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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 181 |
| AccBSI | CCGCTC | 1 cut(s) | 28 |
| AccII | CGCG | 1 cut(s) | 247 |
| AciI | CCGC | 5 cut(s) | 28, 245, 247, 292, 319 |
| AclWI | GGATC | 1 cut(s) | 340 |
| AcuI | CTGAAG | 2 cut(s) | 276, 303 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 181, 318 |
| AhlI | ACTAGT | 1 cut(s) | 346 |
| AjiI | CACGTC | 1 cut(s) | 100 |
| AjnI | CCWGG | 1 cut(s) | 15 |
| AlwI | GGATC | 1 cut(s) | 340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| AoxI | GGCC | 2 cut(s) | 144, 357 |
| ApeKI | GCWGC | 2 cut(s) | 103, 277 |
| AspS9I | GGNCC | 3 cut(s) | 249, 263, 321 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaII | GGWCC | 3 cut(s) | 249, 263, 321 |
| BbvI | GCAGC | 2 cut(s) | 115, 289 |
| BccI | CCATC | 2 cut(s) | 70, 320 |
| BceAI | ACGGC | 1 cut(s) | 372 |
| BciT130I | CCWGG | 1 cut(s) | 17 |
| BcuI | ACTAGT | 1 cut(s) | 346 |
| BfaI | CTAG | 1 cut(s) | 347 |
| BisI | GCNGC | 3 cut(s) | 29, 104, 278 |
| BlsI | GCNGC | 3 cut(s) | 30, 105, 279 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| Bme18I | GGWCC | 3 cut(s) | 249, 263, 321 |
| BmgBI | CACGTC | 1 cut(s) | 100 |
| BmgT120I | GGNCC | 3 cut(s) | 249, 263, 321 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 3 cut(s) | 52, 175, 213 |
| BsaJI | CCNNGG | 3 cut(s) | 39, 189, 245 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 181, 318 |
| Bse118I | RCCGGY | 2 cut(s) | 146, 323 |
| Bse1I | ACTGG | 1 cut(s) | 186 |
| BseBI | CCWGG | 1 cut(s) | 17 |
| BseDI | CCNNGG | 3 cut(s) | 39, 189, 245 |
| BseGI | GGATG | 4 cut(s) | 67, 85, 190, 312 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 181, 318 |
| BseMII | CTCAG | 2 cut(s) | 219, 350 |
| BseNI | ACTGG | 1 cut(s) | 186 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 2 cut(s) | 115, 289 |
| BsgI | GTGCAG | 1 cut(s) | 122 |
| Bsh1236I | CGCG | 1 cut(s) | 247 |
| BshFI | GGCC | 2 cut(s) | 146, 359 |
| BsiSI | CCGG | 2 cut(s) | 147, 324 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 181, 318 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsnI | GGCC | 2 cut(s) | 146, 359 |
| Bsp143I | GATC | 1 cut(s) | 332 |
| BspACI | CCGC | 5 cut(s) | 28, 245, 247, 292, 319 |
| BspANI | GGCC | 2 cut(s) | 146, 359 |
| BspCNI | CTCAG | 2 cut(s) | 218, 349 |
| BspFNI | CGCG | 1 cut(s) | 247 |
| BspPI | GGATC | 1 cut(s) | 340 |
| BsrBI | CCGCTC | 1 cut(s) | 28 |
| BsrFI | RCCGGY | 2 cut(s) | 146, 323 |
| BsrI | ACTGG | 1 cut(s) | 186 |
| BssAI | RCCGGY | 2 cut(s) | 146, 323 |
| BssECI | CCNNGG | 3 cut(s) | 39, 189, 245 |
| BssMI | GATC | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 2 cut(s) | 39, 189 |
| Bst2UI | CCWGG | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 3 cut(s) | 148, 228, 290 |
| BstDEI | CTNAG | 3 cut(s) | 55, 205, 336 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 4 cut(s) | 67, 85, 190, 312 |
| BstFNI | CGCG | 1 cut(s) | 247 |
| BstKTI | GATC | 1 cut(s) | 335 |
| BstMBI | GATC | 1 cut(s) | 332 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 365 |
| BstNI | CCWGG | 1 cut(s) | 17 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BstUI | CGCG | 1 cut(s) | 247 |
| BstV1I | GCAGC | 2 cut(s) | 115, 289 |
| BstX2I | RGATCY | 1 cut(s) | 332 |
| BstYI | RGATCY | 1 cut(s) | 332 |
| BsuRI | GGCC | 2 cut(s) | 146, 359 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| BtgZI | GCGATG | 1 cut(s) | 318 |
| BtrI | CACGTC | 1 cut(s) | 100 |
| BtsCI | GGATG | 4 cut(s) | 67, 85, 190, 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 3 cut(s) | 148, 228, 290 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 2 cut(s) | 146, 323 |
| Cfr13I | GGNCC | 3 cut(s) | 249, 263, 321 |
| Cfr42I | CCGCGG | 1 cut(s) | 248 |
| CpoI | CGGWCCG | 1 cut(s) | 321 |
| CseI | GACGC | 1 cut(s) | 374 |
| CspI | CGGWCCG | 1 cut(s) | 321 |
| CviAII | CATG | 2 cut(s) | 374, 385 |
| CviJI | RGCY | 3 cut(s) | 146, 280, 359 |
| CviKI_1 | RGCY | 3 cut(s) | 146, 280, 359 |
| DdeI | CTNAG | 3 cut(s) | 55, 205, 336 |
| DpnI | GATC | 1 cut(s) | 334 |
| DpnII | GATC | 1 cut(s) | 332 |
| Eco130I | CCWWGG | 2 cut(s) | 39, 189 |
| Eco32I | GATATC | 1 cut(s) | 157 |
| Eco47I | GGWCC | 3 cut(s) | 249, 263, 321 |
| Eco57I | CTGAAG | 2 cut(s) | 276, 303 |
| EcoRII | CCWGG | 1 cut(s) | 15 |
| EcoRV | GATATC | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 2 cut(s) | 39, 189 |
| ErhI | CCWWGG | 2 cut(s) | 39, 189 |
| FaeI | CATG | 2 cut(s) | 377, 388 |
| FaiI | YATR | 5 cut(s) | 108, 126, 152, 375, 386 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FatI | CATG | 2 cut(s) | 373, 384 |
| Fnu4HI | GCNGC | 3 cut(s) | 29, 104, 278 |
| FokI | GGATG | 4 cut(s) | 74, 92, 197, 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 29, 104, 278 |
| FspBI | CTAG | 1 cut(s) | 347 |
| GluI | GCNGC | 3 cut(s) | 29, 104, 278 |
| HaeIII | GGCC | 2 cut(s) | 146, 359 |
| HapII | CCGG | 2 cut(s) | 147, 324 |
| HgaI | GACGC | 1 cut(s) | 374 |
| Hin1II | CATG | 2 cut(s) | 377, 388 |
| HincII | GTYRAC | 1 cut(s) | 138 |
| HindII | GTYRAC | 1 cut(s) | 138 |
| HinfI | GANTC | 5 cut(s) | 12, 238, 269, 308, 381 |
| HpaII | CCGG | 2 cut(s) | 147, 324 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 138 |
| Hpy188I | TCNGA | 3 cut(s) | 208, 339, 364 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 175, 266, 297 |
| Hpy8I | GTNNAC | 1 cut(s) | 138 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 368 |
| HpyAV | CCTTC | 2 cut(s) | 251, 278 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 103, 226 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 365 |
| HpyF3I | CTNAG | 3 cut(s) | 55, 205, 336 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Hsp92II | CATG | 2 cut(s) | 377, 388 |
| KroI | GCCGGC | 1 cut(s) | 146 |
| KroNI | GCCGGC | 1 cut(s) | 148 |
| KspI | CCGCGG | 1 cut(s) | 248 |
| Kzo9I | GATC | 1 cut(s) | 332 |
| Lsp1109I | GCAGC | 2 cut(s) | 115, 289 |
| LweI | GCATC | 3 cut(s) | 52, 175, 213 |
| MaeI | CTAG | 1 cut(s) | 347 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MalI | GATC | 1 cut(s) | 334 |
| MbiI | CCGCTC | 1 cut(s) | 28 |
| MboI | GATC | 1 cut(s) | 332 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MflI | RGATCY | 1 cut(s) | 332 |
| MlyI | GAGTC | 4 cut(s) | 6, 263, 317, 375 |
| MmeI | TCCRAC | 2 cut(s) | 30, 387 |
| MnlI | CCTC | 2 cut(s) | 124, 370 |
| MroNI | GCCGGC | 1 cut(s) | 146 |
| MseI | TTAA | 1 cut(s) | 201 |
| MspA1I | CMGCKG | 2 cut(s) | 247, 319 |
| MspI | CCGG | 2 cut(s) | 147, 324 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| MvaI | CCWGG | 1 cut(s) | 17 |
| MvnI | CGCG | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 365 |
| NaeI | GCCGGC | 1 cut(s) | 148 |
| NdeII | GATC | 1 cut(s) | 332 |
| NgoMIV | GCCGGC | 1 cut(s) | 146 |
| NlaIII | CATG | 2 cut(s) | 377, 388 |
| PdiI | GCCGGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 181 |
| PfoI | TCCNGGA | 1 cut(s) | 15 |
| PkrI | GCNGC | 3 cut(s) | 30, 105, 279 |
| PleI | GAGTC | 4 cut(s) | 6, 263, 316, 375 |
| PpsI | GAGTC | 4 cut(s) | 6, 263, 316, 375 |
| Psp6I | CCWGG | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 15 |
| PspPI | GGNCC | 3 cut(s) | 249, 263, 321 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| PsuI | RGATCY | 1 cut(s) | 332 |
| Rsr2I | CGGWCCG | 1 cut(s) | 321 |
| RsrII | CGGWCCG | 1 cut(s) | 321 |
| SacII | CCGCGG | 1 cut(s) | 248 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 3 cut(s) | 29, 104, 278 |
| Sau3AI | GATC | 1 cut(s) | 332 |
| Sau96I | GGNCC | 3 cut(s) | 249, 263, 321 |
| SchI | GAGTC | 4 cut(s) | 6, 263, 317, 375 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SetI | ASST | 3 cut(s) | 45, 102, 262 |
| SfaNI | GCATC | 3 cut(s) | 52, 175, 213 |
| Sfr303I | CCGCGG | 1 cut(s) | 248 |
| SgrBI | CCGCGG | 1 cut(s) | 248 |
| SinI | GGWCC | 3 cut(s) | 249, 263, 321 |
| SpeI | ACTAGT | 1 cut(s) | 346 |
| SsiI | CCGC | 5 cut(s) | 28, 245, 247, 292, 319 |
| SspMI | CTAG | 1 cut(s) | 347 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| StyI | CCWWGG | 2 cut(s) | 39, 189 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TseI | GCWGC | 2 cut(s) | 103, 277 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 259 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 181 |
| VpaK11BI | GGWCC | 3 cut(s) | 249, 263, 321 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 46 |
| XspI | CTAG | 1 cut(s) | 347 |