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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 233 |
| AccB1I | GGYRCC | 4 cut(s) | 163, 233, 549, 1061 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 401, 915 |
| AccBSI | CCGCTC | 3 cut(s) | 352, 613, 792 |
| AclWI | GGATC | 2 cut(s) | 681, 1096 |
| AcoI | YGGCCR | 4 cut(s) | 373, 388, 603, 1038 |
| AcsI | RAATTY | 1 cut(s) | 464 |
| AcuI | CTGAAG | 3 cut(s) | 236, 500, 689 |
| AcyI | GRCGYC | 1 cut(s) | 550 |
| AfaI | GTAC | 2 cut(s) | 61, 235 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 69, 314, 401, 559, 612, 775, 796, 915, 1126 |
| AflIII | ACRYGT | 1 cut(s) | 888 |
| AgsI | TTSAA | 4 cut(s) | 713, 895, 1010, 1136 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 34 |
| AjnI | CCWGG | 2 cut(s) | 938, 1084 |
| AluBI | AGCT | 4 cut(s) | 532, 595, 662, 1109 |
| AluI | AGCT | 4 cut(s) | 532, 595, 662, 1109 |
| Alw26I | GTCTC | 2 cut(s) | 503, 512 |
| AlwI | GGATC | 2 cut(s) | 681, 1096 |
| Ama87I | CYCGRG | 2 cut(s) | 620, 1154 |
| ApeKI | GCWGC | 7 cut(s) | 98, 327, 511, 725, 800, 872, 1148 |
| ApoI | RAATTY | 1 cut(s) | 464 |
| Asp718I | GGTACC | 1 cut(s) | 233 |
| AspLEI | GCGC | 2 cut(s) | 103, 552 |
| AspS9I | GGNCC | 4 cut(s) | 91, 143, 616, 1112 |
| AsuC2I | CCSGG | 1 cut(s) | 769 |
| AsuHPI | GGTGA | 5 cut(s) | 329, 770, 871, 931, 977 |
| AvaI | CYCGRG | 2 cut(s) | 620, 1154 |
| AvaII | GGWCC | 2 cut(s) | 143, 616 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BalI | TGGCCA | 1 cut(s) | 605 |
| BanI | GGYRCC | 4 cut(s) | 163, 233, 549, 1061 |
| BanII | GRGCYC | 2 cut(s) | 430, 1076 |
| BbvI | GCAGC | 7 cut(s) | 85, 314, 523, 712, 787, 859, 1135 |
| BccI | CCATC | 5 cut(s) | 399, 812, 844, 917, 1052 |
| BceAI | ACGGC | 4 cut(s) | 230, 360, 403, 1025 |
| BciT130I | CCWGG | 2 cut(s) | 940, 1086 |
| BclI | TGATCA | 1 cut(s) | 1093 |
| BcnI | CCSGG | 1 cut(s) | 769 |
| BcoDI | GTCTC | 2 cut(s) | 503, 512 |
| BfaI | CTAG | 3 cut(s) | 647, 1052, 1106 |
| BfoI | RGCGCY | 1 cut(s) | 553 |
| Bme1390I | CCNGG | 3 cut(s) | 769, 940, 1086 |
| Bme18I | GGWCC | 2 cut(s) | 143, 616 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 34 |
| BmeT110I | CYCGRG | 2 cut(s) | 620, 1154 |
| BmgT120I | GGNCC | 4 cut(s) | 91, 143, 616, 1112 |
| BmrFI | CCNGG | 3 cut(s) | 769, 940, 1086 |
| BmrI | ACTGGG | 1 cut(s) | 925 |
| BmsI | GCATC | 3 cut(s) | 198, 422, 571 |
| BmuI | ACTGGG | 1 cut(s) | 925 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 557, 589 |
| BpmI | CTGGAG | 5 cut(s) | 218, 485, 794, 995, 1148 |
| BpuEI | CTTGAG | 1 cut(s) | 414 |
| BpuMI | CCSGG | 1 cut(s) | 769 |
| BsaHI | GRCGYC | 1 cut(s) | 550 |
| BsaI | GGTCTC | 1 cut(s) | 503 |
| BsaJI | CCNNGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 623, 653, 985, 1015 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 69, 314, 401, 559, 612, 775, 796, 915, 1126 |
| Bse1I | ACTGG | 2 cut(s) | 179, 920 |
| BseBI | CCWGG | 2 cut(s) | 940, 1086 |
| BseDI | CCNNGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| BseGI | GGATG | 3 cut(s) | 391, 586, 985 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 69, 314, 401, 559, 612, 775, 796, 915, 1126 |
| BseMII | CTCAG | 4 cut(s) | 254, 771, 786, 1001 |
| BseNI | ACTGG | 2 cut(s) | 179, 920 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseX3I | CGGCCG | 1 cut(s) | 373 |
| BseXI | GCAGC | 7 cut(s) | 85, 314, 523, 712, 787, 859, 1135 |
| BseYI | CCCAGC | 2 cut(s) | 135, 1109 |
| Bsh1285I | CGRYCG | 1 cut(s) | 376 |
| BshNI | GGYRCC | 4 cut(s) | 163, 233, 549, 1061 |
| BsiEI | CGRYCG | 1 cut(s) | 376 |
| BsiHKCI | CYCGRG | 2 cut(s) | 620, 1154 |
| BsiSI | CCGG | 1 cut(s) | 769 |
| BslFI | GGGAC | 3 cut(s) | 129, 629, 913 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 69, 314, 401, 559, 612, 775, 796, 915, 1126 |
| BsmAI | GTCTC | 2 cut(s) | 503, 512 |
| BsmFI | GGGAC | 3 cut(s) | 129, 629, 913 |
| Bso31I | GGTCTC | 1 cut(s) | 503 |
| BsoBI | CYCGRG | 2 cut(s) | 620, 1154 |
| Bsp1286I | GDGCHC | 3 cut(s) | 168, 430, 1076 |
| Bsp143I | GATC | 3 cut(s) | 673, 1088, 1093 |
| Bsp19I | CCATGG | 1 cut(s) | 576 |
| BspCNI | CTCAG | 4 cut(s) | 253, 772, 787, 1000 |
| BspPI | GGATC | 2 cut(s) | 681, 1096 |
| BspQI | GCTCTTC | 1 cut(s) | 779 |
| BspT107I | GGYRCC | 4 cut(s) | 163, 233, 549, 1061 |
| BspTNI | GGTCTC | 1 cut(s) | 503 |
| BsrBI | CCGCTC | 3 cut(s) | 352, 613, 792 |
| BsrI | ACTGG | 2 cut(s) | 179, 920 |
| BssECI | CCNNGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| BssMI | GATC | 3 cut(s) | 673, 1088, 1093 |
| BssNI | GRCGYC | 1 cut(s) | 550 |
| BssT1I | CCWWGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| Bst2UI | CCWGG | 2 cut(s) | 940, 1086 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 323 |
| Bst6I | CTCTTC | 2 cut(s) | 282, 779 |
| BstACI | GRCGYC | 1 cut(s) | 550 |
| BstC8I | GCNNGC | 4 cut(s) | 350, 586, 593, 843 |
| BstDEI | CTNAG | 4 cut(s) | 240, 780, 795, 987 |
| BstDSI | CCRYGG | 1 cut(s) | 576 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 557 |
| BstF5I | GGATG | 3 cut(s) | 391, 586, 985 |
| BstH2I | RGCGCY | 1 cut(s) | 553 |
| BstHHI | GCGC | 2 cut(s) | 103, 552 |
| BstKTI | GATC | 3 cut(s) | 676, 1091, 1096 |
| BstMAI | GTCTC | 2 cut(s) | 503, 512 |
| BstMBI | GATC | 3 cut(s) | 673, 1088, 1093 |
| BstMCI | CGRYCG | 1 cut(s) | 376 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 98, 202, 208, 217, 689, 872 |
| BstNI | CCWGG | 2 cut(s) | 940, 1086 |
| BstNSI | RCATGY | 1 cut(s) | 892 |
| BstSCI | CCNGG | 3 cut(s) | 767, 938, 1084 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstV1I | GCAGC | 7 cut(s) | 85, 314, 523, 712, 787, 859, 1135 |
| BstX2I | RGATCY | 1 cut(s) | 1088 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 736 |
| BstYI | RGATCY | 1 cut(s) | 1088 |
| BstZI | CGGCCG | 1 cut(s) | 373 |
| BtgI | CCRYGG | 1 cut(s) | 576 |
| BtsCI | GGATG | 3 cut(s) | 391, 586, 985 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 3 cut(s) | 186, 427, 453 |
| Cac8I | GCNNGC | 4 cut(s) | 350, 586, 593, 843 |
| CfoI | GCGC | 2 cut(s) | 103, 552 |
| Cfr13I | GGNCC | 4 cut(s) | 91, 143, 616, 1112 |
| CseI | GACGC | 4 cut(s) | 114, 369, 915, 959 |
| Csp6I | GTAC | 2 cut(s) | 60, 234 |
| CviAII | CATG | 5 cut(s) | 577, 847, 889, 1036, 1066 |
| CviQI | GTAC | 2 cut(s) | 60, 234 |
| DdeI | CTNAG | 4 cut(s) | 240, 780, 795, 987 |
| DinI | GGCGCC | 1 cut(s) | 551 |
| DpnI | GATC | 3 cut(s) | 675, 1090, 1095 |
| DpnII | GATC | 3 cut(s) | 673, 1088, 1093 |
| DraI | TTTAAA | 1 cut(s) | 820 |
| DriI | GACNNNNNGTC | 1 cut(s) | 34 |
| EaeI | YGGCCR | 4 cut(s) | 373, 388, 603, 1038 |
| EagI | CGGCCG | 1 cut(s) | 373 |
| Eam1104I | CTCTTC | 2 cut(s) | 282, 779 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 34 |
| EarI | CTCTTC | 2 cut(s) | 282, 779 |
| EciI | GGCGGA | 1 cut(s) | 118 |
| EclXI | CGGCCG | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco24I | GRGCYC | 2 cut(s) | 430, 1076 |
| Eco31I | GGTCTC | 1 cut(s) | 503 |
| Eco47I | GGWCC | 2 cut(s) | 143, 616 |
| Eco52I | CGGCCG | 1 cut(s) | 373 |
| Eco57I | CTGAAG | 3 cut(s) | 236, 500, 689 |
| Eco88I | CYCGRG | 2 cut(s) | 620, 1154 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 557 |
| EcoO109I | RGGNCCY | 2 cut(s) | 91, 616 |
| EcoRII | CCWGG | 2 cut(s) | 938, 1084 |
| EcoT14I | CCWWGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| EcoT38I | GRGCYC | 2 cut(s) | 430, 1076 |
| EgeI | GGCGCC | 1 cut(s) | 551 |
| EheI | GGCGCC | 1 cut(s) | 551 |
| ErhI | CCWWGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| FaeI | CATG | 5 cut(s) | 580, 850, 892, 1039, 1069 |
| FaqI | GGGAC | 3 cut(s) | 129, 629, 913 |
| FatI | CATG | 5 cut(s) | 576, 846, 888, 1035, 1065 |
| FauI | CCCGC | 4 cut(s) | 74, 184, 606, 943 |
| FbaI | TGATCA | 1 cut(s) | 1093 |
| FokI | GGATG | 3 cut(s) | 378, 593, 992 |
| FriOI | GRGCYC | 2 cut(s) | 430, 1076 |
| FspBI | CTAG | 3 cut(s) | 647, 1052, 1106 |
| GlaI | GCGC | 2 cut(s) | 102, 551 |
| GsaI | CCCAGC | 2 cut(s) | 139, 1113 |
| GsuI | CTGGAG | 5 cut(s) | 218, 485, 794, 995, 1148 |
| HaeII | RGCGCY | 1 cut(s) | 553 |
| HapII | CCGG | 1 cut(s) | 769 |
| HgaI | GACGC | 4 cut(s) | 114, 369, 915, 959 |
| HhaI | GCGC | 2 cut(s) | 103, 552 |
| Hin1I | GRCGYC | 1 cut(s) | 550 |
| Hin1II | CATG | 5 cut(s) | 580, 850, 892, 1039, 1069 |
| Hin6I | GCGC | 2 cut(s) | 101, 550 |
| HinP1I | GCGC | 2 cut(s) | 101, 550 |
| HinfI | GANTC | 6 cut(s) | 360, 572, 706, 719, 983, 994 |
| HpaII | CCGG | 1 cut(s) | 769 |
| HphI | GGTGA | 5 cut(s) | 329, 770, 871, 931, 977 |
| Hpy188I | TCNGA | 7 cut(s) | 28, 255, 385, 796, 1015, 1093, 1098 |
| Hpy188III | TCNNGA | 5 cut(s) | 357, 431, 502, 974, 1154 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 389 |
| HpyAV | CCTTC | 7 cut(s) | 145, 416, 475, 488, 664, 856, 895 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 323 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 1028 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 98, 202, 208, 217, 689, 872 |
| HpyF3I | CTNAG | 4 cut(s) | 240, 780, 795, 987 |
| Hsp92I | GRCGYC | 1 cut(s) | 550 |
| Hsp92II | CATG | 5 cut(s) | 580, 850, 892, 1039, 1069 |
| HspAI | GCGC | 2 cut(s) | 101, 550 |
| KasI | GGCGCC | 1 cut(s) | 549 |
| KpnI | GGTACC | 1 cut(s) | 237 |
| Ksp22I | TGATCA | 1 cut(s) | 1093 |
| Kzo9I | GATC | 3 cut(s) | 673, 1088, 1093 |
| LguI | GCTCTTC | 1 cut(s) | 779 |
| LmnI | GCTCC | 6 cut(s) | 29, 84, 199, 508, 905, 1156 |
| Lsp1109I | GCAGC | 7 cut(s) | 85, 314, 523, 712, 787, 859, 1135 |
| LweI | GCATC | 3 cut(s) | 198, 422, 571 |
| MaeI | CTAG | 3 cut(s) | 647, 1052, 1106 |
| MaeIII | GTNAC | 3 cut(s) | 181, 317, 450 |
| MalI | GATC | 3 cut(s) | 675, 1090, 1095 |
| MbiI | CCGCTC | 3 cut(s) | 352, 613, 792 |
| MboI | GATC | 3 cut(s) | 673, 1088, 1093 |
| MboII | GAAGA | 6 cut(s) | 242, 268, 296, 299, 701, 796 |
| MfeI | CAATTG | 2 cut(s) | 212, 399 |
| MflI | RGATCY | 1 cut(s) | 1088 |
| MhlI | GDGCHC | 3 cut(s) | 168, 430, 1076 |
| MlsI | TGGCCA | 1 cut(s) | 605 |
| MluCI | AATT | 4 cut(s) | 212, 399, 464, 1159 |
| MluNI | TGGCCA | 1 cut(s) | 605 |
| Mly113I | GGCGCC | 1 cut(s) | 550 |
| MlyI | GAGTC | 4 cut(s) | 354, 566, 728, 988 |
| MmeI | TCCRAC | 5 cut(s) | 51, 408, 419, 732, 1038 |
| Mox20I | TGGCCA | 1 cut(s) | 605 |
| MscI | TGGCCA | 1 cut(s) | 605 |
| MseI | TTAA | 1 cut(s) | 819 |
| Msp20I | TGGCCA | 1 cut(s) | 605 |
| MspA1I | CMGCKG | 3 cut(s) | 230, 991, 1126 |
| MspI | CCGG | 1 cut(s) | 769 |
| MspR9I | CCNGG | 3 cut(s) | 769, 940, 1086 |
| MssI | GTTTAAAC | 1 cut(s) | 820 |
| MunI | CAATTG | 2 cut(s) | 212, 399 |
| MvaI | CCWGG | 2 cut(s) | 940, 1086 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 98, 202, 208, 217, 689, 872 |
| NarI | GGCGCC | 1 cut(s) | 550 |
| NciI | CCSGG | 1 cut(s) | 769 |
| NcoI | CCATGG | 1 cut(s) | 576 |
| NdeII | GATC | 3 cut(s) | 673, 1088, 1093 |
| NlaIII | CATG | 5 cut(s) | 580, 850, 892, 1039, 1069 |
| NmeAIII | GCCGAG | 1 cut(s) | 1095 |
| NmuCI | GTSAC | 3 cut(s) | 181, 317, 450 |
| NspI | RCATGY | 1 cut(s) | 892 |
| PaeR7I | CTCGAG | 1 cut(s) | 620 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PciI | ACATGT | 1 cut(s) | 888 |
| PciSI | GCTCTTC | 1 cut(s) | 779 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 36, 627, 1152 |
| PfeI | GAWTC | 2 cut(s) | 706, 983 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 401, 915 |
| PfoI | TCCNGGA | 1 cut(s) | 1084 |
| PleI | GAGTC | 4 cut(s) | 354, 566, 727, 988 |
| PluTI | GGCGCC | 1 cut(s) | 553 |
| PmeI | GTTTAAAC | 1 cut(s) | 820 |
| PpsI | GAGTC | 4 cut(s) | 354, 566, 727, 988 |
| PpuMI | RGGWCCY | 1 cut(s) | 616 |
| PscI | ACATGT | 1 cut(s) | 888 |
| Psp5II | RGGWCCY | 1 cut(s) | 616 |
| Psp6I | CCWGG | 2 cut(s) | 938, 1084 |
| PspFI | CCCAGC | 2 cut(s) | 135, 1109 |
| PspGI | CCWGG | 2 cut(s) | 938, 1084 |
| PspPI | GGNCC | 4 cut(s) | 91, 143, 616, 1112 |
| PspPPI | RGGWCCY | 1 cut(s) | 616 |
| PspXI | VCTCGAGB | 1 cut(s) | 620 |
| PsuI | RGATCY | 1 cut(s) | 1088 |
| RsaI | GTAC | 2 cut(s) | 61, 235 |
| RsaNI | GTAC | 2 cut(s) | 60, 234 |
| SapI | GCTCTTC | 1 cut(s) | 779 |
| SaqAI | TTAA | 1 cut(s) | 819 |
| Sau3AI | GATC | 3 cut(s) | 673, 1088, 1093 |
| Sau96I | GGNCC | 4 cut(s) | 91, 143, 616, 1112 |
| SchI | GAGTC | 4 cut(s) | 354, 566, 728, 988 |
| ScrFI | CCNGG | 3 cut(s) | 769, 940, 1086 |
| SduI | GDGCHC | 3 cut(s) | 168, 430, 1076 |
| SfaNI | GCATC | 3 cut(s) | 198, 422, 571 |
| SfoI | GGCGCC | 1 cut(s) | 551 |
| Sfr274I | CTCGAG | 1 cut(s) | 620 |
| SinI | GGWCC | 2 cut(s) | 143, 616 |
| SlaI | CTCGAG | 1 cut(s) | 620 |
| SmlI | CTYRAG | 2 cut(s) | 429, 620 |
| SmoI | CTYRAG | 2 cut(s) | 429, 620 |
| Sse9I | AATT | 4 cut(s) | 212, 399, 464, 1159 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SspDI | GGCGCC | 1 cut(s) | 549 |
| SspMI | CTAG | 3 cut(s) | 647, 1052, 1106 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 3 cut(s) | 767, 938, 1084 |
| StyI | CCWWGG | 5 cut(s) | 67, 113, 171, 558, 576 |
| TaaI | ACNGT | 2 cut(s) | 32, 323 |
| TaqI | TCGA | 4 cut(s) | 279, 492, 621, 912 |
| TasI | AATT | 4 cut(s) | 212, 399, 464, 1159 |
| TauI | GCSGC | 9 cut(s) | 205, 230, 265, 268, 375, 550, 591, 792, 878 |
| TfiI | GAWTC | 2 cut(s) | 706, 983 |
| Tru1I | TTAA | 1 cut(s) | 819 |
| Tru9I | TTAA | 1 cut(s) | 819 |
| TscAI | CASTG | 3 cut(s) | 186, 427, 453 |
| TseFI | GTSAC | 3 cut(s) | 181, 317, 450 |
| TseI | GCWGC | 7 cut(s) | 98, 327, 511, 725, 800, 872, 1148 |
| Tsp45I | GTSAC | 3 cut(s) | 181, 317, 450 |
| TspDTI | ATGAA | 3 cut(s) | 297, 758, 1024 |
| TspGWI | ACGGA | 1 cut(s) | 28 |
| TspRI | CASTG | 3 cut(s) | 186, 427, 453 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 401, 915 |
| VpaK11BI | GGWCC | 2 cut(s) | 143, 616 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 557 |
| XapI | RAATTY | 1 cut(s) | 464 |
| XceI | RCATGY | 1 cut(s) | 892 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 398 |
| XhoI | CTCGAG | 1 cut(s) | 620 |
| XspI | CTAG | 3 cut(s) | 647, 1052, 1106 |