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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 511 |
| Acc36I | ACCTGC | 1 cut(s) | 455 |
| Acc65I | GGTACC | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 2 cut(s) | 374, 578 |
| AccBSI | CCGCTC | 1 cut(s) | 145 |
| AccII | CGCG | 3 cut(s) | 57, 105, 638 |
| AcoI | YGGCCR | 3 cut(s) | 72, 204, 569 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AcvI | CACGTG | 1 cut(s) | 542 |
| AcyI | GRCGYC | 1 cut(s) | 395 |
| AfaI | GTAC | 4 cut(s) | 259, 411, 469, 580 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 81, 139, 198, 243, 244, 464 |
| AflIII | ACRYGT | 2 cut(s) | 103, 357 |
| AgsI | TTSAA | 5 cut(s) | 281, 289, 307, 364, 653 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 594 |
| AjnI | CCWGG | 1 cut(s) | 552 |
| AluBI | AGCT | 3 cut(s) | 64, 461, 605 |
| AluI | AGCT | 3 cut(s) | 64, 461, 605 |
| Alw26I | GTCTC | 3 cut(s) | 112, 431, 581 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 22 |
| Ama87I | CYCGRG | 3 cut(s) | 342, 475, 606 |
| AoxI | GGCC | 6 cut(s) | 72, 204, 339, 453, 493, 569 |
| ApaI | GGGCCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 5 cut(s) | 181, 263, 269, 461, 480 |
| Asp718I | GGTACC | 1 cut(s) | 578 |
| AspLEI | GCGC | 2 cut(s) | 562, 640 |
| AspS9I | GGNCC | 6 cut(s) | 339, 340, 454, 494, 513, 612 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| AvaI | CYCGRG | 3 cut(s) | 342, 475, 606 |
| AvaII | GGWCC | 2 cut(s) | 513, 612 |
| AxyI | CCTNAGG | 1 cut(s) | 242 |
| BaeGI | GKGCMC | 1 cut(s) | 343 |
| BanI | GGYRCC | 2 cut(s) | 374, 578 |
| BanII | GRGCYC | 1 cut(s) | 343 |
| BbrPI | CACGTG | 1 cut(s) | 542 |
| BbsI | GAAGAC | 1 cut(s) | 317 |
| BbvI | GCAGC | 5 cut(s) | 193, 250, 281, 448, 492 |
| BccI | CCATC | 3 cut(s) | 83, 196, 569 |
| BciT130I | CCWGG | 1 cut(s) | 554 |
| BcoDI | GTCTC | 3 cut(s) | 112, 431, 581 |
| BfmI | CTRYAG | 2 cut(s) | 137, 462 |
| BfuAI | ACCTGC | 1 cut(s) | 455 |
| BmcAI | AGTACT | 1 cut(s) | 259 |
| Bme1390I | CCNGG | 1 cut(s) | 554 |
| Bme18I | GGWCC | 2 cut(s) | 513, 612 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 594 |
| BmeT110I | CYCGRG | 3 cut(s) | 342, 475, 606 |
| BmgT120I | GGNCC | 6 cut(s) | 339, 340, 454, 494, 513, 612 |
| BmiI | GGNNCC | 8 cut(s) | 340, 341, 376, 456, 514, 515, 580, 613 |
| BmrFI | CCNGG | 1 cut(s) | 554 |
| BmrI | ACTGGG | 1 cut(s) | 588 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BmuI | ACTGGG | 1 cut(s) | 588 |
| BoxI | GACNNNNGTC | 1 cut(s) | 443 |
| BpiI | GAAGAC | 1 cut(s) | 317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BsaAI | YACGTR | 1 cut(s) | 542 |
| BsaHI | GRCGYC | 1 cut(s) | 395 |
| BsaI | GGTCTC | 1 cut(s) | 581 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 55, 321 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 81, 139, 198, 243, 244, 464 |
| Bse118I | RCCGGY | 3 cut(s) | 272, 415, 451 |
| Bse1I | ACTGG | 1 cut(s) | 594 |
| Bse21I | CCTNAGG | 1 cut(s) | 242 |
| BseBI | CCWGG | 1 cut(s) | 554 |
| BseDI | CCNNGG | 3 cut(s) | 27, 55, 321 |
| BseGI | GGATG | 3 cut(s) | 55, 207, 580 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 81, 139, 198, 243, 244, 464 |
| BseMII | CTCAG | 2 cut(s) | 233, 411 |
| BseNI | ACTGG | 1 cut(s) | 594 |
| BseSI | GKGCMC | 1 cut(s) | 343 |
| BseX3I | CGGCCG | 1 cut(s) | 569 |
| BseXI | GCAGC | 5 cut(s) | 193, 250, 281, 448, 492 |
| BseYI | CCCAGC | 4 cut(s) | 220, 335, 457, 516 |
| BsgI | GTGCAG | 1 cut(s) | 200 |
| Bsh1236I | CGCG | 3 cut(s) | 57, 105, 638 |
| Bsh1285I | CGRYCG | 3 cut(s) | 572, 632, 636 |
| BshFI | GGCC | 6 cut(s) | 74, 206, 341, 455, 495, 571 |
| BshNI | GGYRCC | 2 cut(s) | 374, 578 |
| BsiEI | CGRYCG | 3 cut(s) | 572, 632, 636 |
| BsiHKCI | CYCGRG | 3 cut(s) | 342, 475, 606 |
| BsiSI | CCGG | 6 cut(s) | 273, 416, 434, 452, 546, 572 |
| BslFI | GGGAC | 3 cut(s) | 98, 413, 499 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 81, 139, 198, 243, 244, 464 |
| BsmAI | GTCTC | 3 cut(s) | 112, 431, 581 |
| BsmBI | CGTCTC | 1 cut(s) | 112 |
| BsmFI | GGGAC | 3 cut(s) | 98, 413, 499 |
| BsnI | GGCC | 6 cut(s) | 74, 206, 341, 455, 495, 571 |
| Bso31I | GGTCTC | 1 cut(s) | 581 |
| BsoBI | CYCGRG | 3 cut(s) | 342, 475, 606 |
| Bsp120I | GGGCCC | 1 cut(s) | 339 |
| Bsp1286I | GDGCHC | 1 cut(s) | 343 |
| Bsp143I | GATC | 3 cut(s) | 126, 616, 629 |
| BspANI | GGCC | 6 cut(s) | 74, 206, 341, 455, 495, 571 |
| BspCNI | CTCAG | 2 cut(s) | 234, 412 |
| BspFNI | CGCG | 3 cut(s) | 57, 105, 638 |
| BspLI | GGNNCC | 8 cut(s) | 340, 341, 376, 456, 514, 515, 580, 613 |
| BspMAI | CTGCAG | 2 cut(s) | 141, 466 |
| BspMI | ACCTGC | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 2 cut(s) | 374, 578 |
| BspTNI | GGTCTC | 1 cut(s) | 581 |
| BsrBI | CCGCTC | 1 cut(s) | 145 |
| BsrFI | RCCGGY | 3 cut(s) | 272, 415, 451 |
| BsrI | ACTGG | 1 cut(s) | 594 |
| BssAI | RCCGGY | 3 cut(s) | 272, 415, 451 |
| BssECI | CCNNGG | 3 cut(s) | 27, 55, 321 |
| BssMI | GATC | 3 cut(s) | 126, 616, 629 |
| BssNI | GRCGYC | 1 cut(s) | 395 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 554 |
| BstACI | GRCGYC | 1 cut(s) | 395 |
| BstBAI | YACGTR | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 6 cut(s) | 55, 62, 417, 453, 564, 625 |
| BstDEI | CTNAG | 3 cut(s) | 156, 242, 420 |
| BstDSI | CCRYGG | 1 cut(s) | 55 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 137 |
| BstF5I | GGATG | 3 cut(s) | 55, 207, 580 |
| BstFNI | CGCG | 3 cut(s) | 57, 105, 638 |
| BstHHI | GCGC | 2 cut(s) | 562, 640 |
| BstKTI | GATC | 3 cut(s) | 129, 619, 632 |
| BstMAI | GTCTC | 3 cut(s) | 112, 431, 581 |
| BstMBI | GATC | 3 cut(s) | 126, 616, 629 |
| BstMCI | CGRYCG | 3 cut(s) | 572, 632, 636 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 269, 332, 461, 568 |
| BstNI | CCWGG | 1 cut(s) | 554 |
| BstNSI | RCATGY | 1 cut(s) | 361 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 443 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 552 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 462 |
| BstSLI | GKGCMC | 1 cut(s) | 343 |
| BstUI | CGCG | 3 cut(s) | 57, 105, 638 |
| BstV1I | GCAGC | 5 cut(s) | 193, 250, 281, 448, 492 |
| BstV2I | GAAGAC | 1 cut(s) | 317 |
| BstZI | CGGCCG | 1 cut(s) | 569 |
| Bsu36I | CCTNAGG | 1 cut(s) | 242 |
| BsuRI | GGCC | 6 cut(s) | 74, 206, 341, 455, 495, 571 |
| BtgI | CCRYGG | 1 cut(s) | 55 |
| BtsCI | GGATG | 3 cut(s) | 55, 207, 580 |
| BtsIMutI | CAGTG | 1 cut(s) | 314 |
| BveI | ACCTGC | 1 cut(s) | 455 |
| Cac8I | GCNNGC | 6 cut(s) | 55, 62, 417, 453, 564, 625 |
| CaiI | CAGNNNCTG | 1 cut(s) | 22 |
| CfoI | GCGC | 2 cut(s) | 562, 640 |
| Cfr10I | RCCGGY | 3 cut(s) | 272, 415, 451 |
| Cfr13I | GGNCC | 6 cut(s) | 339, 340, 454, 494, 513, 612 |
| Cfr42I | CCGCGG | 1 cut(s) | 58 |
| CseI | GACGC | 2 cut(s) | 94, 384 |
| Csp6I | GTAC | 4 cut(s) | 258, 410, 468, 579 |
| CviAII | CATG | 2 cut(s) | 68, 358 |
| CviQI | GTAC | 4 cut(s) | 258, 410, 468, 579 |
| DdeI | CTNAG | 3 cut(s) | 156, 242, 420 |
| DpnI | GATC | 3 cut(s) | 128, 618, 631 |
| DpnII | GATC | 3 cut(s) | 126, 616, 629 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 511 |
| DriI | GACNNNNNGTC | 1 cut(s) | 594 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 511 |
| EaeI | YGGCCR | 3 cut(s) | 72, 204, 569 |
| EagI | CGGCCG | 1 cut(s) | 569 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 594 |
| EciI | GGCGGA | 3 cut(s) | 20, 47, 181 |
| EclXI | CGGCCG | 1 cut(s) | 569 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco24I | GRGCYC | 1 cut(s) | 343 |
| Eco31I | GGTCTC | 1 cut(s) | 581 |
| Eco47I | GGWCC | 2 cut(s) | 513, 612 |
| Eco52I | CGGCCG | 1 cut(s) | 569 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| Eco72I | CACGTG | 1 cut(s) | 542 |
| Eco81I | CCTNAGG | 1 cut(s) | 242 |
| Eco88I | CYCGRG | 3 cut(s) | 342, 475, 606 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 137 |
| EcoO109I | RGGNCCY | 2 cut(s) | 339, 513 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| EcoT38I | GRGCYC | 1 cut(s) | 343 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| Esp3I | CGTCTC | 1 cut(s) | 112 |
| FaeI | CATG | 2 cut(s) | 71, 361 |
| FaiI | YATR | 6 cut(s) | 45, 69, 176, 353, 359, 584 |
| FaqI | GGGAC | 3 cut(s) | 98, 413, 499 |
| FatI | CATG | 2 cut(s) | 67, 357 |
| FauI | CCCGC | 6 cut(s) | 62, 75, 177, 245, 438, 476 |
| FokI | GGATG | 3 cut(s) | 62, 214, 587 |
| FriOI | GRGCYC | 1 cut(s) | 343 |
| GlaI | GCGC | 2 cut(s) | 561, 639 |
| GsaI | CCCAGC | 4 cut(s) | 224, 339, 461, 520 |
| HaeIII | GGCC | 6 cut(s) | 74, 206, 341, 455, 495, 571 |
| HapII | CCGG | 6 cut(s) | 273, 416, 434, 452, 546, 572 |
| HgaI | GACGC | 2 cut(s) | 94, 384 |
| HhaI | GCGC | 2 cut(s) | 562, 640 |
| Hin1I | GRCGYC | 1 cut(s) | 395 |
| Hin1II | CATG | 2 cut(s) | 71, 361 |
| Hin6I | GCGC | 2 cut(s) | 560, 638 |
| HinP1I | GCGC | 2 cut(s) | 560, 638 |
| HinfI | GANTC | 3 cut(s) | 188, 523, 549 |
| HpaII | CCGG | 6 cut(s) | 273, 416, 434, 452, 546, 572 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy188I | TCNGA | 4 cut(s) | 504, 532, 600, 616 |
| Hpy188III | TCNNGA | 1 cut(s) | 307 |
| Hpy99I | CGWCG | 1 cut(s) | 532 |
| HpyAV | CCTTC | 5 cut(s) | 143, 245, 325, 364, 503 |
| HpyCH4IV | ACGT | 2 cut(s) | 408, 541 |
| HpyCH4V | TGCA | 4 cut(s) | 139, 181, 389, 464 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 269, 332, 461, 568 |
| HpyF3I | CTNAG | 3 cut(s) | 156, 242, 420 |
| HpySE526I | ACGT | 2 cut(s) | 408, 541 |
| Hsp92I | GRCGYC | 1 cut(s) | 395 |
| Hsp92II | CATG | 2 cut(s) | 71, 361 |
| HspAI | GCGC | 2 cut(s) | 560, 638 |
| KflI | GGGWCCC | 1 cut(s) | 513 |
| KpnI | GGTACC | 1 cut(s) | 582 |
| KroI | GCCGGC | 2 cut(s) | 415, 451 |
| KroNI | GCCGGC | 2 cut(s) | 417, 453 |
| KspI | CCGCGG | 1 cut(s) | 58 |
| Kzo9I | GATC | 3 cut(s) | 126, 616, 629 |
| LmnI | GCTCC | 4 cut(s) | 69, 91, 118, 142 |
| Lsp1109I | GCAGC | 5 cut(s) | 193, 250, 281, 448, 492 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeII | ACGT | 2 cut(s) | 408, 541 |
| MaeIII | GTNAC | 3 cut(s) | 232, 396, 537 |
| MalI | GATC | 3 cut(s) | 128, 618, 631 |
| MbiI | CCGCTC | 1 cut(s) | 145 |
| MboI | GATC | 3 cut(s) | 126, 616, 629 |
| MboII | GAAGA | 2 cut(s) | 322, 671 |
| MhlI | GDGCHC | 1 cut(s) | 343 |
| MluI | ACGCGT | 1 cut(s) | 103 |
| MlyI | GAGTC | 2 cut(s) | 197, 517 |
| MmeI | TCCRAC | 3 cut(s) | 96, 510, 623 |
| MnlI | CCTC | 6 cut(s) | 223, 237, 316, 436, 526, 602 |
| MroNI | GCCGGC | 2 cut(s) | 415, 451 |
| MspA1I | CMGCKG | 5 cut(s) | 57, 184, 461, 483, 678 |
| MspI | CCGG | 6 cut(s) | 273, 416, 434, 452, 546, 572 |
| MspR9I | CCNGG | 1 cut(s) | 554 |
| MvaI | CCWGG | 1 cut(s) | 554 |
| MvnI | CGCG | 3 cut(s) | 57, 105, 638 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 269, 332, 461, 568 |
| NaeI | GCCGGC | 2 cut(s) | 417, 453 |
| NdeII | GATC | 3 cut(s) | 126, 616, 629 |
| NgoMIV | GCCGGC | 2 cut(s) | 415, 451 |
| NlaIII | CATG | 2 cut(s) | 71, 361 |
| NlaIV | GGNNCC | 8 cut(s) | 340, 341, 376, 456, 514, 515, 580, 613 |
| NmeAIII | GCCGAG | 1 cut(s) | 547 |
| NmuCI | GTSAC | 2 cut(s) | 396, 537 |
| NspI | RCATGY | 1 cut(s) | 361 |
| PaeR7I | CTCGAG | 1 cut(s) | 606 |
| PciI | ACATGT | 1 cut(s) | 357 |
| PdiI | GCCGGC | 2 cut(s) | 417, 453 |
| PfeI | GAWTC | 1 cut(s) | 549 |
| PflFI | GACNNNGTC | 1 cut(s) | 526 |
| PfoI | TCCNGGA | 1 cut(s) | 552 |
| Ple19I | CGATCG | 1 cut(s) | 632 |
| PleI | GAGTC | 2 cut(s) | 196, 517 |
| PmaCI | CACGTG | 1 cut(s) | 542 |
| PmlI | CACGTG | 1 cut(s) | 542 |
| PpsI | GAGTC | 2 cut(s) | 196, 517 |
| Ppu21I | YACGTR | 1 cut(s) | 542 |
| PpuMI | RGGWCCY | 1 cut(s) | 513 |
| PscI | ACATGT | 1 cut(s) | 357 |
| PshAI | GACNNNNGTC | 1 cut(s) | 443 |
| Psp5II | RGGWCCY | 1 cut(s) | 513 |
| Psp6I | CCWGG | 1 cut(s) | 552 |
| PspCI | CACGTG | 1 cut(s) | 542 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspFI | CCCAGC | 4 cut(s) | 220, 335, 457, 516 |
| PspGI | CCWGG | 1 cut(s) | 552 |
| PspN4I | GGNNCC | 8 cut(s) | 340, 341, 376, 456, 514, 515, 580, 613 |
| PspOMI | GGGCCC | 1 cut(s) | 339 |
| PspPI | GGNCC | 6 cut(s) | 339, 340, 454, 494, 513, 612 |
| PspPPI | RGGWCCY | 1 cut(s) | 513 |
| PspXI | VCTCGAGB | 1 cut(s) | 606 |
| PstI | CTGCAG | 2 cut(s) | 141, 466 |
| PstNI | CAGNNNCTG | 1 cut(s) | 22 |
| PsyI | GACNNNGTC | 1 cut(s) | 526 |
| PvuI | CGATCG | 1 cut(s) | 632 |
| PvuII | CAGCTG | 1 cut(s) | 461 |
| RsaI | GTAC | 4 cut(s) | 259, 411, 469, 580 |
| RsaNI | GTAC | 4 cut(s) | 258, 410, 468, 579 |
| SacII | CCGCGG | 1 cut(s) | 58 |
| Sau3AI | GATC | 3 cut(s) | 126, 616, 629 |
| Sau96I | GGNCC | 6 cut(s) | 339, 340, 454, 494, 513, 612 |
| ScaI | AGTACT | 1 cut(s) | 259 |
| SchI | GAGTC | 2 cut(s) | 197, 517 |
| ScrFI | CCNGG | 1 cut(s) | 554 |
| SduI | GDGCHC | 1 cut(s) | 343 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SfcI | CTRYAG | 2 cut(s) | 137, 462 |
| Sfr274I | CTCGAG | 1 cut(s) | 606 |
| Sfr303I | CCGCGG | 1 cut(s) | 58 |
| SgrBI | CCGCGG | 1 cut(s) | 58 |
| SinI | GGWCC | 2 cut(s) | 513, 612 |
| SlaI | CTCGAG | 1 cut(s) | 606 |
| SmlI | CTYRAG | 1 cut(s) | 606 |
| SmoI | CTYRAG | 1 cut(s) | 606 |
| StyD4I | CCNGG | 1 cut(s) | 552 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaiI | ACGT | 2 cut(s) | 411, 544 |
| TaqI | TCGA | 3 cut(s) | 12, 607, 666 |
| TaqII | GACCGA | 2 cut(s) | 335, 622 |
| TatI | WGTACW | 1 cut(s) | 257 |
| TauI | GCSGC | 8 cut(s) | 60, 74, 155, 220, 269, 329, 643, 646 |
| TfiI | GAWTC | 1 cut(s) | 549 |
| TscAI | CASTG | 1 cut(s) | 321 |
| TseFI | GTSAC | 2 cut(s) | 396, 537 |
| TseI | GCWGC | 5 cut(s) | 181, 263, 269, 461, 480 |
| Tsp45I | GTSAC | 2 cut(s) | 396, 537 |
| TspDTI | ATGAA | 1 cut(s) | 114 |
| TspGWI | ACGGA | 2 cut(s) | 516, 521 |
| TspRI | CASTG | 1 cut(s) | 321 |
| Tth111I | GACNNNGTC | 1 cut(s) | 526 |
| VpaK11BI | GGWCC | 2 cut(s) | 513, 612 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 137 |
| XceI | RCATGY | 1 cut(s) | 361 |
| XhoI | CTCGAG | 1 cut(s) | 606 |
| ZrmI | AGTACT | 1 cut(s) | 259 |