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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 142 |
| Acc36I | ACCTGC | 1 cut(s) | 1063 |
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccBSI | CCGCTC | 4 cut(s) | 310, 337, 550, 679 |
| AccII | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| AcoI | YGGCCR | 6 cut(s) | 606, 738, 841, 881, 894, 1134 |
| AcuI | CTGAAG | 2 cut(s) | 382, 759 |
| AcyI | GRCGYC | 3 cut(s) | 248, 452, 585 |
| AfaI | GTAC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 102, 615, 732, 903, 1136 |
| AgsI | TTSAA | 1 cut(s) | 1238 |
| AjiI | CACGTC | 1 cut(s) | 640 |
| AjnI | CCWGG | 2 cut(s) | 62, 621 |
| AleI | CACNNNNGTG | 1 cut(s) | 1022 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 299, 331 |
| Alw21I | GWGCWC | 4 cut(s) | 483, 639, 992, 1029 |
| Alw26I | GTCTC | 5 cut(s) | 150, 506, 526, 646, 1081 |
| Alw44I | GTGCAC | 1 cut(s) | 1025 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1183 |
| AoxI | GGCC | 9 cut(s) | 204, 606, 738, 841, 881, 894, 1113, 1134, 1154 |
| ApaLI | GTGCAC | 1 cut(s) | 1025 |
| ApeKI | GCWGC | 7 cut(s) | 460, 667, 670, 715, 934, 937, 1051 |
| AspLEI | GCGC | 9 cut(s) | 118, 132, 250, 289, 372, 667, 802, 807, 1093 |
| AspS9I | GGNCC | 6 cut(s) | 20, 93, 187, 205, 619, 1113 |
| AsuHPI | GGTGA | 3 cut(s) | 773, 848, 848 |
| AvaII | GGWCC | 4 cut(s) | 20, 93, 187, 619 |
| AxyI | CCTNAGG | 1 cut(s) | 1176 |
| BaeGI | GKGCMC | 1 cut(s) | 1029 |
| BalI | TGGCCA | 1 cut(s) | 896 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BanII | GRGCYC | 3 cut(s) | 483, 992, 1190 |
| Bbv12I | GWGCWC | 4 cut(s) | 483, 639, 992, 1029 |
| BbvI | GCAGC | 7 cut(s) | 472, 654, 657, 727, 921, 924, 1063 |
| BccI | CCATC | 4 cut(s) | 333, 617, 730, 833 |
| BceAI | ACGGC | 4 cut(s) | 153, 239, 393, 1149 |
| BciT130I | CCWGG | 2 cut(s) | 64, 623 |
| BcoDI | GTCTC | 5 cut(s) | 150, 506, 526, 646, 1081 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BfmI | CTRYAG | 2 cut(s) | 671, 938 |
| BfoI | RGCGCY | 3 cut(s) | 119, 133, 251 |
| BfuAI | ACCTGC | 1 cut(s) | 1063 |
| Bme1390I | CCNGG | 2 cut(s) | 64, 623 |
| Bme18I | GGWCC | 4 cut(s) | 20, 93, 187, 619 |
| BmgBI | CACGTC | 1 cut(s) | 640 |
| BmgT120I | GGNCC | 6 cut(s) | 20, 93, 187, 205, 619, 1113 |
| BmiI | GGNNCC | 8 cut(s) | 72, 107, 188, 249, 620, 1114, 1170, 1189 |
| BmrFI | CCNGG | 2 cut(s) | 64, 623 |
| BmsI | GCATC | 2 cut(s) | 778, 946 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 626, 658 |
| BpmI | CTGGAG | 2 cut(s) | 488, 644 |
| Bpu10I | CCTNAGC | 1 cut(s) | 482 |
| BsaHI | GRCGYC | 3 cut(s) | 248, 452, 585 |
| BsaI | GGTCTC | 2 cut(s) | 506, 1081 |
| BsaJI | CCNNGG | 4 cut(s) | 63, 464, 589, 1191 |
| BsaWI | WCCGGW | 1 cut(s) | 858 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 156, 186, 299, 329 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 102, 615, 732, 903, 1136 |
| Bse118I | RCCGGY | 3 cut(s) | 40, 883, 1136 |
| Bse1I | ACTGG | 4 cut(s) | 77, 540, 561, 881 |
| Bse21I | CCTNAGG | 1 cut(s) | 1176 |
| BseBI | CCWGG | 2 cut(s) | 64, 623 |
| BseDI | CCNNGG | 4 cut(s) | 63, 464, 589, 1191 |
| BseGI | GGATG | 2 cut(s) | 609, 741 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 102, 615, 732, 903, 1136 |
| BseMII | CTCAG | 3 cut(s) | 132, 496, 1190 |
| BseNI | ACTGG | 4 cut(s) | 77, 540, 561, 881 |
| BseSI | GKGCMC | 1 cut(s) | 1029 |
| BseX3I | CGGCCG | 1 cut(s) | 1134 |
| BseXI | GCAGC | 7 cut(s) | 472, 654, 657, 727, 921, 924, 1063 |
| BseYI | CCCAGC | 4 cut(s) | 101, 340, 754, 769 |
| BsgI | GTGCAG | 1 cut(s) | 734 |
| Bsh1236I | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| Bsh1285I | CGRYCG | 2 cut(s) | 830, 1137 |
| BshFI | GGCC | 9 cut(s) | 206, 608, 740, 843, 883, 896, 1115, 1136, 1156 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiEI | CGRYCG | 2 cut(s) | 830, 1137 |
| BsiHKAI | GWGCWC | 4 cut(s) | 483, 639, 992, 1029 |
| BsiSI | CCGG | 7 cut(s) | 41, 133, 613, 844, 859, 884, 1137 |
| BslFI | GGGAC | 2 cut(s) | 567, 632 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 102, 615, 732, 903, 1136 |
| BsmAI | GTCTC | 5 cut(s) | 150, 506, 526, 646, 1081 |
| BsmBI | CGTCTC | 1 cut(s) | 646 |
| BsmFI | GGGAC | 2 cut(s) | 567, 632 |
| BsnI | GGCC | 9 cut(s) | 206, 608, 740, 843, 883, 896, 1115, 1136, 1156 |
| Bso31I | GGTCTC | 2 cut(s) | 506, 1081 |
| Bsp1286I | GDGCHC | 5 cut(s) | 483, 639, 992, 1029, 1190 |
| Bsp143I | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| BspANI | GGCC | 9 cut(s) | 206, 608, 740, 843, 883, 896, 1115, 1136, 1156 |
| BspCNI | CTCAG | 3 cut(s) | 133, 495, 1189 |
| BspFNI | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| BspHI | TCATGA | 1 cut(s) | 294 |
| BspLI | GGNNCC | 8 cut(s) | 72, 107, 188, 249, 620, 1114, 1170, 1189 |
| BspMAI | CTGCAG | 2 cut(s) | 675, 942 |
| BspMI | ACCTGC | 1 cut(s) | 1063 |
| BspQI | GCTCTTC | 1 cut(s) | 471 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BspTNI | GGTCTC | 2 cut(s) | 506, 1081 |
| BsrBI | CCGCTC | 4 cut(s) | 310, 337, 550, 679 |
| BsrFI | RCCGGY | 3 cut(s) | 40, 883, 1136 |
| BsrI | ACTGG | 4 cut(s) | 77, 540, 561, 881 |
| BssAI | RCCGGY | 3 cut(s) | 40, 883, 1136 |
| BssECI | CCNNGG | 4 cut(s) | 63, 464, 589, 1191 |
| BssMI | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| BssNI | GRCGYC | 3 cut(s) | 248, 452, 585 |
| BssT1I | CCWWGG | 2 cut(s) | 464, 1191 |
| Bst2UI | CCWGG | 2 cut(s) | 64, 623 |
| Bst6I | CTCTTC | 2 cut(s) | 153, 471 |
| BstACI | GRCGYC | 3 cut(s) | 248, 452, 585 |
| BstDEI | CTNAG | 4 cut(s) | 141, 456, 482, 1176 |
| BstDSI | CCRYGG | 1 cut(s) | 589 |
| BstEII | GGTNACC | 1 cut(s) | 854 |
| BstF5I | GGATG | 2 cut(s) | 609, 741 |
| BstFNI | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| BstH2I | RGCGCY | 3 cut(s) | 119, 133, 251 |
| BstHHI | GCGC | 9 cut(s) | 118, 132, 250, 289, 372, 667, 802, 807, 1093 |
| BstKTI | GATC | 4 cut(s) | 265, 663, 830, 1046 |
| BstMAI | GTCTC | 5 cut(s) | 150, 506, 526, 646, 1081 |
| BstMBI | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| BstMCI | CGRYCG | 2 cut(s) | 830, 1137 |
| BstNI | CCWGG | 2 cut(s) | 64, 623 |
| BstPI | GGTNACC | 1 cut(s) | 854 |
| BstSCI | CCNGG | 2 cut(s) | 62, 621 |
| BstSFI | CTRYAG | 2 cut(s) | 671, 938 |
| BstSLI | GKGCMC | 1 cut(s) | 1029 |
| BstUI | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| BstV1I | GCAGC | 7 cut(s) | 472, 654, 657, 727, 921, 924, 1063 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 17 |
| BstZI | CGGCCG | 1 cut(s) | 1134 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1176 |
| BsuRI | GGCC | 9 cut(s) | 206, 608, 740, 843, 883, 896, 1115, 1136, 1156 |
| BtgI | CCRYGG | 1 cut(s) | 589 |
| BtrI | CACGTC | 1 cut(s) | 640 |
| BtsCI | GGATG | 2 cut(s) | 609, 741 |
| BtsIMutI | CAGTG | 1 cut(s) | 265 |
| BveI | ACCTGC | 1 cut(s) | 1063 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1183 |
| CciI | TCATGA | 1 cut(s) | 294 |
| CfoI | GCGC | 9 cut(s) | 118, 132, 250, 289, 372, 667, 802, 807, 1093 |
| Cfr10I | RCCGGY | 3 cut(s) | 40, 883, 1136 |
| Cfr13I | GGNCC | 6 cut(s) | 20, 93, 187, 205, 619, 1113 |
| Cfr42I | CCGCGG | 1 cut(s) | 592 |
| CseI | GACGC | 3 cut(s) | 441, 593, 806 |
| Csp6I | GTAC | 1 cut(s) | 331 |
| CviAII | CATG | 2 cut(s) | 295, 975 |
| CviQI | GTAC | 1 cut(s) | 331 |
| DdeI | CTNAG | 4 cut(s) | 141, 456, 482, 1176 |
| DinI | GGCGCC | 1 cut(s) | 249 |
| DpnI | GATC | 4 cut(s) | 264, 662, 829, 1045 |
| DpnII | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 142 |
| EaeI | YGGCCR | 6 cut(s) | 606, 738, 841, 881, 894, 1134 |
| EagI | CGGCCG | 1 cut(s) | 1134 |
| Eam1104I | CTCTTC | 2 cut(s) | 153, 471 |
| EarI | CTCTTC | 2 cut(s) | 153, 471 |
| EciI | GGCGGA | 7 cut(s) | 59, 179, 533, 554, 581, 715, 1161 |
| Ecl136II | GAGCTC | 2 cut(s) | 481, 990 |
| EclXI | CGGCCG | 1 cut(s) | 1134 |
| Eco130I | CCWWGG | 2 cut(s) | 464, 1191 |
| Eco24I | GRGCYC | 3 cut(s) | 483, 992, 1190 |
| Eco31I | GGTCTC | 2 cut(s) | 506, 1081 |
| Eco47I | GGWCC | 4 cut(s) | 20, 93, 187, 619 |
| Eco52I | CGGCCG | 1 cut(s) | 1134 |
| Eco53kI | GAGCTC | 2 cut(s) | 481, 990 |
| Eco57I | CTGAAG | 2 cut(s) | 382, 759 |
| Eco81I | CCTNAGG | 1 cut(s) | 1176 |
| Eco91I | GGTNACC | 1 cut(s) | 854 |
| EcoICRI | GAGCTC | 2 cut(s) | 481, 990 |
| EcoO109I | RGGNCCY | 1 cut(s) | 619 |
| EcoO65I | GGTNACC | 1 cut(s) | 854 |
| EcoRII | CCWGG | 2 cut(s) | 62, 621 |
| EcoT14I | CCWWGG | 2 cut(s) | 464, 1191 |
| EcoT38I | GRGCYC | 3 cut(s) | 483, 992, 1190 |
| EgeI | GGCGCC | 1 cut(s) | 249 |
| EheI | GGCGCC | 1 cut(s) | 249 |
| ErhI | CCWWGG | 2 cut(s) | 464, 1191 |
| Esp3I | CGTCTC | 1 cut(s) | 646 |
| FaeI | CATG | 2 cut(s) | 298, 978 |
| FaiI | YATR | 8 cut(s) | 285, 296, 365, 440, 579, 710, 976, 983 |
| FaqI | GGGAC | 2 cut(s) | 567, 632 |
| FatI | CATG | 2 cut(s) | 294, 974 |
| FauI | CCCGC | 8 cut(s) | 215, 259, 303, 352, 543, 596, 609, 711 |
| FokI | GGATG | 2 cut(s) | 596, 748 |
| FriOI | GRGCYC | 3 cut(s) | 483, 992, 1190 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GlaI | GCGC | 9 cut(s) | 117, 131, 249, 288, 371, 666, 801, 806, 1092 |
| GsaI | CCCAGC | 4 cut(s) | 105, 344, 758, 773 |
| GsuI | CTGGAG | 2 cut(s) | 488, 644 |
| HaeII | RGCGCY | 3 cut(s) | 119, 133, 251 |
| HaeIII | GGCC | 9 cut(s) | 206, 608, 740, 843, 883, 896, 1115, 1136, 1156 |
| HapII | CCGG | 7 cut(s) | 41, 133, 613, 844, 859, 884, 1137 |
| HgaI | GACGC | 3 cut(s) | 441, 593, 806 |
| HhaI | GCGC | 9 cut(s) | 118, 132, 250, 289, 372, 667, 802, 807, 1093 |
| Hin1I | GRCGYC | 3 cut(s) | 248, 452, 585 |
| Hin1II | CATG | 2 cut(s) | 298, 978 |
| Hin6I | GCGC | 9 cut(s) | 116, 130, 248, 287, 370, 665, 800, 805, 1091 |
| HinP1I | GCGC | 9 cut(s) | 116, 130, 248, 287, 370, 665, 800, 805, 1091 |
| HindIII | AAGCTT | 1 cut(s) | 780 |
| HinfI | GANTC | 5 cut(s) | 143, 269, 722, 1118, 1149 |
| HpaII | CCGG | 7 cut(s) | 41, 133, 613, 844, 859, 884, 1137 |
| HphI | GGTGA | 3 cut(s) | 773, 848, 848 |
| Hpy166II | GTNNAC | 1 cut(s) | 1027 |
| Hpy188I | TCNGA | 7 cut(s) | 497, 778, 787, 871, 1123, 1131, 1261 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 266, 295, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 1027 |
| Hpy99I | CGWCG | 5 cut(s) | 91, 379, 822, 871, 1135 |
| HpyAV | CCTTC | 5 cut(s) | 196, 283, 296, 406, 1232 |
| HpyCH4IV | ACGT | 1 cut(s) | 639 |
| HpyCH4V | TGCA | 6 cut(s) | 673, 715, 918, 940, 1027, 1228 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 456, 482, 1176 |
| HpySE526I | ACGT | 1 cut(s) | 639 |
| Hsp92I | GRCGYC | 3 cut(s) | 248, 452, 585 |
| Hsp92II | CATG | 2 cut(s) | 298, 978 |
| HspAI | GCGC | 9 cut(s) | 116, 130, 248, 287, 370, 665, 800, 805, 1091 |
| KasI | GGCGCC | 1 cut(s) | 247 |
| KroI | GCCGGC | 2 cut(s) | 40, 883 |
| KroNI | GCCGGC | 2 cut(s) | 42, 885 |
| KspI | CCGCGG | 1 cut(s) | 592 |
| Kzo9I | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| LguI | GCTCTTC | 1 cut(s) | 471 |
| LmnI | GCTCC | 8 cut(s) | 105, 220, 307, 652, 676, 931, 987, 1193 |
| Lsp1109I | GCAGC | 7 cut(s) | 472, 654, 657, 727, 921, 924, 1063 |
| LweI | GCATC | 2 cut(s) | 778, 946 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeII | ACGT | 1 cut(s) | 639 |
| MaeIII | GTNAC | 3 cut(s) | 58, 429, 854 |
| MalI | GATC | 4 cut(s) | 264, 662, 829, 1045 |
| MbiI | CCGCTC | 4 cut(s) | 310, 337, 550, 679 |
| MboI | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| MboII | GAAGA | 4 cut(s) | 59, 170, 211, 488 |
| MfeI | CAATTG | 1 cut(s) | 381 |
| MhlI | GDGCHC | 5 cut(s) | 483, 639, 992, 1029, 1190 |
| MlsI | TGGCCA | 1 cut(s) | 896 |
| MluCI | AATT | 1 cut(s) | 381 |
| MluNI | TGGCCA | 1 cut(s) | 896 |
| Mly113I | GGCGCC | 1 cut(s) | 248 |
| MlyI | GAGTC | 3 cut(s) | 152, 263, 731 |
| MmeI | TCCRAC | 3 cut(s) | 630, 849, 1154 |
| Mox20I | TGGCCA | 1 cut(s) | 896 |
| MroNI | GCCGGC | 2 cut(s) | 40, 883 |
| MscI | TGGCCA | 1 cut(s) | 896 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 2 cut(s) | 710, 1022 |
| Msp20I | TGGCCA | 1 cut(s) | 896 |
| MspA1I | CMGCKG | 3 cut(s) | 101, 591, 718 |
| MspI | CCGG | 7 cut(s) | 41, 133, 613, 844, 859, 884, 1137 |
| MspR9I | CCNGG | 2 cut(s) | 64, 623 |
| MteI | GCGCNGCGC | 1 cut(s) | 803 |
| MunI | CAATTG | 1 cut(s) | 381 |
| MvaI | CCWGG | 2 cut(s) | 64, 623 |
| MvnI | CGCG | 5 cut(s) | 370, 591, 665, 802, 807 |
| NaeI | GCCGGC | 2 cut(s) | 42, 885 |
| NarI | GGCGCC | 1 cut(s) | 248 |
| NdeII | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| NgoMIV | GCCGGC | 2 cut(s) | 40, 883 |
| NlaIII | CATG | 2 cut(s) | 298, 978 |
| NlaIV | GGNNCC | 8 cut(s) | 72, 107, 188, 249, 620, 1114, 1170, 1189 |
| NmeAIII | GCCGAG | 5 cut(s) | 304, 383, 940, 973, 1017 |
| NmuCI | GTSAC | 2 cut(s) | 58, 854 |
| OliI | CACNNNNGTG | 1 cut(s) | 1022 |
| PagI | TCATGA | 1 cut(s) | 294 |
| PciSI | GCTCTTC | 1 cut(s) | 471 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1127 |
| PdiI | GCCGGC | 2 cut(s) | 42, 885 |
| PfeI | GAWTC | 2 cut(s) | 1118, 1149 |
| Ple19I | CGATCG | 1 cut(s) | 830 |
| PleI | GAGTC | 3 cut(s) | 151, 263, 730 |
| PluTI | GGCGCC | 1 cut(s) | 251 |
| PpsI | GAGTC | 3 cut(s) | 151, 263, 730 |
| PpuMI | RGGWCCY | 1 cut(s) | 619 |
| Psp124BI | GAGCTC | 2 cut(s) | 483, 992 |
| Psp5II | RGGWCCY | 1 cut(s) | 619 |
| Psp6I | CCWGG | 2 cut(s) | 62, 621 |
| PspEI | GGTNACC | 1 cut(s) | 854 |
| PspFI | CCCAGC | 4 cut(s) | 101, 340, 754, 769 |
| PspGI | CCWGG | 2 cut(s) | 62, 621 |
| PspN4I | GGNNCC | 8 cut(s) | 72, 107, 188, 249, 620, 1114, 1170, 1189 |
| PspPI | GGNCC | 6 cut(s) | 20, 93, 187, 205, 619, 1113 |
| PspPPI | RGGWCCY | 1 cut(s) | 619 |
| PstI | CTGCAG | 2 cut(s) | 675, 942 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1183 |
| PvuI | CGATCG | 1 cut(s) | 830 |
| RsaI | GTAC | 1 cut(s) | 332 |
| RsaNI | GTAC | 1 cut(s) | 331 |
| RseI | CAYNNNNRTG | 2 cut(s) | 710, 1022 |
| SacI | GAGCTC | 2 cut(s) | 483, 992 |
| SacII | CCGCGG | 1 cut(s) | 592 |
| SapI | GCTCTTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| Sau3AI | GATC | 4 cut(s) | 262, 660, 827, 1043 |
| Sau96I | GGNCC | 6 cut(s) | 20, 93, 187, 205, 619, 1113 |
| SchI | GAGTC | 3 cut(s) | 152, 263, 731 |
| ScrFI | CCNGG | 2 cut(s) | 64, 623 |
| SduI | GDGCHC | 5 cut(s) | 483, 639, 992, 1029, 1190 |
| SfaNI | GCATC | 2 cut(s) | 778, 946 |
| SfcI | CTRYAG | 2 cut(s) | 671, 938 |
| SfoI | GGCGCC | 1 cut(s) | 249 |
| Sfr303I | CCGCGG | 1 cut(s) | 592 |
| SgrBI | CCGCGG | 1 cut(s) | 592 |
| SinI | GGWCC | 4 cut(s) | 20, 93, 187, 619 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 710, 1022 |
| Sse9I | AATT | 1 cut(s) | 381 |
| SspDI | GGCGCC | 1 cut(s) | 247 |
| SspMI | CTAG | 1 cut(s) | 119 |
| SstI | GAGCTC | 2 cut(s) | 483, 992 |
| StyD4I | CCNGG | 2 cut(s) | 62, 621 |
| StyI | CCWWGG | 2 cut(s) | 464, 1191 |
| TaiI | ACGT | 1 cut(s) | 642 |
| TaqI | TCGA | 4 cut(s) | 546, 1004, 1046, 1207 |
| TasI | AATT | 1 cut(s) | 381 |
| TauI | GCSGC | 9 cut(s) | 101, 233, 340, 452, 594, 608, 689, 754, 805 |
| TfiI | GAWTC | 2 cut(s) | 1118, 1149 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TscAI | CASTG | 1 cut(s) | 265 |
| TseFI | GTSAC | 2 cut(s) | 58, 854 |
| TseI | GCWGC | 7 cut(s) | 460, 667, 670, 715, 934, 937, 1051 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 854 |
| TspDTI | ATGAA | 2 cut(s) | 283, 761 |
| TspRI | CASTG | 1 cut(s) | 265 |
| VneI | GTGCAC | 1 cut(s) | 1025 |
| VpaK11BI | GGWCC | 4 cut(s) | 20, 93, 187, 619 |
| XspI | CTAG | 1 cut(s) | 119 |