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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 664 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 883, 1048, 1951 |
| AatII | GACGTC | 1 cut(s) | 65 |
| Acc36I | ACCTGC | 2 cut(s) | 447, 664 |
| AccB1I | GGYRCC | 3 cut(s) | 1153, 1814, 2018 |
| AccBSI | CCGCTC | 6 cut(s) | 317, 739, 1216, 1243, 1456, 1585 |
| AccI | GTMKAC | 5 cut(s) | 28, 44, 114, 435, 470 |
| AccII | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| AclWI | GGATC | 5 cut(s) | 374, 513, 708, 2046, 2059 |
| AcoI | YGGCCR | 5 cut(s) | 690, 720, 1512, 1644, 1857 |
| AcsI | RAATTY | 2 cut(s) | 148, 523 |
| AcuI | CTGAAG | 1 cut(s) | 1288 |
| AcvI | CACGTG | 1 cut(s) | 1982 |
| AcyI | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| AfaI | GTAC | 4 cut(s) | 251, 329, 542, 1699 |
| AfeI | AGCGCT | 1 cut(s) | 715 |
| AflIII | ACRYGT | 2 cut(s) | 486, 1797 |
| AgsI | TTSAA | 4 cut(s) | 1721, 1729, 1804, 2093 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 202, 2034 |
| AjiI | CACGTC | 2 cut(s) | 1546, 1849 |
| AjnI | CCWGG | 3 cut(s) | 357, 803, 1527 |
| AleI | CACNNNNGTG | 1 cut(s) | 84 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1205, 1237 |
| AluBI | AGCT | 9 cut(s) | 178, 1308, 1387, 1504, 1609, 1660, 1688, 1901, 2045 |
| AluI | AGCT | 9 cut(s) | 178, 1308, 1387, 1504, 1609, 1660, 1688, 1901, 2045 |
| Alw21I | GWGCWC | 3 cut(s) | 81, 1389, 1545 |
| Alw44I | GTGCAC | 1 cut(s) | 77 |
| AlwI | GGATC | 5 cut(s) | 374, 513, 708, 2046, 2059 |
| Ama87I | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| Aor51HI | AGCGCT | 1 cut(s) | 715 |
| ApaI | GGGCCC | 4 cut(s) | 931, 1096, 1280, 1783 |
| ApaLI | GTGCAC | 1 cut(s) | 77 |
| ApoI | RAATTY | 2 cut(s) | 148, 523 |
| AsuC2I | CCSGG | 7 cut(s) | 724, 1372, 1783, 1784, 1871, 2008, 2009 |
| AsuHPI | GGTGA | 5 cut(s) | 473, 631, 662, 838, 1679 |
| AsuII | TTCGAA | 2 cut(s) | 962, 1127 |
| AsuNHI | GCTAGC | 1 cut(s) | 553 |
| AvaI | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| AvaII | GGWCC | 8 cut(s) | 219, 681, 761, 834, 999, 1525, 1907, 1953 |
| BaeGI | GKGCMC | 5 cut(s) | 81, 931, 1096, 1280, 1783 |
| BamHI | GGATCC | 1 cut(s) | 2051 |
| BanI | GGYRCC | 3 cut(s) | 1153, 1814, 2018 |
| BanII | GRGCYC | 5 cut(s) | 931, 1096, 1280, 1389, 1783 |
| BauI | CACGAG | 1 cut(s) | 1349 |
| BbrPI | CACGTG | 1 cut(s) | 1982 |
| BbsI | GAAGAC | 1 cut(s) | 1757 |
| Bbv12I | GWGCWC | 3 cut(s) | 81, 1389, 1545 |
| BbvCI | CCTCAGC | 1 cut(s) | 1689 |
| BccI | CCATC | 3 cut(s) | 496, 1523, 1636 |
| BceAI | ACGGC | 4 cut(s) | 705, 1145, 1299, 2032 |
| BciT130I | CCWGG | 3 cut(s) | 359, 805, 1529 |
| BcnI | CCSGG | 7 cut(s) | 724, 1372, 1783, 1784, 1871, 2008, 2009 |
| BfaI | CTAG | 1 cut(s) | 554 |
| BfmI | CTRYAG | 4 cut(s) | 133, 570, 1577, 1902 |
| BfuAI | ACCTGC | 2 cut(s) | 447, 664 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 953, 1118 |
| BlpI | GCTNAGC | 2 cut(s) | 596, 1309 |
| Bme18I | GGWCC | 8 cut(s) | 219, 681, 761, 834, 999, 1525, 1907, 1953 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 202, 2034 |
| BmeT110I | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| BmgBI | CACGTC | 2 cut(s) | 1546, 1849 |
| BmrI | ACTGGG | 1 cut(s) | 2028 |
| BmsI | GCATC | 2 cut(s) | 612, 732 |
| BmtI | GCTAGC | 1 cut(s) | 557 |
| BmuI | ACTGGG | 1 cut(s) | 2028 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1883 |
| BpiI | GAAGAC | 1 cut(s) | 1757 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1532, 1564 |
| BpmI | CTGGAG | 5 cut(s) | 881, 1046, 1394, 1550, 2015 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1388, 1689 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 596, 1309 |
| Bpu14I | TTCGAA | 2 cut(s) | 962, 1127 |
| BpuMI | CCSGG | 7 cut(s) | 724, 1372, 1783, 1784, 1871, 2008, 2009 |
| BsaAI | YACGTR | 2 cut(s) | 118, 1982 |
| BsaHI | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| BsaI | GGTCTC | 3 cut(s) | 6, 1412, 2021 |
| BsaJI | CCNNGG | 8 cut(s) | 127, 546, 606, 804, 1370, 1495, 1782, 2007 |
| BsaWI | WCCGGW | 2 cut(s) | 15, 613 |
| Bse118I | RCCGGY | 5 cut(s) | 159, 692, 781, 982, 1855 |
| Bse1I | ACTGG | 6 cut(s) | 421, 601, 637, 818, 1446, 2034 |
| BseBI | CCWGG | 3 cut(s) | 359, 805, 1529 |
| BseDI | CCNNGG | 8 cut(s) | 127, 546, 606, 804, 1370, 1495, 1782, 2007 |
| BseGI | GGATG | 4 cut(s) | 747, 1515, 1647, 1939 |
| BseMII | CTCAG | 7 cut(s) | 96, 288, 587, 1323, 1402, 1673, 1680 |
| BseNI | ACTGG | 6 cut(s) | 421, 601, 637, 818, 1446, 2034 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseSI | GKGCMC | 5 cut(s) | 81, 931, 1096, 1280, 1783 |
| BseX3I | CGGCCG | 3 cut(s) | 690, 720, 1857 |
| BseYI | CCCAGC | 7 cut(s) | 561, 842, 1007, 1246, 1660, 1897, 1956 |
| BsgI | GTGCAG | 1 cut(s) | 1640 |
| Bsh1236I | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| Bsh1285I | CGRYCG | 6 cut(s) | 69, 693, 723, 1860, 2072, 2076 |
| BshNI | GGYRCC | 3 cut(s) | 1153, 1814, 2018 |
| BsiEI | CGRYCG | 6 cut(s) | 69, 693, 723, 1860, 2072, 2076 |
| BsiHKAI | GWGCWC | 3 cut(s) | 81, 1389, 1545 |
| BsiHKCI | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| BslFI | GGGAC | 7 cut(s) | 209, 232, 333, 694, 1538, 1853, 1939 |
| BsmBI | CGTCTC | 3 cut(s) | 53, 578, 1552 |
| BsmFI | GGGAC | 7 cut(s) | 209, 232, 333, 694, 1538, 1853, 1939 |
| Bso31I | GGTCTC | 3 cut(s) | 6, 1412, 2021 |
| BsoBI | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| Bsp119I | TTCGAA | 2 cut(s) | 962, 1127 |
| Bsp120I | GGGCCC | 4 cut(s) | 927, 1092, 1276, 1779 |
| Bsp1286I | GDGCHC | 7 cut(s) | 81, 931, 1096, 1280, 1389, 1545, 1783 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 596, 1309 |
| Bsp68I | TCGCGA | 1 cut(s) | 483 |
| BspCNI | CTCAG | 7 cut(s) | 97, 289, 588, 1322, 1401, 1674, 1681 |
| BspFNI | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| BspHI | TCATGA | 1 cut(s) | 1200 |
| BspMAI | CTGCAG | 2 cut(s) | 137, 1581 |
| BspMI | ACCTGC | 2 cut(s) | 447, 664 |
| BspOI | GCTAGC | 1 cut(s) | 557 |
| BspPI | GGATC | 5 cut(s) | 374, 513, 708, 2046, 2059 |
| BspQI | GCTCTTC | 1 cut(s) | 1377 |
| BspT104I | TTCGAA | 2 cut(s) | 962, 1127 |
| BspT107I | GGYRCC | 3 cut(s) | 1153, 1814, 2018 |
| BspTNI | GGTCTC | 3 cut(s) | 6, 1412, 2021 |
| BsrBI | CCGCTC | 6 cut(s) | 317, 739, 1216, 1243, 1456, 1585 |
| BsrFI | RCCGGY | 5 cut(s) | 159, 692, 781, 982, 1855 |
| BsrI | ACTGG | 6 cut(s) | 421, 601, 637, 818, 1446, 2034 |
| BssAI | RCCGGY | 5 cut(s) | 159, 692, 781, 982, 1855 |
| BssECI | CCNNGG | 8 cut(s) | 127, 546, 606, 804, 1370, 1495, 1782, 2007 |
| BssNAI | GTATAC | 2 cut(s) | 45, 115 |
| BssNI | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| BssSI | CACGAG | 1 cut(s) | 1349 |
| Bst1107I | GTATAC | 2 cut(s) | 45, 115 |
| Bst2BI | CACGAG | 1 cut(s) | 1349 |
| Bst2UI | CCWGG | 3 cut(s) | 359, 805, 1529 |
| Bst4CI | ACNGT | 7 cut(s) | 76, 86, 242, 571, 880, 1045, 1141 |
| Bst6I | CTCTTC | 5 cut(s) | 342, 894, 1059, 1232, 1377 |
| BstACI | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| BstBAI | YACGTR | 2 cut(s) | 118, 1982 |
| BstBI | TTCGAA | 2 cut(s) | 962, 1127 |
| BstDEI | CTNAG | 8 cut(s) | 105, 191, 297, 596, 1309, 1388, 1682, 1689 |
| BstDSI | CCRYGG | 1 cut(s) | 1495 |
| BstEII | GGTNACC | 1 cut(s) | 1672 |
| BstF5I | GGATG | 4 cut(s) | 747, 1515, 1647, 1939 |
| BstFNI | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| BstMCI | CGRYCG | 6 cut(s) | 69, 693, 723, 1860, 2072, 2076 |
| BstNI | CCWGG | 3 cut(s) | 359, 805, 1529 |
| BstNSI | RCATGY | 1 cut(s) | 1801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1883 |
| BstPI | GGTNACC | 1 cut(s) | 1672 |
| BstSFI | CTRYAG | 4 cut(s) | 133, 570, 1577, 1902 |
| BstSLI | GKGCMC | 5 cut(s) | 81, 931, 1096, 1280, 1783 |
| BstUI | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| BstV2I | GAAGAC | 1 cut(s) | 1757 |
| BstX2I | RGATCY | 1 cut(s) | 2051 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 758 |
| BstYI | RGATCY | 1 cut(s) | 2051 |
| BstZ17I | GTATAC | 2 cut(s) | 45, 115 |
| BstZI | CGGCCG | 3 cut(s) | 690, 720, 1857 |
| BtgI | CCRYGG | 1 cut(s) | 1495 |
| BtgZI | GCGATG | 1 cut(s) | 515 |
| BtrI | CACGTC | 2 cut(s) | 1546, 1849 |
| BtsCI | GGATG | 4 cut(s) | 747, 1515, 1647, 1939 |
| BtsIMutI | CAGTG | 2 cut(s) | 102, 1171 |
| BtuMI | TCGCGA | 1 cut(s) | 483 |
| BveI | ACCTGC | 2 cut(s) | 447, 664 |
| CciI | TCATGA | 1 cut(s) | 1200 |
| Cfr10I | RCCGGY | 5 cut(s) | 159, 692, 781, 982, 1855 |
| Cfr42I | CCGCGG | 1 cut(s) | 1498 |
| Cfr9I | CCCGGG | 2 cut(s) | 1782, 2007 |
| CseI | GACGC | 4 cut(s) | 494, 1347, 1499, 1824 |
| Csp6I | GTAC | 4 cut(s) | 250, 328, 541, 1698 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 91, 126, 657, 692 |
| CviAII | CATG | 3 cut(s) | 538, 1201, 1798 |
| CviQI | GTAC | 4 cut(s) | 250, 328, 541, 1698 |
| DdeI | CTNAG | 8 cut(s) | 105, 191, 297, 596, 1309, 1388, 1682, 1689 |
| DinI | GGCGCC | 2 cut(s) | 1155, 1816 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 883, 1048, 1951 |
| DriI | GACNNNNNGTC | 2 cut(s) | 202, 2034 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 883, 1048, 1951 |
| EaeI | YGGCCR | 5 cut(s) | 690, 720, 1512, 1644, 1857 |
| EagI | CGGCCG | 3 cut(s) | 690, 720, 1857 |
| Eam1104I | CTCTTC | 5 cut(s) | 342, 894, 1059, 1232, 1377 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 202, 2034 |
| EarI | CTCTTC | 5 cut(s) | 342, 894, 1059, 1232, 1377 |
| Ecl136II | GAGCTC | 1 cut(s) | 1387 |
| EclXI | CGGCCG | 3 cut(s) | 690, 720, 1857 |
| Eco24I | GRGCYC | 5 cut(s) | 931, 1096, 1280, 1389, 1783 |
| Eco31I | GGTCTC | 3 cut(s) | 6, 1412, 2021 |
| Eco47I | GGWCC | 8 cut(s) | 219, 681, 761, 834, 999, 1525, 1907, 1953 |
| Eco47III | AGCGCT | 1 cut(s) | 715 |
| Eco52I | CGGCCG | 3 cut(s) | 690, 720, 1857 |
| Eco53kI | GAGCTC | 1 cut(s) | 1387 |
| Eco57I | CTGAAG | 1 cut(s) | 1288 |
| Eco72I | CACGTG | 1 cut(s) | 1982 |
| Eco88I | CYCGRG | 4 cut(s) | 581, 1782, 2007, 2046 |
| Eco91I | GGTNACC | 1 cut(s) | 1672 |
| EcoICRI | GAGCTC | 1 cut(s) | 1387 |
| EcoO109I | RGGNCCY | 8 cut(s) | 219, 681, 927, 1092, 1525, 1779, 1907, 1953 |
| EcoO65I | GGTNACC | 1 cut(s) | 1672 |
| EcoRII | CCWGG | 3 cut(s) | 357, 803, 1527 |
| EcoT38I | GRGCYC | 5 cut(s) | 931, 1096, 1280, 1389, 1783 |
| EgeI | GGCGCC | 2 cut(s) | 1155, 1816 |
| EheI | GGCGCC | 2 cut(s) | 1155, 1816 |
| Esp3I | CGTCTC | 3 cut(s) | 53, 578, 1552 |
| FaeI | CATG | 3 cut(s) | 541, 1204, 1801 |
| FaqI | GGGAC | 7 cut(s) | 209, 232, 333, 694, 1538, 1853, 1939 |
| FatI | CATG | 3 cut(s) | 537, 1200, 1797 |
| FblI | GTMKAC | 5 cut(s) | 28, 44, 114, 435, 470 |
| FokI | GGATG | 4 cut(s) | 754, 1502, 1654, 1926 |
| FriOI | GRGCYC | 5 cut(s) | 931, 1096, 1280, 1389, 1783 |
| FspBI | CTAG | 1 cut(s) | 554 |
| GsaI | CCCAGC | 7 cut(s) | 565, 846, 1011, 1250, 1664, 1901, 1960 |
| GsuI | CTGGAG | 5 cut(s) | 881, 1046, 1394, 1550, 2015 |
| HgaI | GACGC | 4 cut(s) | 494, 1347, 1499, 1824 |
| Hin1I | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| Hin1II | CATG | 3 cut(s) | 541, 1204, 1801 |
| HincII | GTYRAC | 1 cut(s) | 436 |
| HindII | GTYRAC | 1 cut(s) | 436 |
| HindIII | AAGCTT | 1 cut(s) | 1502 |
| HinfI | GANTC | 9 cut(s) | 25, 154, 187, 197, 467, 884, 1049, 1175, 1628 |
| HphI | GGTGA | 5 cut(s) | 473, 631, 662, 838, 1679 |
| Hpy166II | GTNNAC | 7 cut(s) | 29, 45, 79, 115, 436, 471, 577 |
| Hpy188I | TCNGA | 9 cut(s) | 11, 298, 607, 705, 1403, 1944, 1972, 2040, 2056 |
| Hpy188III | TCNNGA | 8 cut(s) | 184, 482, 890, 1055, 1172, 1201, 1411, 1994 |
| Hpy8I | GTNNAC | 7 cut(s) | 29, 45, 79, 115, 436, 471, 577 |
| HpyCH4III | ACNGT | 7 cut(s) | 76, 86, 242, 571, 880, 1045, 1141 |
| HpyCH4IV | ACGT | 6 cut(s) | 62, 117, 587, 1545, 1848, 1981 |
| HpyCH4V | TGCA | 6 cut(s) | 79, 99, 135, 673, 1579, 1621 |
| HpyF3I | CTNAG | 8 cut(s) | 105, 191, 297, 596, 1309, 1388, 1682, 1689 |
| HpySE526I | ACGT | 6 cut(s) | 62, 117, 587, 1545, 1848, 1981 |
| Hsp92I | GRCGYC | 6 cut(s) | 62, 1154, 1358, 1491, 1815, 1835 |
| Hsp92II | CATG | 3 cut(s) | 541, 1204, 1801 |
| KasI | GGCGCC | 2 cut(s) | 1153, 1814 |
| KflI | GGGWCCC | 2 cut(s) | 681, 1953 |
| KroI | GCCGGC | 4 cut(s) | 159, 692, 781, 1855 |
| KroNI | GCCGGC | 4 cut(s) | 161, 694, 783, 1857 |
| KspI | CCGCGG | 1 cut(s) | 1498 |
| LguI | GCTCTTC | 1 cut(s) | 1377 |
| LweI | GCATC | 2 cut(s) | 612, 732 |
| MaeI | CTAG | 1 cut(s) | 554 |
| MaeII | ACGT | 6 cut(s) | 62, 117, 587, 1545, 1848, 1981 |
| MaeIII | GTNAC | 6 cut(s) | 70, 799, 826, 1672, 1836, 1977 |
| MbiI | CCGCTC | 6 cut(s) | 317, 739, 1216, 1243, 1456, 1585 |
| MfeI | CAATTG | 1 cut(s) | 1287 |
| MflI | RGATCY | 1 cut(s) | 2051 |
| MhlI | GDGCHC | 7 cut(s) | 81, 931, 1096, 1280, 1389, 1545, 1783 |
| MluCI | AATT | 3 cut(s) | 148, 523, 1287 |
| MluI | ACGCGT | 1 cut(s) | 486 |
| Mly113I | GGCGCC | 2 cut(s) | 1154, 1815 |
| MlyI | GAGTC | 8 cut(s) | 34, 163, 191, 476, 893, 1058, 1169, 1637 |
| MmeI | TCCRAC | 5 cut(s) | 328, 1536, 1950, 1967, 2063 |
| MroNI | GCCGGC | 4 cut(s) | 159, 692, 781, 1855 |
| MseI | TTAA | 3 cut(s) | 291, 1506, 1746 |
| MslI | CAYNNNNRTG | 3 cut(s) | 84, 648, 1616 |
| MspA1I | CMGCKG | 9 cut(s) | 842, 1007, 1497, 1624, 1660, 1703, 1901, 1923, 2118 |
| MunI | CAATTG | 1 cut(s) | 1287 |
| MvaI | CCWGG | 3 cut(s) | 359, 805, 1529 |
| MvnI | CGCG | 6 cut(s) | 340, 342, 483, 488, 1497, 1571 |
| NaeI | GCCGGC | 4 cut(s) | 161, 694, 783, 1857 |
| NarI | GGCGCC | 2 cut(s) | 1154, 1815 |
| NciI | CCSGG | 7 cut(s) | 724, 1372, 1783, 1784, 1871, 2008, 2009 |
| NgoMIV | GCCGGC | 4 cut(s) | 159, 692, 781, 1855 |
| NheI | GCTAGC | 1 cut(s) | 553 |
| NlaIII | CATG | 3 cut(s) | 541, 1204, 1801 |
| NmeAIII | GCCGAG | 4 cut(s) | 152, 571, 1210, 1885 |
| NmuCI | GTSAC | 4 cut(s) | 799, 826, 1836, 1977 |
| NruI | TCGCGA | 1 cut(s) | 483 |
| NspI | RCATGY | 1 cut(s) | 1801 |
| NspV | TTCGAA | 2 cut(s) | 962, 1127 |
| OliI | CACNNNNGTG | 1 cut(s) | 84 |
| PaeR7I | CTCGAG | 1 cut(s) | 2046 |
| PagI | TCATGA | 1 cut(s) | 1200 |
| PaqCI | CACCTGC | 1 cut(s) | 664 |
| PciI | ACATGT | 1 cut(s) | 1797 |
| PciSI | GCTCTTC | 1 cut(s) | 1377 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 968, 1133, 1347 |
| PdiI | GCCGGC | 4 cut(s) | 161, 694, 783, 1857 |
| PfeI | GAWTC | 1 cut(s) | 187 |
| PflFI | GACNNNGTC | 1 cut(s) | 1966 |
| Ple19I | CGATCG | 2 cut(s) | 69, 2072 |
| PleI | GAGTC | 8 cut(s) | 33, 162, 191, 475, 892, 1057, 1169, 1636 |
| PluTI | GGCGCC | 2 cut(s) | 1157, 1818 |
| PmaCI | CACGTG | 1 cut(s) | 1982 |
| PmlI | CACGTG | 1 cut(s) | 1982 |
| PpsI | GAGTC | 8 cut(s) | 33, 162, 191, 475, 892, 1057, 1169, 1636 |
| Ppu21I | YACGTR | 2 cut(s) | 118, 1982 |
| PpuMI | RGGWCCY | 5 cut(s) | 219, 681, 1525, 1907, 1953 |
| PscI | ACATGT | 1 cut(s) | 1797 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1883 |
| Psp124BI | GAGCTC | 1 cut(s) | 1389 |
| Psp5II | RGGWCCY | 5 cut(s) | 219, 681, 1525, 1907, 1953 |
| Psp6I | CCWGG | 3 cut(s) | 357, 803, 1527 |
| PspCI | CACGTG | 1 cut(s) | 1982 |
| PspEI | GGTNACC | 1 cut(s) | 1672 |
| PspFI | CCCAGC | 7 cut(s) | 561, 842, 1007, 1246, 1660, 1897, 1956 |
| PspGI | CCWGG | 3 cut(s) | 357, 803, 1527 |
| PspOMI | GGGCCC | 4 cut(s) | 927, 1092, 1276, 1779 |
| PspPPI | RGGWCCY | 5 cut(s) | 219, 681, 1525, 1907, 1953 |
| PspXI | VCTCGAGB | 1 cut(s) | 2046 |
| PstI | CTGCAG | 2 cut(s) | 137, 1581 |
| PsuI | RGATCY | 1 cut(s) | 2051 |
| PsyI | GACNNNGTC | 1 cut(s) | 1966 |
| PvuI | CGATCG | 2 cut(s) | 69, 2072 |
| PvuII | CAGCTG | 2 cut(s) | 1660, 1901 |
| RruI | TCGCGA | 1 cut(s) | 483 |
| RsaI | GTAC | 4 cut(s) | 251, 329, 542, 1699 |
| RsaNI | GTAC | 4 cut(s) | 250, 328, 541, 1698 |
| RseI | CAYNNNNRTG | 3 cut(s) | 84, 648, 1616 |
| SacI | GAGCTC | 1 cut(s) | 1389 |
| SacII | CCGCGG | 1 cut(s) | 1498 |
| SalI | GTCGAC | 1 cut(s) | 434 |
| SapI | GCTCTTC | 1 cut(s) | 1377 |
| SaqAI | TTAA | 3 cut(s) | 291, 1506, 1746 |
| SchI | GAGTC | 8 cut(s) | 34, 163, 191, 476, 893, 1058, 1169, 1637 |
| SduI | GDGCHC | 7 cut(s) | 81, 931, 1096, 1280, 1389, 1545, 1783 |
| SfaNI | GCATC | 2 cut(s) | 612, 732 |
| SfcI | CTRYAG | 4 cut(s) | 133, 570, 1577, 1902 |
| SfoI | GGCGCC | 2 cut(s) | 1155, 1816 |
| Sfr274I | CTCGAG | 1 cut(s) | 2046 |
| Sfr303I | CCGCGG | 1 cut(s) | 1498 |
| SfuI | TTCGAA | 2 cut(s) | 962, 1127 |
| SgrBI | CCGCGG | 1 cut(s) | 1498 |
| SinI | GGWCC | 8 cut(s) | 219, 681, 761, 834, 999, 1525, 1907, 1953 |
| SlaI | CTCGAG | 1 cut(s) | 2046 |
| SmaI | CCCGGG | 2 cut(s) | 1784, 2009 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 84, 648, 1616 |
| SmlI | CTYRAG | 1 cut(s) | 2046 |
| SmoI | CTYRAG | 1 cut(s) | 2046 |
| SrfI | GCCCGGGC | 1 cut(s) | 1784 |
| Sse9I | AATT | 3 cut(s) | 148, 523, 1287 |
| SspDI | GGCGCC | 2 cut(s) | 1153, 1814 |
| SspMI | CTAG | 1 cut(s) | 554 |
| SstI | GAGCTC | 1 cut(s) | 1389 |
| TaaI | ACNGT | 7 cut(s) | 76, 86, 242, 571, 880, 1045, 1141 |
| TaiI | ACGT | 6 cut(s) | 65, 120, 590, 1548, 1851, 1984 |
| TaqII | GACCGA | 2 cut(s) | 1775, 2062 |
| TasI | AATT | 3 cut(s) | 148, 523, 1287 |
| TfiI | GAWTC | 1 cut(s) | 187 |
| Tru1I | TTAA | 3 cut(s) | 291, 1506, 1746 |
| Tru9I | TTAA | 3 cut(s) | 291, 1506, 1746 |
| TscAI | CASTG | 2 cut(s) | 109, 1171 |
| TseFI | GTSAC | 4 cut(s) | 799, 826, 1836, 1977 |
| Tsp45I | GTSAC | 4 cut(s) | 799, 826, 1836, 1977 |
| TspDTI | ATGAA | 2 cut(s) | 1189, 1667 |
| TspGWI | ACGGA | 3 cut(s) | 445, 989, 1961 |
| TspMI | CCCGGG | 2 cut(s) | 1782, 2007 |
| TspRI | CASTG | 2 cut(s) | 109, 1171 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1966 |
| VneI | GTGCAC | 1 cut(s) | 77 |
| VpaK11BI | GGWCC | 8 cut(s) | 219, 681, 761, 834, 999, 1525, 1907, 1953 |
| XapI | RAATTY | 2 cut(s) | 148, 523 |
| XceI | RCATGY | 1 cut(s) | 1801 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 644 |
| XhoI | CTCGAG | 1 cut(s) | 2046 |
| XmaI | CCCGGG | 2 cut(s) | 1782, 2007 |
| XmiI | GTMKAC | 5 cut(s) | 28, 44, 114, 435, 470 |
| XspI | CTAG | 1 cut(s) | 554 |
| ZraI | GACGTC | 1 cut(s) | 63 |