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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 976 |
| AccB1I | GGYRCC | 4 cut(s) | 1096, 1757, 1850, 1973 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 370 |
| AccBSI | CCGCTC | 7 cut(s) | 419, 844, 1159, 1399, 1465, 1528, 1857 |
| AccI | GTMKAC | 2 cut(s) | 174, 431 |
| AclWI | GGATC | 2 cut(s) | 476, 2095 |
| AcoI | YGGCCR | 4 cut(s) | 306, 1407, 1455, 1650 |
| AcuI | CTGAAG | 4 cut(s) | 1231, 1653, 1766, 2067 |
| AcyI | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| AfaI | GTAC | 3 cut(s) | 650, 1642, 1810 |
| AfeI | AGCGCT | 2 cut(s) | 820, 1313 |
| AflIII | ACRYGT | 2 cut(s) | 1287, 1486 |
| AgsI | TTSAA | 6 cut(s) | 563, 602, 1072, 1450, 1664, 1672 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1260 |
| AjiI | CACGTC | 1 cut(s) | 1021 |
| AjnI | CCWGG | 2 cut(s) | 156, 369 |
| AluBI | AGCT | 8 cut(s) | 27, 59, 253, 827, 1114, 1251, 1330, 2083 |
| AluI | AGCT | 8 cut(s) | 27, 59, 253, 827, 1114, 1251, 1330, 2083 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 1332 |
| Alw26I | GTCTC | 7 cut(s) | 686, 890, 1355, 1375, 1495, 1814, 1976 |
| AlwI | GGATC | 2 cut(s) | 476, 2095 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 679 |
| Ama87I | CYCGRG | 2 cut(s) | 689, 1962 |
| Aor51HI | AGCGCT | 2 cut(s) | 820, 1313 |
| ApaI | GGGCCC | 2 cut(s) | 1039, 1726 |
| AsuC2I | CCSGG | 5 cut(s) | 240, 573, 952, 1963, 1964 |
| AsuHPI | GGTGA | 9 cut(s) | 50, 259, 694, 770, 940, 946, 1166, 1606, 1622 |
| AvaI | CYCGRG | 2 cut(s) | 689, 1962 |
| AvaII | GGWCC | 4 cut(s) | 613, 942, 1896, 2007 |
| AxyI | CCTNAGG | 1 cut(s) | 1625 |
| BaeGI | GKGCMC | 3 cut(s) | 1039, 1726, 1855 |
| BalI | TGGCCA | 2 cut(s) | 1409, 1457 |
| BanI | GGYRCC | 4 cut(s) | 1096, 1757, 1850, 1973 |
| BanII | GRGCYC | 5 cut(s) | 29, 245, 1039, 1332, 1726 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 1332 |
| BceAI | ACGGC | 6 cut(s) | 155, 293, 1088, 1202, 1242, 1643 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 154, 188 |
| BciT130I | CCWGG | 2 cut(s) | 158, 371 |
| BcnI | CCSGG | 5 cut(s) | 240, 573, 952, 1963, 1964 |
| BcoDI | GTCTC | 7 cut(s) | 686, 890, 1355, 1375, 1495, 1814, 1976 |
| BfaI | CTAG | 8 cut(s) | 30, 60, 1190, 1205, 1727, 1949, 1989, 2095 |
| BfmI | CTRYAG | 2 cut(s) | 822, 1520 |
| BfoI | RGCGCY | 6 cut(s) | 704, 822, 968, 1100, 1315, 1761 |
| BfuAI | ACCTGC | 1 cut(s) | 976 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1061 |
| BlpI | GCTNAGC | 1 cut(s) | 704 |
| Bme1390I | CCNGG | 7 cut(s) | 158, 240, 371, 573, 952, 1963, 1964 |
| Bme18I | GGWCC | 4 cut(s) | 613, 942, 1896, 2007 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1260 |
| BmeT110I | CYCGRG | 2 cut(s) | 689, 1962 |
| BmgBI | CACGTC | 1 cut(s) | 1021 |
| BmrFI | CCNGG | 7 cut(s) | 158, 240, 371, 573, 952, 1963, 1964 |
| BmrI | ACTGGG | 1 cut(s) | 287 |
| BmsI | GCATC | 3 cut(s) | 837, 1780, 2047 |
| BmuI | ACTGGG | 1 cut(s) | 287 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1826 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 327, 359, 1103, 1135 |
| BpmI | CTGGAG | 5 cut(s) | 140, 659, 981, 989, 1337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1331 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 704 |
| BpuEI | CTTGAG | 2 cut(s) | 777, 1843 |
| BpuMI | CCSGG | 5 cut(s) | 240, 573, 952, 1963, 1964 |
| BsaHI | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| BsaI | GGTCTC | 1 cut(s) | 1355 |
| BsaWI | WCCGGW | 2 cut(s) | 231, 721 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 632, 662 |
| Bse118I | RCCGGY | 3 cut(s) | 772, 889, 925 |
| Bse1I | ACTGG | 6 cut(s) | 96, 293, 523, 537, 709, 1389 |
| Bse21I | CCTNAGG | 1 cut(s) | 1625 |
| Bse3DI | GCAATG | 1 cut(s) | 615 |
| BseBI | CCWGG | 2 cut(s) | 158, 371 |
| BseGI | GGATG | 9 cut(s) | 166, 198, 277, 411, 769, 852, 1882, 1912, 1975 |
| BseMI | GCAATG | 1 cut(s) | 615 |
| BseMII | CTCAG | 4 cut(s) | 129, 695, 1345, 1616 |
| BseNI | ACTGG | 6 cut(s) | 96, 293, 523, 537, 709, 1389 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| BseSI | GKGCMC | 3 cut(s) | 1039, 1726, 1855 |
| BseX3I | CGGCCG | 2 cut(s) | 306, 1650 |
| BseYI | CCCAGC | 5 cut(s) | 107, 827, 1718, 1899, 2083 |
| BsgI | GTGCAG | 4 cut(s) | 239, 800, 1265, 1583 |
| Bsh1285I | CGRYCG | 3 cut(s) | 309, 1653, 2031 |
| BshNI | GGYRCC | 4 cut(s) | 1096, 1757, 1850, 1973 |
| BsiEI | CGRYCG | 3 cut(s) | 309, 1653, 2031 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 1332 |
| BsiHKCI | CYCGRG | 2 cut(s) | 689, 1962 |
| BslFI | GGGAC | 4 cut(s) | 435, 1290, 1481, 1882 |
| BsmAI | GTCTC | 7 cut(s) | 686, 890, 1355, 1375, 1495, 1814, 1976 |
| BsmBI | CGTCTC | 1 cut(s) | 1495 |
| BsmFI | GGGAC | 4 cut(s) | 435, 1290, 1481, 1882 |
| BsmI | GAATGC | 1 cut(s) | 1667 |
| Bso31I | GGTCTC | 1 cut(s) | 1355 |
| BsoBI | CYCGRG | 2 cut(s) | 689, 1962 |
| Bsp120I | GGGCCC | 2 cut(s) | 1035, 1722 |
| Bsp1286I | GDGCHC | 6 cut(s) | 29, 245, 1039, 1332, 1726, 1855 |
| Bsp143I | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 704 |
| BspCNI | CTCAG | 4 cut(s) | 130, 696, 1344, 1617 |
| BspHI | TCATGA | 2 cut(s) | 313, 1143 |
| BspMAI | CTGCAG | 2 cut(s) | 826, 1524 |
| BspMI | ACCTGC | 1 cut(s) | 976 |
| BspPI | GGATC | 2 cut(s) | 476, 2095 |
| BspT107I | GGYRCC | 4 cut(s) | 1096, 1757, 1850, 1973 |
| BspTNI | GGTCTC | 1 cut(s) | 1355 |
| BsrBI | CCGCTC | 7 cut(s) | 419, 844, 1159, 1399, 1465, 1528, 1857 |
| BsrDI | GCAATG | 1 cut(s) | 615 |
| BsrFI | RCCGGY | 3 cut(s) | 772, 889, 925 |
| BsrI | ACTGG | 6 cut(s) | 96, 293, 523, 537, 709, 1389 |
| BssAI | RCCGGY | 3 cut(s) | 772, 889, 925 |
| BssMI | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| BssNAI | GTATAC | 1 cut(s) | 432 |
| BssNI | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| BssT1I | CCWWGG | 5 cut(s) | 331, 654, 911, 1345, 1410 |
| Bst1107I | GTATAC | 1 cut(s) | 432 |
| Bst2UI | CCWGG | 2 cut(s) | 158, 371 |
| Bst4CI | ACNGT | 2 cut(s) | 901, 1078 |
| Bst6I | CTCTTC | 4 cut(s) | 441, 1002, 1175, 1629 |
| BstACI | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2057 |
| BstDEI | CTNAG | 4 cut(s) | 138, 704, 1331, 1625 |
| BstDSI | CCRYGG | 3 cut(s) | 1224, 1438, 1842 |
| BstEII | GGTNACC | 1 cut(s) | 234 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1520 |
| BstF5I | GGATG | 9 cut(s) | 166, 198, 277, 411, 769, 852, 1882, 1912, 1975 |
| BstH2I | RGCGCY | 6 cut(s) | 704, 822, 968, 1100, 1315, 1761 |
| BstKTI | GATC | 4 cut(s) | 471, 2014, 2031, 2090 |
| BstMAI | GTCTC | 7 cut(s) | 686, 890, 1355, 1375, 1495, 1814, 1976 |
| BstMBI | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| BstMCI | CGRYCG | 3 cut(s) | 309, 1653, 2031 |
| BstNI | CCWGG | 2 cut(s) | 158, 371 |
| BstNSI | RCATGY | 3 cut(s) | 649, 1291, 1744 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1826 |
| BstPI | GGTNACC | 1 cut(s) | 234 |
| BstSCI | CCNGG | 7 cut(s) | 156, 238, 369, 571, 950, 1961, 1962 |
| BstSFI | CTRYAG | 2 cut(s) | 822, 1520 |
| BstSLI | GKGCMC | 3 cut(s) | 1039, 1726, 1855 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 661 |
| BstZ17I | GTATAC | 1 cut(s) | 432 |
| BstZI | CGGCCG | 2 cut(s) | 306, 1650 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1625 |
| BtgI | CCRYGG | 3 cut(s) | 1224, 1438, 1842 |
| BtgZI | GCGATG | 2 cut(s) | 1495, 1712 |
| BtrI | CACGTC | 1 cut(s) | 1021 |
| BtsCI | GGATG | 9 cut(s) | 166, 198, 277, 411, 769, 852, 1882, 1912, 1975 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 3 cut(s) | 103, 165, 300 |
| BveI | ACCTGC | 1 cut(s) | 976 |
| CaiI | CAGNNNCTG | 1 cut(s) | 679 |
| CciI | TCATGA | 2 cut(s) | 313, 1143 |
| CciNI | GCGGCCGC | 1 cut(s) | 1650 |
| Cfr10I | RCCGGY | 3 cut(s) | 772, 889, 925 |
| Cfr42I | CCGCGG | 2 cut(s) | 1441, 1845 |
| Cfr9I | CCCGGG | 1 cut(s) | 1962 |
| CseI | GACGC | 6 cut(s) | 270, 685, 1290, 1477, 1767, 1886 |
| Csp6I | GTAC | 3 cut(s) | 649, 1641, 1809 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 844, 879, 1213, 1248 |
| CviAII | CATG | 5 cut(s) | 314, 646, 1144, 1288, 1741 |
| CviQI | GTAC | 3 cut(s) | 649, 1641, 1809 |
| DdeI | CTNAG | 4 cut(s) | 138, 704, 1331, 1625 |
| DinI | GGCGCC | 2 cut(s) | 1098, 1759 |
| DpnI | GATC | 4 cut(s) | 470, 2013, 2030, 2089 |
| DpnII | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1260 |
| EaeI | YGGCCR | 4 cut(s) | 306, 1407, 1455, 1650 |
| EagI | CGGCCG | 2 cut(s) | 306, 1650 |
| Eam1104I | CTCTTC | 4 cut(s) | 441, 1002, 1175, 1629 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1260 |
| EarI | CTCTTC | 4 cut(s) | 441, 1002, 1175, 1629 |
| Ecl136II | GAGCTC | 2 cut(s) | 27, 1330 |
| EclXI | CGGCCG | 2 cut(s) | 306, 1650 |
| Eco130I | CCWWGG | 5 cut(s) | 331, 654, 911, 1345, 1410 |
| Eco24I | GRGCYC | 5 cut(s) | 29, 245, 1039, 1332, 1726 |
| Eco31I | GGTCTC | 1 cut(s) | 1355 |
| Eco47I | GGWCC | 4 cut(s) | 613, 942, 1896, 2007 |
| Eco47III | AGCGCT | 2 cut(s) | 820, 1313 |
| Eco52I | CGGCCG | 2 cut(s) | 306, 1650 |
| Eco53kI | GAGCTC | 2 cut(s) | 27, 1330 |
| Eco57I | CTGAAG | 4 cut(s) | 1231, 1653, 1766, 2067 |
| Eco81I | CCTNAGG | 1 cut(s) | 1625 |
| Eco88I | CYCGRG | 2 cut(s) | 689, 1962 |
| Eco91I | GGTNACC | 1 cut(s) | 234 |
| EcoICRI | GAGCTC | 2 cut(s) | 27, 1330 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1520 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1035, 1722, 1723, 1896 |
| EcoO65I | GGTNACC | 1 cut(s) | 234 |
| EcoRII | CCWGG | 2 cut(s) | 156, 369 |
| EcoT14I | CCWWGG | 5 cut(s) | 331, 654, 911, 1345, 1410 |
| EcoT38I | GRGCYC | 5 cut(s) | 29, 245, 1039, 1332, 1726 |
| EgeI | GGCGCC | 2 cut(s) | 1098, 1759 |
| EheI | GGCGCC | 2 cut(s) | 1098, 1759 |
| ErhI | CCWWGG | 5 cut(s) | 331, 654, 911, 1345, 1410 |
| Esp3I | CGTCTC | 1 cut(s) | 1495 |
| FaeI | CATG | 5 cut(s) | 317, 649, 1147, 1291, 1744 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1298, 1330 |
| FaqI | GGGAC | 4 cut(s) | 435, 1290, 1481, 1882 |
| FatI | CATG | 5 cut(s) | 313, 645, 1143, 1287, 1740 |
| FblI | GTMKAC | 2 cut(s) | 174, 431 |
| FokI | GGATG | 9 cut(s) | 173, 205, 284, 398, 776, 859, 1869, 1899, 1982 |
| FriOI | GRGCYC | 5 cut(s) | 29, 245, 1039, 1332, 1726 |
| FspBI | CTAG | 8 cut(s) | 30, 60, 1190, 1205, 1727, 1949, 1989, 2095 |
| GsaI | CCCAGC | 5 cut(s) | 111, 831, 1722, 1903, 2087 |
| GsuI | CTGGAG | 5 cut(s) | 140, 659, 981, 989, 1337 |
| HaeII | RGCGCY | 6 cut(s) | 704, 822, 968, 1100, 1315, 1761 |
| HgaI | GACGC | 6 cut(s) | 270, 685, 1290, 1477, 1767, 1886 |
| Hin1I | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| Hin1II | CATG | 5 cut(s) | 317, 649, 1147, 1291, 1744 |
| HincII | GTYRAC | 2 cut(s) | 175, 991 |
| HindII | GTYRAC | 2 cut(s) | 175, 991 |
| HphI | GGTGA | 9 cut(s) | 50, 259, 694, 770, 940, 946, 1166, 1606, 1622 |
| Hpy166II | GTNNAC | 4 cut(s) | 175, 432, 685, 991 |
| Hpy188I | TCNGA | 7 cut(s) | 400, 416, 473, 509, 516, 1927, 2011 |
| Hpy188III | TCNNGA | 5 cut(s) | 20, 314, 638, 1144, 1354 |
| Hpy8I | GTNNAC | 4 cut(s) | 175, 432, 685, 991 |
| Hpy99I | CGWCG | 7 cut(s) | 71, 176, 179, 286, 984, 1258, 1927 |
| HpyCH4III | ACNGT | 2 cut(s) | 901, 1078 |
| HpyCH4IV | ACGT | 5 cut(s) | 227, 979, 1020, 1256, 1452 |
| HpyCH4V | TGCA | 8 cut(s) | 256, 781, 824, 886, 1282, 1522, 1564, 1619 |
| HpyF3I | CTNAG | 4 cut(s) | 138, 704, 1331, 1625 |
| HpySE526I | ACGT | 5 cut(s) | 227, 979, 1020, 1256, 1452 |
| Hsp92I | GRCGYC | 4 cut(s) | 281, 1097, 1301, 1758 |
| Hsp92II | CATG | 5 cut(s) | 317, 649, 1147, 1291, 1744 |
| KasI | GGCGCC | 2 cut(s) | 1096, 1757 |
| KflI | GGGWCCC | 1 cut(s) | 1896 |
| KspI | CCGCGG | 2 cut(s) | 1441, 1845 |
| Kzo9I | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| LmnI | GCTCC | 6 cut(s) | 107, 841, 1069, 1327, 1501, 1525 |
| LweI | GCATC | 3 cut(s) | 837, 1780, 2047 |
| MaeI | CTAG | 8 cut(s) | 30, 60, 1190, 1205, 1727, 1949, 1989, 2095 |
| MaeII | ACGT | 5 cut(s) | 227, 979, 1020, 1256, 1452 |
| MaeIII | GTNAC | 9 cut(s) | 208, 234, 337, 528, 575, 934, 1421, 1779, 1874 |
| MalI | GATC | 4 cut(s) | 470, 2013, 2030, 2089 |
| MbiI | CCGCTC | 7 cut(s) | 419, 844, 1159, 1399, 1465, 1528, 1857 |
| MboI | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| MboII | GAAGA | 8 cut(s) | 125, 128, 458, 1019, 1060, 1162, 1646, 2066 |
| MfeI | CAATTG | 1 cut(s) | 1230 |
| MhlI | GDGCHC | 6 cut(s) | 29, 245, 1039, 1332, 1726, 1855 |
| MlsI | TGGCCA | 2 cut(s) | 1409, 1457 |
| MluCI | AATT | 2 cut(s) | 493, 1230 |
| MluI | ACGCGT | 1 cut(s) | 1486 |
| MluNI | TGGCCA | 2 cut(s) | 1409, 1457 |
| Mly113I | GGCGCC | 2 cut(s) | 1097, 1758 |
| MmeI | TCCRAC | 6 cut(s) | 378, 430, 532, 1479, 1584, 1905 |
| Mox20I | TGGCCA | 2 cut(s) | 1409, 1457 |
| MscI | TGGCCA | 2 cut(s) | 1409, 1457 |
| MseI | TTAA | 3 cut(s) | 387, 393, 1689 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 756, 1292, 1559, 1583, 1739 |
| Msp20I | TGGCCA | 2 cut(s) | 1409, 1457 |
| MspR9I | CCNGG | 7 cut(s) | 158, 240, 371, 573, 952, 1963, 1964 |
| MunI | CAATTG | 1 cut(s) | 1230 |
| Mva1269I | GAATGC | 1 cut(s) | 1667 |
| MvaI | CCWGG | 2 cut(s) | 158, 371 |
| NarI | GGCGCC | 2 cut(s) | 1097, 1758 |
| NciI | CCSGG | 5 cut(s) | 240, 573, 952, 1963, 1964 |
| NdeII | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| NlaIII | CATG | 5 cut(s) | 317, 649, 1147, 1291, 1744 |
| NmeAIII | GCCGAG | 2 cut(s) | 1027, 1153 |
| NmuCI | GTSAC | 6 cut(s) | 208, 337, 934, 1421, 1779, 1874 |
| NotI | GCGGCCGC | 1 cut(s) | 1650 |
| NspI | RCATGY | 3 cut(s) | 649, 1291, 1744 |
| PagI | TCATGA | 2 cut(s) | 313, 1143 |
| PciI | ACATGT | 1 cut(s) | 1287 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1290, 1458 |
| PctI | GAATGC | 1 cut(s) | 1667 |
| PfeI | GAWTC | 3 cut(s) | 286, 920, 1944 |
| PflFI | GACNNNGTC | 1 cut(s) | 1705 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 370 |
| PfoI | TCCNGGA | 2 cut(s) | 156, 369 |
| Ple19I | CGATCG | 1 cut(s) | 2031 |
| PluTI | GGCGCC | 2 cut(s) | 1100, 1761 |
| PpuMI | RGGWCCY | 1 cut(s) | 1896 |
| PscI | ACATGT | 1 cut(s) | 1287 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1826 |
| Psp124BI | GAGCTC | 2 cut(s) | 29, 1332 |
| Psp5II | RGGWCCY | 1 cut(s) | 1896 |
| Psp6I | CCWGG | 2 cut(s) | 156, 369 |
| PspEI | GGTNACC | 1 cut(s) | 234 |
| PspFI | CCCAGC | 5 cut(s) | 107, 827, 1718, 1899, 2083 |
| PspGI | CCWGG | 2 cut(s) | 156, 369 |
| PspOMI | GGGCCC | 2 cut(s) | 1035, 1722 |
| PspPPI | RGGWCCY | 1 cut(s) | 1896 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1124, 1156 |
| PstI | CTGCAG | 2 cut(s) | 826, 1524 |
| PstNI | CAGNNNCTG | 1 cut(s) | 679 |
| PsyI | GACNNNGTC | 1 cut(s) | 1705 |
| PvuI | CGATCG | 1 cut(s) | 2031 |
| PvuII | CAGCTG | 2 cut(s) | 827, 2083 |
| RsaI | GTAC | 3 cut(s) | 650, 1642, 1810 |
| RsaNI | GTAC | 3 cut(s) | 649, 1641, 1809 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 756, 1292, 1559, 1583, 1739 |
| SacI | GAGCTC | 2 cut(s) | 29, 1332 |
| SacII | CCGCGG | 2 cut(s) | 1441, 1845 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SaqAI | TTAA | 3 cut(s) | 387, 393, 1689 |
| Sau3AI | GATC | 4 cut(s) | 468, 2011, 2028, 2087 |
| ScrFI | CCNGG | 7 cut(s) | 158, 240, 371, 573, 952, 1963, 1964 |
| SduI | GDGCHC | 6 cut(s) | 29, 245, 1039, 1332, 1726, 1855 |
| SfaNI | GCATC | 3 cut(s) | 837, 1780, 2047 |
| SfcI | CTRYAG | 2 cut(s) | 822, 1520 |
| SfoI | GGCGCC | 2 cut(s) | 1098, 1759 |
| Sfr303I | CCGCGG | 2 cut(s) | 1441, 1845 |
| SgrAI | CRCCGGYG | 1 cut(s) | 925 |
| SgrBI | CCGCGG | 2 cut(s) | 1441, 1845 |
| SgrDI | CGTCGACG | 1 cut(s) | 173 |
| SinI | GGWCC | 4 cut(s) | 613, 942, 1896, 2007 |
| SmaI | CCCGGG | 1 cut(s) | 1964 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 756, 1292, 1559, 1583, 1739 |
| SmlI | CTYRAG | 2 cut(s) | 792, 1858 |
| SmoI | CTYRAG | 2 cut(s) | 792, 1858 |
| Sse9I | AATT | 2 cut(s) | 493, 1230 |
| SspDI | GGCGCC | 2 cut(s) | 1096, 1757 |
| SspMI | CTAG | 8 cut(s) | 30, 60, 1190, 1205, 1727, 1949, 1989, 2095 |
| SstI | GAGCTC | 2 cut(s) | 29, 1332 |
| StyD4I | CCNGG | 7 cut(s) | 156, 238, 369, 571, 950, 1961, 1962 |
| StyI | CCWWGG | 5 cut(s) | 331, 654, 911, 1345, 1410 |
| TaaI | ACNGT | 2 cut(s) | 901, 1078 |
| TaiI | ACGT | 5 cut(s) | 230, 982, 1023, 1259, 1455 |
| TaqII | GACCGA | 2 cut(s) | 1604, 1718 |
| TasI | AATT | 2 cut(s) | 493, 1230 |
| TfiI | GAWTC | 3 cut(s) | 286, 920, 1944 |
| Tru1I | TTAA | 3 cut(s) | 387, 393, 1689 |
| Tru9I | TTAA | 3 cut(s) | 387, 393, 1689 |
| TscAI | CASTG | 3 cut(s) | 103, 172, 300 |
| TseFI | GTSAC | 6 cut(s) | 208, 337, 934, 1421, 1779, 1874 |
| Tsp45I | GTSAC | 6 cut(s) | 208, 337, 934, 1421, 1779, 1874 |
| TspDTI | ATGAA | 5 cut(s) | 209, 233, 302, 1132, 1497 |
| TspGWI | ACGGA | 1 cut(s) | 1056 |
| TspMI | CCCGGG | 1 cut(s) | 1962 |
| TspRI | CASTG | 3 cut(s) | 103, 172, 300 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 370 |
| VpaK11BI | GGWCC | 4 cut(s) | 613, 942, 1896, 2007 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1520 |
| XceI | RCATGY | 3 cut(s) | 649, 1291, 1744 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 752 |
| XmaI | CCCGGG | 1 cut(s) | 1962 |
| XmiI | GTMKAC | 2 cut(s) | 174, 431 |
| XspI | CTAG | 8 cut(s) | 30, 60, 1190, 1205, 1727, 1949, 1989, 2095 |