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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 45 |
| AccB1I | GGYRCC | 4 cut(s) | 459, 657, 1013, 1103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1023 |
| AccBSI | CCGCTC | 2 cut(s) | 186, 721 |
| AccII | CGCG | 3 cut(s) | 132, 159, 383 |
| AclWI | GGATC | 2 cut(s) | 789, 808 |
| AcuI | CTGAAG | 3 cut(s) | 544, 803, 1022 |
| AcyI | GRCGYC | 2 cut(s) | 658, 1014 |
| AfaI | GTAC | 3 cut(s) | 191, 229, 1171 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 277, 433, 493, 553, 667, 720, 778, 823, 1023 |
| AflII | CTTAAG | 1 cut(s) | 728 |
| AgsI | TTSAA | 1 cut(s) | 778 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 161, 193 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 467, 499 |
| AluBI | AGCT | 5 cut(s) | 70, 619, 640, 683, 703 |
| AluI | AGCT | 5 cut(s) | 70, 619, 640, 683, 703 |
| Alw21I | GWGCWC | 1 cut(s) | 263 |
| Alw26I | GTCTC | 1 cut(s) | 380 |
| AlwI | GGATC | 2 cut(s) | 789, 808 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 445 |
| Ama87I | CYCGRG | 3 cut(s) | 240, 284, 503 |
| AoxI | GGCC | 5 cut(s) | 279, 396, 423, 555, 567 |
| ApaI | GGGCCC | 2 cut(s) | 283, 400 |
| ApeKI | GCWGC | 7 cut(s) | 210, 234, 445, 619, 640, 833, 980 |
| AspLEI | GCGC | 3 cut(s) | 161, 660, 1016 |
| AspS9I | GGNCC | 8 cut(s) | 154, 279, 280, 396, 397, 424, 525, 724 |
| AsuHPI | GGTGA | 3 cut(s) | 260, 862, 1039 |
| AvaI | CYCGRG | 3 cut(s) | 240, 284, 503 |
| AvaII | GGWCC | 3 cut(s) | 154, 525, 724 |
| AxyI | CCTNAGG | 1 cut(s) | 215 |
| BaeGI | GKGCMC | 4 cut(s) | 283, 400, 534, 1108 |
| BanI | GGYRCC | 4 cut(s) | 459, 657, 1013, 1103 |
| BanII | GRGCYC | 3 cut(s) | 283, 400, 594 |
| BbsI | GAAGAC | 2 cut(s) | 381, 632 |
| Bbv12I | GWGCWC | 1 cut(s) | 263 |
| BbvI | GCAGC | 7 cut(s) | 197, 221, 432, 606, 627, 845, 967 |
| BccI | CCATC | 4 cut(s) | 398, 515, 952, 1025 |
| BceAI | ACGGC | 2 cut(s) | 555, 712 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 122, 156, 601, 635 |
| BclI | TGATCA | 1 cut(s) | 79 |
| BcoDI | GTCTC | 1 cut(s) | 380 |
| BfaI | CTAG | 2 cut(s) | 881, 975 |
| BfmI | CTRYAG | 3 cut(s) | 620, 831, 843 |
| BfoI | RGCGCY | 2 cut(s) | 661, 1017 |
| BfrI | CTTAAG | 1 cut(s) | 728 |
| BfuAI | ACCTGC | 1 cut(s) | 45 |
| Bme18I | GGWCC | 3 cut(s) | 154, 525, 724 |
| BmeT110I | CYCGRG | 3 cut(s) | 240, 284, 503 |
| BmgT120I | GGNCC | 8 cut(s) | 154, 279, 280, 396, 397, 424, 525, 724 |
| BmrI | ACTGGG | 1 cut(s) | 1033 |
| BmsI | GCATC | 2 cut(s) | 586, 679 |
| BmuI | ACTGGG | 1 cut(s) | 1033 |
| BoxI | GACNNNNGTC | 1 cut(s) | 542 |
| BpiI | GAAGAC | 2 cut(s) | 381, 632 |
| BpmI | CTGGAG | 2 cut(s) | 776, 881 |
| Bpu10I | CCTNAGC | 2 cut(s) | 795, 1111 |
| BsaHI | GRCGYC | 2 cut(s) | 658, 1014 |
| BsaI | GGTCTC | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 4 cut(s) | 275, 285, 351, 666 |
| BsaWI | WCCGGW | 1 cut(s) | 326 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 173, 203, 467, 497, 731, 761 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 277, 433, 493, 553, 667, 720, 778, 823, 1023 |
| Bse118I | RCCGGY | 1 cut(s) | 462 |
| Bse1I | ACTGG | 3 cut(s) | 197, 759, 1028 |
| Bse21I | CCTNAGG | 1 cut(s) | 215 |
| BseDI | CCNNGG | 4 cut(s) | 275, 285, 351, 666 |
| BseGI | GGATG | 3 cut(s) | 526, 694, 1034 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 277, 433, 493, 553, 667, 720, 778, 823, 1023 |
| BseMII | CTCAG | 4 cut(s) | 206, 284, 879, 1166 |
| BseNI | ACTGG | 3 cut(s) | 197, 759, 1028 |
| BseRI | GAGGAG | 1 cut(s) | 383 |
| BseSI | GKGCMC | 4 cut(s) | 283, 400, 534, 1108 |
| BseXI | GCAGC | 7 cut(s) | 197, 221, 432, 606, 627, 845, 967 |
| Bsh1236I | CGCG | 3 cut(s) | 132, 159, 383 |
| BshFI | GGCC | 5 cut(s) | 281, 398, 425, 557, 569 |
| BshNI | GGYRCC | 4 cut(s) | 459, 657, 1013, 1103 |
| BsiHKAI | GWGCWC | 1 cut(s) | 263 |
| BsiHKCI | CYCGRG | 3 cut(s) | 240, 284, 503 |
| BsiSI | CCGG | 3 cut(s) | 327, 463, 1064 |
| BslFI | GGGAC | 4 cut(s) | 303, 450, 538, 737 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 277, 433, 493, 553, 667, 720, 778, 823, 1023 |
| BsmAI | GTCTC | 1 cut(s) | 380 |
| BsmFI | GGGAC | 4 cut(s) | 303, 450, 538, 737 |
| BsmI | GAATGC | 1 cut(s) | 680 |
| BsnI | GGCC | 5 cut(s) | 281, 398, 425, 557, 569 |
| Bso31I | GGTCTC | 1 cut(s) | 380 |
| BsoBI | CYCGRG | 3 cut(s) | 240, 284, 503 |
| Bsp120I | GGGCCC | 2 cut(s) | 279, 396 |
| Bsp1286I | GDGCHC | 6 cut(s) | 263, 283, 400, 534, 594, 1108 |
| Bsp143I | GATC | 4 cut(s) | 43, 79, 781, 813 |
| BspANI | GGCC | 5 cut(s) | 281, 398, 425, 557, 569 |
| BspCNI | CTCAG | 4 cut(s) | 207, 285, 880, 1165 |
| BspFNI | CGCG | 3 cut(s) | 132, 159, 383 |
| BspMAI | CTGCAG | 2 cut(s) | 624, 835 |
| BspMI | ACCTGC | 1 cut(s) | 45 |
| BspPI | GGATC | 2 cut(s) | 789, 808 |
| BspQI | GCTCTTC | 1 cut(s) | 887 |
| BspT107I | GGYRCC | 4 cut(s) | 459, 657, 1013, 1103 |
| BspTI | CTTAAG | 1 cut(s) | 728 |
| BspTNI | GGTCTC | 1 cut(s) | 380 |
| BsrBI | CCGCTC | 2 cut(s) | 186, 721 |
| BsrFI | RCCGGY | 1 cut(s) | 462 |
| BsrI | ACTGG | 3 cut(s) | 197, 759, 1028 |
| BssAI | RCCGGY | 1 cut(s) | 462 |
| BssECI | CCNNGG | 4 cut(s) | 275, 285, 351, 666 |
| BssMI | GATC | 4 cut(s) | 43, 79, 781, 813 |
| BssNI | GRCGYC | 2 cut(s) | 658, 1014 |
| BssT1I | CCWWGG | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 4 cut(s) | 87, 441, 529, 552 |
| Bst6I | CTCTTC | 2 cut(s) | 848, 887 |
| BstACI | GRCGYC | 2 cut(s) | 658, 1014 |
| BstAFI | CTTAAG | 1 cut(s) | 728 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 202 |
| BstDEI | CTNAG | 7 cut(s) | 215, 293, 795, 801, 888, 1111, 1152 |
| BstDSI | CCRYGG | 1 cut(s) | 275 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 665, 776, 821 |
| BstF5I | GGATG | 3 cut(s) | 526, 694, 1034 |
| BstFNI | CGCG | 3 cut(s) | 132, 159, 383 |
| BstH2I | RGCGCY | 2 cut(s) | 661, 1017 |
| BstHHI | GCGC | 3 cut(s) | 161, 660, 1016 |
| BstKTI | GATC | 4 cut(s) | 46, 82, 784, 816 |
| BstMAI | GTCTC | 1 cut(s) | 380 |
| BstMBI | GATC | 4 cut(s) | 43, 79, 781, 813 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 202, 347, 422, 689, 797, 971, 980, 1103 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 542 |
| BstSFI | CTRYAG | 3 cut(s) | 620, 831, 843 |
| BstSLI | GKGCMC | 4 cut(s) | 283, 400, 534, 1108 |
| BstUI | CGCG | 3 cut(s) | 132, 159, 383 |
| BstV1I | GCAGC | 7 cut(s) | 197, 221, 432, 606, 627, 845, 967 |
| BstV2I | GAAGAC | 2 cut(s) | 381, 632 |
| BstX2I | RGATCY | 1 cut(s) | 813 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 151, 1046 |
| BstYI | RGATCY | 1 cut(s) | 813 |
| Bsu36I | CCTNAGG | 1 cut(s) | 215 |
| BsuRI | GGCC | 5 cut(s) | 281, 398, 425, 557, 569 |
| BtgI | CCRYGG | 1 cut(s) | 275 |
| BtsCI | GGATG | 3 cut(s) | 526, 694, 1034 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| BveI | ACCTGC | 1 cut(s) | 45 |
| CaiI | CAGNNNCTG | 1 cut(s) | 445 |
| CfoI | GCGC | 3 cut(s) | 161, 660, 1016 |
| Cfr10I | RCCGGY | 1 cut(s) | 462 |
| Cfr13I | GGNCC | 8 cut(s) | 154, 279, 280, 396, 397, 424, 525, 724 |
| CseI | GACGC | 2 cut(s) | 389, 1124 |
| Csp6I | GTAC | 3 cut(s) | 190, 228, 1170 |
| CviAII | CATG | 3 cut(s) | 151, 596, 955 |
| CviQI | GTAC | 3 cut(s) | 190, 228, 1170 |
| DdeI | CTNAG | 7 cut(s) | 215, 293, 795, 801, 888, 1111, 1152 |
| DinI | GGCGCC | 2 cut(s) | 659, 1015 |
| DpnI | GATC | 4 cut(s) | 45, 81, 783, 815 |
| DpnII | GATC | 4 cut(s) | 43, 79, 781, 813 |
| DraI | TTTAAA | 1 cut(s) | 928 |
| Eam1104I | CTCTTC | 2 cut(s) | 848, 887 |
| EarI | CTCTTC | 2 cut(s) | 848, 887 |
| EciI | GGCGGA | 2 cut(s) | 686, 1157 |
| Eco130I | CCWWGG | 1 cut(s) | 666 |
| Eco24I | GRGCYC | 3 cut(s) | 283, 400, 594 |
| Eco31I | GGTCTC | 1 cut(s) | 380 |
| Eco47I | GGWCC | 3 cut(s) | 154, 525, 724 |
| Eco57I | CTGAAG | 3 cut(s) | 544, 803, 1022 |
| Eco81I | CCTNAGG | 1 cut(s) | 215 |
| Eco88I | CYCGRG | 3 cut(s) | 240, 284, 503 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 665, 776, 821 |
| EcoO109I | RGGNCCY | 3 cut(s) | 280, 396, 724 |
| EcoT14I | CCWWGG | 1 cut(s) | 666 |
| EcoT38I | GRGCYC | 3 cut(s) | 283, 400, 594 |
| EgeI | GGCGCC | 2 cut(s) | 659, 1015 |
| EheI | GGCGCC | 2 cut(s) | 659, 1015 |
| ErhI | CCWWGG | 1 cut(s) | 666 |
| FaeI | CATG | 3 cut(s) | 154, 599, 958 |
| FaiI | YATR | 8 cut(s) | 152, 597, 686, 767, 903, 945, 956, 998 |
| FaqI | GGGAC | 4 cut(s) | 303, 450, 538, 737 |
| FatI | CATG | 3 cut(s) | 150, 595, 954 |
| FauI | CCCGC | 6 cut(s) | 179, 434, 465, 714, 1066, 1115 |
| FbaI | TGATCA | 1 cut(s) | 79 |
| FokI | GGATG | 3 cut(s) | 533, 701, 1021 |
| FriOI | GRGCYC | 3 cut(s) | 283, 400, 594 |
| FspBI | CTAG | 2 cut(s) | 881, 975 |
| GlaI | GCGC | 3 cut(s) | 160, 659, 1015 |
| GsuI | CTGGAG | 2 cut(s) | 776, 881 |
| HaeII | RGCGCY | 2 cut(s) | 661, 1017 |
| HaeIII | GGCC | 5 cut(s) | 281, 398, 425, 557, 569 |
| HapII | CCGG | 3 cut(s) | 327, 463, 1064 |
| HgaI | GACGC | 2 cut(s) | 389, 1124 |
| HhaI | GCGC | 3 cut(s) | 161, 660, 1016 |
| Hin1I | GRCGYC | 2 cut(s) | 658, 1014 |
| Hin1II | CATG | 3 cut(s) | 154, 599, 958 |
| Hin6I | GCGC | 3 cut(s) | 159, 658, 1014 |
| HinP1I | GCGC | 3 cut(s) | 159, 658, 1014 |
| HincII | GTYRAC | 1 cut(s) | 90 |
| HindII | GTYRAC | 1 cut(s) | 90 |
| HinfI | GANTC | 6 cut(s) | 28, 91, 104, 827, 1148, 1159 |
| HpaII | CCGG | 3 cut(s) | 327, 463, 1064 |
| HphI | GGTGA | 3 cut(s) | 260, 862, 1039 |
| Hpy166II | GTNNAC | 1 cut(s) | 90 |
| Hpy188I | TCNGA | 1 cut(s) | 1180 |
| Hpy188III | TCNNGA | 2 cut(s) | 240, 992 |
| Hpy8I | GTNNAC | 1 cut(s) | 90 |
| Hpy99I | CGWCG | 3 cut(s) | 137, 383, 541 |
| HpyCH4III | ACNGT | 4 cut(s) | 87, 441, 529, 552 |
| HpyCH4V | TGCA | 2 cut(s) | 622, 833 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 202, 347, 422, 689, 797, 971, 980, 1103 |
| HpyF3I | CTNAG | 7 cut(s) | 215, 293, 795, 801, 888, 1111, 1152 |
| Hsp92I | GRCGYC | 2 cut(s) | 658, 1014 |
| Hsp92II | CATG | 3 cut(s) | 154, 599, 958 |
| HspAI | GCGC | 3 cut(s) | 159, 658, 1014 |
| KasI | GGCGCC | 2 cut(s) | 657, 1013 |
| KroI | GCCGGC | 1 cut(s) | 462 |
| KroNI | GCCGGC | 1 cut(s) | 464 |
| Ksp22I | TGATCA | 1 cut(s) | 79 |
| Kzo9I | GATC | 4 cut(s) | 43, 79, 781, 813 |
| LguI | GCTCTTC | 1 cut(s) | 887 |
| LmnI | GCTCC | 8 cut(s) | 67, 220, 242, 335, 597, 616, 757, 1066 |
| Lsp1109I | GCAGC | 7 cut(s) | 197, 221, 432, 606, 627, 845, 967 |
| LweI | GCATC | 2 cut(s) | 586, 679 |
| MaeI | CTAG | 2 cut(s) | 881, 975 |
| MaeIII | GTNAC | 2 cut(s) | 32, 116 |
| MalI | GATC | 4 cut(s) | 45, 81, 783, 815 |
| MbiI | CCGCTC | 2 cut(s) | 186, 721 |
| MboI | GATC | 4 cut(s) | 43, 79, 781, 813 |
| MboII | GAAGA | 5 cut(s) | 44, 386, 637, 865, 904 |
| MflI | RGATCY | 1 cut(s) | 813 |
| MhlI | GDGCHC | 6 cut(s) | 263, 283, 400, 534, 594, 1108 |
| MluCI | AATT | 2 cut(s) | 172, 599 |
| Mly113I | GGCGCC | 2 cut(s) | 658, 1014 |
| MlyI | GAGTC | 3 cut(s) | 85, 821, 1153 |
| MmeI | TCCRAC | 1 cut(s) | 571 |
| MroNI | GCCGGC | 1 cut(s) | 462 |
| MseI | TTAA | 2 cut(s) | 729, 927 |
| MspA1I | CMGCKG | 1 cut(s) | 1156 |
| MspCI | CTTAAG | 1 cut(s) | 728 |
| MspI | CCGG | 3 cut(s) | 327, 463, 1064 |
| MssI | GTTTAAAC | 1 cut(s) | 928 |
| Mva1269I | GAATGC | 1 cut(s) | 680 |
| MvnI | CGCG | 3 cut(s) | 132, 159, 383 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 202, 347, 422, 689, 797, 971, 980, 1103 |
| NaeI | GCCGGC | 1 cut(s) | 464 |
| NarI | GGCGCC | 2 cut(s) | 658, 1014 |
| NdeII | GATC | 4 cut(s) | 43, 79, 781, 813 |
| NgoMIV | GCCGGC | 1 cut(s) | 462 |
| NlaIII | CATG | 3 cut(s) | 154, 599, 958 |
| NmeAIII | GCCGAG | 1 cut(s) | 376 |
| PaeR7I | CTCGAG | 1 cut(s) | 503 |
| PciSI | GCTCTTC | 1 cut(s) | 887 |
| PctI | GAATGC | 1 cut(s) | 680 |
| PdiI | GCCGGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 3 cut(s) | 28, 104, 1148 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1023 |
| PleI | GAGTC | 3 cut(s) | 85, 821, 1153 |
| PluTI | GGCGCC | 2 cut(s) | 661, 1017 |
| PmeI | GTTTAAAC | 1 cut(s) | 928 |
| PpsI | GAGTC | 3 cut(s) | 85, 821, 1153 |
| PpuMI | RGGWCCY | 1 cut(s) | 724 |
| PshAI | GACNNNNGTC | 1 cut(s) | 542 |
| Psp5II | RGGWCCY | 1 cut(s) | 724 |
| PspOMI | GGGCCC | 2 cut(s) | 279, 396 |
| PspPI | GGNCC | 8 cut(s) | 154, 279, 280, 396, 397, 424, 525, 724 |
| PspPPI | RGGWCCY | 1 cut(s) | 724 |
| PspXI | VCTCGAGB | 1 cut(s) | 503 |
| PstI | CTGCAG | 2 cut(s) | 624, 835 |
| PstNI | CAGNNNCTG | 1 cut(s) | 445 |
| PsuI | RGATCY | 1 cut(s) | 813 |
| RsaI | GTAC | 3 cut(s) | 191, 229, 1171 |
| RsaNI | GTAC | 3 cut(s) | 190, 228, 1170 |
| SapI | GCTCTTC | 1 cut(s) | 887 |
| SaqAI | TTAA | 2 cut(s) | 729, 927 |
| Sau3AI | GATC | 4 cut(s) | 43, 79, 781, 813 |
| Sau96I | GGNCC | 8 cut(s) | 154, 279, 280, 396, 397, 424, 525, 724 |
| SchI | GAGTC | 3 cut(s) | 85, 821, 1153 |
| SduI | GDGCHC | 6 cut(s) | 263, 283, 400, 534, 594, 1108 |
| SfaNI | GCATC | 2 cut(s) | 586, 679 |
| SfcI | CTRYAG | 3 cut(s) | 620, 831, 843 |
| SfoI | GGCGCC | 2 cut(s) | 659, 1015 |
| Sfr274I | CTCGAG | 1 cut(s) | 503 |
| SinI | GGWCC | 3 cut(s) | 154, 525, 724 |
| SlaI | CTCGAG | 1 cut(s) | 503 |
| SmlI | CTYRAG | 2 cut(s) | 503, 728 |
| SmoI | CTYRAG | 2 cut(s) | 503, 728 |
| Sse9I | AATT | 2 cut(s) | 172, 599 |
| SspDI | GGCGCC | 2 cut(s) | 657, 1013 |
| SspMI | CTAG | 2 cut(s) | 881, 975 |
| StyI | CCWWGG | 1 cut(s) | 666 |
| TaaI | ACNGT | 4 cut(s) | 87, 441, 529, 552 |
| TaqI | TCGA | 2 cut(s) | 504, 1020 |
| TasI | AATT | 2 cut(s) | 172, 599 |
| TauI | GCSGC | 5 cut(s) | 132, 341, 794, 968, 986 |
| TfiI | GAWTC | 3 cut(s) | 28, 104, 1148 |
| Tru1I | TTAA | 2 cut(s) | 729, 927 |
| Tru9I | TTAA | 2 cut(s) | 729, 927 |
| TscAI | CASTG | 1 cut(s) | 591 |
| TseI | GCWGC | 7 cut(s) | 210, 234, 445, 619, 640, 833, 980 |
| TspDTI | ATGAA | 3 cut(s) | 182, 612, 918 |
| TspGWI | ACGGA | 1 cut(s) | 264 |
| TspRI | CASTG | 1 cut(s) | 591 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1023 |
| Vha464I | CTTAAG | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 3 cut(s) | 154, 525, 724 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 665, 776, 821 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 651 |
| XhoI | CTCGAG | 1 cut(s) | 503 |
| XspI | CTAG | 2 cut(s) | 881, 975 |