863, 881, 961 |
| SexAI | ACCWGGT | 1 cut(s) | 312 |
| SfaNI | GCATC | 1 cut(s) | 246 |
| SfcI | CTRYAG | 2 cut(s) | 407, 546 |
| SinI | GGWCC | 1 cut(s) | 782 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 866 |
| SphI | GCATGC | 1 cut(s) | 929 |
| Sse9I | AATT | 2 cut(s) | 50, 829 |
| SseBI | AGGCCT | 1 cut(s) | 554 |
| SstI | GAGCTC | 1 cut(s) | 961 |
| StuI | AGGCCT | 1 cut(s) | 554 |
| StyD4I | CCNGG | 2 cut(s) | 312, 961 |
| StyI | CCWWGG | 2 cut(s) | 297, 864 |
| TaaI | ACNGT | 2 cut(s) | 103, 177 |
| TaiI | ACGT | 2 cut(s) | 263, 399 |
| TaqI | TCGA | 7 cut(s) | 191, 348, 534, 576, 624, 686, 936 |
| TaqII | GACCGA | 1 cut(s) | 908 |
| TasI | AATT | 2 cut(s) | 50, 829 |
| TatI | WGTACW | 1 cut(s) | 561 |
| TauI | GCSGC | 9 cut(s) | 76, 188, 289, 425, 599, 614, 617, 703, 912 |
| TscAI | CASTG | 4 cut(s) | 286, 757, 811, 855 |
| TseFI | GTSAC | 2 cut(s) | 308, 868 |
| TseI | GCWGC | 5 cut(s) | 166, 211, 214, 406, 542 |
| Tsp45I | GTSAC | 2 cut(s) | 308, 868 |
| TspGWI | ACGGA | 1 cut(s) | 805 |
| TspRI | CASTG | 4 cut(s) | 286, 757, 811, 855 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 782 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 407, 590 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XceI | RCATGY | 2 cut(s) | 711, 929 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 835 |
| ZraI | GACGTC | 1 cut(s) | 261 |
| ZrmI | AGTACT | 1 cut(s) | 563 |