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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 12, 22 |
| AccB1I | GGYRCC | 3 cut(s) | 84, 338, 374 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 384 |
| AccBSI | CCGCTC | 4 cut(s) | 82, 449, 486, 561 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 2 cut(s) | 155, 524 |
| AclI | AACGTT | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 169 |
| AcoI | YGGCCR | 1 cut(s) | 466 |
| AcuI | CTGAAG | 2 cut(s) | 164, 702 |
| AcvI | CACGTG | 1 cut(s) | 260 |
| AcyI | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 81, 138, 184, 384, 564, 585, 586 |
| AflIII | ACRYGT | 1 cut(s) | 126 |
| AgeI | ACCGGT | 1 cut(s) | 403 |
| AgsI | TTSAA | 3 cut(s) | 281, 289, 476 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 612 |
| AjnI | CCWGG | 2 cut(s) | 87, 463 |
| AluBI | AGCT | 3 cut(s) | 115, 347, 428 |
| AluI | AGCT | 3 cut(s) | 115, 347, 428 |
| Alw26I | GTCTC | 1 cut(s) | 599 |
| AlwI | GGATC | 1 cut(s) | 169 |
| Ama87I | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| AoxI | GGCC | 5 cut(s) | 333, 393, 466, 576, 621 |
| ApeKI | GCWGC | 7 cut(s) | 136, 263, 269, 326, 361, 364, 412 |
| AsiGI | ACCGGT | 1 cut(s) | 403 |
| AspLEI | GCGC | 3 cut(s) | 316, 341, 524 |
| AspS9I | GGNCC | 3 cut(s) | 142, 577, 622 |
| AsuC2I | CCSGG | 5 cut(s) | 55, 56, 146, 586, 587 |
| AsuHPI | GGTGA | 2 cut(s) | 160, 239 |
| AvaI | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BaeGI | GKGCMC | 1 cut(s) | 259 |
| BalI | TGGCCA | 1 cut(s) | 468 |
| BanI | GGYRCC | 3 cut(s) | 84, 338, 374 |
| BanII | GRGCYC | 1 cut(s) | 484 |
| BbrPI | CACGTG | 1 cut(s) | 260 |
| BbvCI | CCTCAGC | 1 cut(s) | 249 |
| BbvI | GCAGC | 7 cut(s) | 123, 250, 256, 338, 348, 376, 424 |
| BccI | CCATC | 3 cut(s) | 83, 587, 660 |
| BceAI | ACGGC | 2 cut(s) | 52, 636 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 23, 57 |
| BciT130I | CCWGG | 2 cut(s) | 89, 465 |
| BcnI | CCSGG | 5 cut(s) | 55, 56, 146, 586, 587 |
| BcoDI | GTCTC | 1 cut(s) | 599 |
| BfaI | CTAG | 2 cut(s) | 221, 572 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| BfoI | RGCGCY | 2 cut(s) | 317, 342 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 203 |
| BlpI | GCTNAGC | 1 cut(s) | 528 |
| Bme1390I | CCNGG | 7 cut(s) | 55, 56, 89, 146, 465, 586, 587 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 612 |
| BmeT110I | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| BmgT120I | GGNCC | 3 cut(s) | 142, 577, 622 |
| BmiI | GGNNCC | 6 cut(s) | 86, 143, 340, 376, 481, 694 |
| BmrFI | CCNGG | 7 cut(s) | 55, 56, 89, 146, 465, 586, 587 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmsI | GCATC | 3 cut(s) | 31, 40, 667 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BoxI | GACNNNNGTC | 1 cut(s) | 29 |
| BpmI | CTGGAG | 2 cut(s) | 110, 137 |
| Bpu10I | CCTNAGC | 2 cut(s) | 249, 343 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 528 |
| BpuMI | CCSGG | 5 cut(s) | 55, 56, 146, 586, 587 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| BsaI | GGTCTC | 1 cut(s) | 599 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 55, 585, 618, 625 |
| BsaWI | WCCGGW | 1 cut(s) | 403 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 445, 475, 684, 714 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 81, 138, 184, 384, 564, 585, 586 |
| Bse118I | RCCGGY | 2 cut(s) | 335, 403 |
| Bse1I | ACTGG | 2 cut(s) | 441, 612 |
| BseBI | CCWGG | 2 cut(s) | 89, 465 |
| BseDI | CCNNGG | 5 cut(s) | 54, 55, 585, 618, 625 |
| BseGI | GGATG | 2 cut(s) | 598, 652 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 81, 138, 184, 384, 564, 585, 586 |
| BseMII | CTCAG | 2 cut(s) | 240, 542 |
| BseNI | ACTGG | 2 cut(s) | 441, 612 |
| BseSI | GKGCMC | 1 cut(s) | 259 |
| BseXI | GCAGC | 7 cut(s) | 123, 250, 256, 338, 348, 376, 424 |
| BsgI | GTGCAG | 1 cut(s) | 431 |
| Bsh1236I | CGCG | 2 cut(s) | 155, 524 |
| Bsh1285I | CGRYCG | 1 cut(s) | 408 |
| BshFI | GGCC | 5 cut(s) | 335, 395, 468, 578, 623 |
| BshNI | GGYRCC | 3 cut(s) | 84, 338, 374 |
| BshTI | ACCGGT | 1 cut(s) | 403 |
| BsiEI | CGRYCG | 1 cut(s) | 408 |
| BsiHKCI | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| BsiSI | CCGG | 5 cut(s) | 55, 145, 336, 404, 586 |
| BslFI | GGGAC | 3 cut(s) | 155, 541, 600 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 81, 138, 184, 384, 564, 585, 586 |
| BsmAI | GTCTC | 1 cut(s) | 599 |
| BsmFI | GGGAC | 3 cut(s) | 155, 541, 600 |
| BsnI | GGCC | 5 cut(s) | 335, 395, 468, 578, 623 |
| Bso31I | GGTCTC | 1 cut(s) | 599 |
| BsoBI | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| Bsp1286I | GDGCHC | 2 cut(s) | 259, 484 |
| Bsp143I | GATC | 1 cut(s) | 174 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 528 |
| BspANI | GGCC | 5 cut(s) | 335, 395, 468, 578, 623 |
| BspCNI | CTCAG | 2 cut(s) | 241, 541 |
| BspFNI | CGCG | 2 cut(s) | 155, 524 |
| BspLI | GGNNCC | 6 cut(s) | 86, 143, 340, 376, 481, 694 |
| BspMAI | CTGCAG | 1 cut(s) | 366 |
| BspPI | GGATC | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 3 cut(s) | 84, 338, 374 |
| BspTNI | GGTCTC | 1 cut(s) | 599 |
| BsrBI | CCGCTC | 4 cut(s) | 82, 449, 486, 561 |
| BsrFI | RCCGGY | 2 cut(s) | 335, 403 |
| BsrI | ACTGG | 2 cut(s) | 441, 612 |
| BssAI | RCCGGY | 2 cut(s) | 335, 403 |
| BssECI | CCNNGG | 5 cut(s) | 54, 55, 585, 618, 625 |
| BssMI | GATC | 1 cut(s) | 174 |
| BssNI | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 465 |
| Bst4CI | ACNGT | 1 cut(s) | 601 |
| BstACI | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 263 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 4 cut(s) | 238, 337, 484, 670 |
| BstDEI | CTNAG | 5 cut(s) | 249, 343, 420, 528, 549 |
| BstDSI | CCRYGG | 1 cut(s) | 618 |
| BstEII | GGTNACC | 1 cut(s) | 148 |
| BstF5I | GGATG | 2 cut(s) | 598, 652 |
| BstFNI | CGCG | 2 cut(s) | 155, 524 |
| BstH2I | RGCGCY | 2 cut(s) | 317, 342 |
| BstHHI | GCGC | 3 cut(s) | 316, 341, 524 |
| BstKTI | GATC | 1 cut(s) | 177 |
| BstMAI | GTCTC | 1 cut(s) | 599 |
| BstMBI | GATC | 1 cut(s) | 174 |
| BstMCI | CGRYCG | 1 cut(s) | 408 |
| BstNI | CCWGG | 2 cut(s) | 89, 465 |
| BstNSI | RCATGY | 1 cut(s) | 130 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 29 |
| BstPI | GGTNACC | 1 cut(s) | 148 |
| BstSCI | CCNGG | 7 cut(s) | 53, 54, 87, 144, 463, 584, 585 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstSLI | GKGCMC | 1 cut(s) | 259 |
| BstUI | CGCG | 2 cut(s) | 155, 524 |
| BstV1I | GCAGC | 7 cut(s) | 123, 250, 256, 338, 348, 376, 424 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 5 cut(s) | 335, 395, 468, 578, 623 |
| BtgI | CCRYGG | 1 cut(s) | 618 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 598, 652 |
| BtsI | GCAGTG | 1 cut(s) | 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| Cac8I | GCNNGC | 4 cut(s) | 238, 337, 484, 670 |
| CfoI | GCGC | 3 cut(s) | 316, 341, 524 |
| Cfr10I | RCCGGY | 2 cut(s) | 335, 403 |
| Cfr13I | GGNCC | 3 cut(s) | 142, 577, 622 |
| Cfr9I | CCCGGG | 2 cut(s) | 54, 585 |
| CseI | GACGC | 1 cut(s) | 544 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CspAI | ACCGGT | 1 cut(s) | 403 |
| CviAII | CATG | 3 cut(s) | 127, 352, 470 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 5 cut(s) | 249, 343, 420, 528, 549 |
| DinI | GGCGCC | 1 cut(s) | 340 |
| DpnI | GATC | 1 cut(s) | 176 |
| DpnII | GATC | 1 cut(s) | 174 |
| DriI | GACNNNNNGTC | 1 cut(s) | 612 |
| EaeI | YGGCCR | 1 cut(s) | 466 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 612 |
| EciI | GGCGGA | 7 cut(s) | 181, 221, 314, 522, 605, 655, 705 |
| Eco147I | AGGCCT | 1 cut(s) | 395 |
| Eco24I | GRGCYC | 1 cut(s) | 484 |
| Eco31I | GGTCTC | 1 cut(s) | 599 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 2 cut(s) | 164, 702 |
| Eco72I | CACGTG | 1 cut(s) | 260 |
| Eco88I | CYCGRG | 4 cut(s) | 54, 487, 585, 624 |
| Eco91I | GGTNACC | 1 cut(s) | 148 |
| EcoO65I | GGTNACC | 1 cut(s) | 148 |
| EcoRII | CCWGG | 2 cut(s) | 87, 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 484 |
| EgeI | GGCGCC | 1 cut(s) | 340 |
| EheI | GGCGCC | 1 cut(s) | 340 |
| FaeI | CATG | 3 cut(s) | 130, 355, 473 |
| FaiI | YATR | 3 cut(s) | 128, 353, 471 |
| FaqI | GGGAC | 3 cut(s) | 155, 541, 600 |
| FatI | CATG | 3 cut(s) | 126, 351, 469 |
| FauI | CCCGC | 6 cut(s) | 132, 177, 488, 491, 566, 718 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| FokI | GGATG | 2 cut(s) | 605, 639 |
| FriOI | GRGCYC | 1 cut(s) | 484 |
| FspBI | CTAG | 2 cut(s) | 221, 572 |
| GlaI | GCGC | 3 cut(s) | 315, 340, 523 |
| GsuI | CTGGAG | 2 cut(s) | 110, 137 |
| HaeII | RGCGCY | 2 cut(s) | 317, 342 |
| HaeIII | GGCC | 5 cut(s) | 335, 395, 468, 578, 623 |
| HapII | CCGG | 5 cut(s) | 55, 145, 336, 404, 586 |
| HgaI | GACGC | 1 cut(s) | 544 |
| HhaI | GCGC | 3 cut(s) | 316, 341, 524 |
| Hin1I | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| Hin1II | CATG | 3 cut(s) | 130, 355, 473 |
| Hin6I | GCGC | 3 cut(s) | 314, 339, 522 |
| HinP1I | GCGC | 3 cut(s) | 314, 339, 522 |
| HincII | GTYRAC | 2 cut(s) | 7, 34 |
| HindII | GTYRAC | 2 cut(s) | 7, 34 |
| HinfI | GANTC | 3 cut(s) | 188, 281, 510 |
| HpaII | CCGG | 5 cut(s) | 55, 145, 336, 404, 586 |
| HphI | GGTGA | 2 cut(s) | 160, 239 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 34 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 634 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 34 |
| Hpy99I | CGWCG | 4 cut(s) | 14, 21, 38, 701 |
| HpyAV | CCTTC | 7 cut(s) | 151, 188, 304, 325, 385, 470, 677 |
| HpyCH4III | ACNGT | 1 cut(s) | 601 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 19, 69, 259, 699 |
| HpyCH4V | TGCA | 2 cut(s) | 364, 412 |
| HpyF3I | CTNAG | 5 cut(s) | 249, 343, 420, 528, 549 |
| HpySE526I | ACGT | 5 cut(s) | 9, 19, 69, 259, 699 |
| Hsp92I | GRCGYC | 4 cut(s) | 9, 19, 339, 536 |
| Hsp92II | CATG | 3 cut(s) | 130, 355, 473 |
| HspAI | GCGC | 3 cut(s) | 314, 339, 522 |
| KasI | GGCGCC | 1 cut(s) | 338 |
| KroI | GCCGGC | 1 cut(s) | 335 |
| KroNI | GCCGGC | 1 cut(s) | 337 |
| Kzo9I | GATC | 1 cut(s) | 174 |
| LmnI | GCTCC | 6 cut(s) | 91, 118, 433, 454, 479, 692 |
| Lsp1109I | GCAGC | 7 cut(s) | 123, 250, 256, 338, 348, 376, 424 |
| LweI | GCATC | 3 cut(s) | 31, 40, 667 |
| MaeI | CTAG | 2 cut(s) | 221, 572 |
| MaeII | ACGT | 5 cut(s) | 9, 19, 69, 259, 699 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 1 cut(s) | 176 |
| MbiI | CCGCTC | 4 cut(s) | 82, 449, 486, 561 |
| MboI | GATC | 1 cut(s) | 174 |
| MboII | GAAGA | 1 cut(s) | 175 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MhlI | GDGCHC | 2 cut(s) | 259, 484 |
| MlsI | TGGCCA | 1 cut(s) | 468 |
| MluNI | TGGCCA | 1 cut(s) | 468 |
| Mly113I | GGCGCC | 1 cut(s) | 339 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MnlI | CCTC | 8 cut(s) | 202, 217, 238, 244, 406, 427, 511, 620 |
| Mox20I | TGGCCA | 1 cut(s) | 468 |
| MroNI | GCCGGC | 1 cut(s) | 335 |
| MscI | TGGCCA | 1 cut(s) | 468 |
| MslI | CAYNNNNRTG | 1 cut(s) | 356 |
| Msp20I | TGGCCA | 1 cut(s) | 468 |
| MspA1I | CMGCKG | 4 cut(s) | 184, 275, 532, 672 |
| MspI | CCGG | 5 cut(s) | 55, 145, 336, 404, 586 |
| MspR9I | CCNGG | 7 cut(s) | 55, 56, 89, 146, 465, 586, 587 |
| MvaI | CCWGG | 2 cut(s) | 89, 465 |
| MvnI | CGCG | 2 cut(s) | 155, 524 |
| NaeI | GCCGGC | 1 cut(s) | 337 |
| NarI | GGCGCC | 1 cut(s) | 339 |
| NciI | CCSGG | 5 cut(s) | 55, 56, 146, 586, 587 |
| NdeII | GATC | 1 cut(s) | 174 |
| NgoMIV | GCCGGC | 1 cut(s) | 335 |
| NlaIII | CATG | 3 cut(s) | 130, 355, 473 |
| NlaIV | GGNNCC | 6 cut(s) | 86, 143, 340, 376, 481, 694 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| NspI | RCATGY | 1 cut(s) | 130 |
| PceI | AGGCCT | 1 cut(s) | 395 |
| PciI | ACATGT | 1 cut(s) | 126 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PdiI | GCCGGC | 1 cut(s) | 337 |
| PfeI | GAWTC | 2 cut(s) | 281, 510 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 384 |
| PinAI | ACCGGT | 1 cut(s) | 403 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PluTI | GGCGCC | 1 cut(s) | 342 |
| PmaCI | CACGTG | 1 cut(s) | 260 |
| PmlI | CACGTG | 1 cut(s) | 260 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PscI | ACATGT | 1 cut(s) | 126 |
| PshAI | GACNNNNGTC | 1 cut(s) | 29 |
| Psp1406I | AACGTT | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 87, 463 |
| PspCI | CACGTG | 1 cut(s) | 260 |
| PspEI | GGTNACC | 1 cut(s) | 148 |
| PspGI | CCWGG | 2 cut(s) | 87, 463 |
| PspN4I | GGNNCC | 6 cut(s) | 86, 143, 340, 376, 481, 694 |
| PspPI | GGNCC | 3 cut(s) | 142, 577, 622 |
| PstI | CTGCAG | 1 cut(s) | 366 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| RseI | CAYNNNNRTG | 1 cut(s) | 356 |
| SalI | GTCGAC | 1 cut(s) | 32 |
| Sau3AI | GATC | 1 cut(s) | 174 |
| Sau96I | GGNCC | 3 cut(s) | 142, 577, 622 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 7 cut(s) | 55, 56, 89, 146, 465, 586, 587 |
| SduI | GDGCHC | 2 cut(s) | 259, 484 |
| SfaNI | GCATC | 3 cut(s) | 31, 40, 667 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| SfoI | GGCGCC | 1 cut(s) | 340 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmaI | CCCGGG | 2 cut(s) | 56, 587 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 356 |
| SseBI | AGGCCT | 1 cut(s) | 395 |
| SspDI | GGCGCC | 1 cut(s) | 338 |
| SspMI | CTAG | 2 cut(s) | 221, 572 |
| StuI | AGGCCT | 1 cut(s) | 395 |
| StyD4I | CCNGG | 7 cut(s) | 53, 54, 87, 144, 463, 584, 585 |
| TaaI | ACNGT | 1 cut(s) | 601 |
| TaiI | ACGT | 5 cut(s) | 12, 22, 72, 262, 702 |
| TaqI | TCGA | 4 cut(s) | 12, 33, 78, 398 |
| TauI | GCSGC | 7 cut(s) | 85, 197, 220, 269, 275, 527, 578 |
| TfiI | GAWTC | 2 cut(s) | 281, 510 |
| TscAI | CASTG | 1 cut(s) | 110 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 7 cut(s) | 136, 263, 269, 326, 361, 364, 412 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspMI | CCCGGG | 2 cut(s) | 54, 585 |
| TspRI | CASTG | 1 cut(s) | 110 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 384 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XceI | RCATGY | 1 cut(s) | 130 |
| XmaI | CCCGGG | 2 cut(s) | 54, 585 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XspI | CTAG | 2 cut(s) | 221, 572 |
| ZraI | GACGTC | 2 cut(s) | 10, 20 |