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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 88, 328 |
| AccII | CGCG | 2 cut(s) | 11, 59 |
| AcoI | YGGCCR | 2 cut(s) | 12, 190 |
| AcsI | RAATTY | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 62, 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 286 |
| AgsI | TTSAA | 1 cut(s) | 275 |
| AjnI | CCWGG | 1 cut(s) | 42 |
| AluBI | AGCT | 4 cut(s) | 180, 253, 271, 334 |
| AluI | AGCT | 4 cut(s) | 180, 253, 271, 334 |
| AoxI | GGCC | 3 cut(s) | 12, 183, 190 |
| ApeKI | GCWGC | 3 cut(s) | 238, 253, 331 |
| ApoI | RAATTY | 1 cut(s) | 68 |
| AspS9I | GGNCC | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AsuII | TTCGAA | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| AxyI | CCTNAGG | 1 cut(s) | 243 |
| BalI | TGGCCA | 1 cut(s) | 192 |
| BbvI | GCAGC | 3 cut(s) | 240, 250, 343 |
| BccI | CCATC | 2 cut(s) | 131, 156 |
| BceAI | ACGGC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 44 |
| BfaI | CTAG | 2 cut(s) | 119, 309 |
| BfmI | CTRYAG | 2 cut(s) | 161, 254 |
| BisI | GCNGC | 7 cut(s) | 12, 15, 57, 239, 254, 329, 332 |
| BlsI | GCNGC | 7 cut(s) | 13, 16, 58, 240, 255, 330, 333 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmgT120I | GGNCC | 1 cut(s) | 141 |
| BmiI | GGNNCC | 1 cut(s) | 142 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| Bpu14I | TTCGAA | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 339 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 286 |
| Bse1I | ACTGG | 3 cut(s) | 18, 297, 318 |
| Bse21I | CCTNAGG | 1 cut(s) | 243 |
| BseBI | CCWGG | 1 cut(s) | 44 |
| BseDI | CCNNGG | 2 cut(s) | 9, 339 |
| BseGI | GGATG | 2 cut(s) | 142, 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BseMII | CTCAG | 2 cut(s) | 234, 317 |
| BseNI | ACTGG | 3 cut(s) | 18, 297, 318 |
| BseRI | GAGGAG | 1 cut(s) | 281 |
| BseX3I | CGGCCG | 1 cut(s) | 12 |
| BseXI | GCAGC | 3 cut(s) | 240, 250, 343 |
| Bsh1236I | CGCG | 2 cut(s) | 11, 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 3 cut(s) | 14, 185, 192 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiWI | CGTACG | 1 cut(s) | 60 |
| BslFI | GGGAC | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BsmFI | GGGAC | 1 cut(s) | 154 |
| BsnI | GGCC | 3 cut(s) | 14, 185, 192 |
| Bsp119I | TTCGAA | 1 cut(s) | 233 |
| BspANI | GGCC | 3 cut(s) | 14, 185, 192 |
| BspCNI | CTCAG | 2 cut(s) | 235, 316 |
| BspFNI | CGCG | 2 cut(s) | 11, 59 |
| BspLI | GGNNCC | 1 cut(s) | 142 |
| BspMAI | CTGCAG | 1 cut(s) | 258 |
| BspT104I | TTCGAA | 1 cut(s) | 233 |
| BsrBI | CCGCTC | 2 cut(s) | 88, 328 |
| BsrI | ACTGG | 3 cut(s) | 18, 297, 318 |
| BssECI | CCNNGG | 2 cut(s) | 9, 339 |
| BssT1I | CCWWGG | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 1 cut(s) | 44 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstBI | TTCGAA | 1 cut(s) | 233 |
| BstDEI | CTNAG | 2 cut(s) | 243, 303 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstEII | GGTNACC | 1 cut(s) | 4 |
| BstF5I | GGATG | 2 cut(s) | 142, 148 |
| BstFNI | CGCG | 2 cut(s) | 11, 59 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 314 |
| BstNI | CCWGG | 1 cut(s) | 44 |
| BstPI | GGTNACC | 1 cut(s) | 4 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| BstSFI | CTRYAG | 2 cut(s) | 161, 254 |
| BstUI | CGCG | 2 cut(s) | 11, 59 |
| BstV1I | GCAGC | 3 cut(s) | 240, 250, 343 |
| BstZI | CGGCCG | 1 cut(s) | 12 |
| Bsu36I | CCTNAGG | 1 cut(s) | 243 |
| BsuRI | GGCC | 3 cut(s) | 14, 185, 192 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtsCI | GGATG | 2 cut(s) | 142, 148 |
| BtsIMutI | CAGTG | 1 cut(s) | 25 |
| CciNI | GCGGCCGC | 1 cut(s) | 12 |
| Cfr13I | GGNCC | 1 cut(s) | 141 |
| Cfr42I | CCGCGG | 1 cut(s) | 12 |
| Csp6I | GTAC | 2 cut(s) | 61, 158 |
| CviQI | GTAC | 2 cut(s) | 61, 158 |
| DdeI | CTNAG | 2 cut(s) | 243, 303 |
| EaeI | YGGCCR | 2 cut(s) | 12, 190 |
| EagI | CGGCCG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| EciI | GGCGGA | 2 cut(s) | 311, 332 |
| EclXI | CGGCCG | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 1 cut(s) | 339 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco52I | CGGCCG | 1 cut(s) | 12 |
| Eco81I | CCTNAGG | 1 cut(s) | 243 |
| Eco91I | GGTNACC | 1 cut(s) | 4 |
| EcoO65I | GGTNACC | 1 cut(s) | 4 |
| EcoRI | GAATTC | 1 cut(s) | 68 |
| EcoRII | CCWGG | 1 cut(s) | 42 |
| EcoT14I | CCWWGG | 1 cut(s) | 339 |
| ErhI | CCWWGG | 1 cut(s) | 339 |
| FaqI | GGGAC | 1 cut(s) | 154 |
| FauI | CCCGC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 15, 57, 239, 254, 329, 332 |
| FokI | GGATG | 2 cut(s) | 135, 149 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 15, 57, 239, 254, 329, 332 |
| FspBI | CTAG | 2 cut(s) | 119, 309 |
| GluI | GCNGC | 7 cut(s) | 12, 15, 57, 239, 254, 329, 332 |
| HaeIII | GGCC | 3 cut(s) | 14, 185, 192 |
| HinfI | GANTC | 3 cut(s) | 47, 123, 299 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 206 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 2 cut(s) | 31, 256 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 314 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 303 |
| KspI | CCGCGG | 1 cut(s) | 12 |
| LmnI | GCTCC | 2 cut(s) | 268, 325 |
| Lsp1109I | GCAGC | 3 cut(s) | 240, 250, 343 |
| MaeI | CTAG | 2 cut(s) | 119, 309 |
| MaeIII | GTNAC | 2 cut(s) | 4, 207 |
| MbiI | CCGCTC | 2 cut(s) | 88, 328 |
| MboII | GAAGA | 1 cut(s) | 211 |
| MfeI | CAATTG | 1 cut(s) | 153 |
| MlsI | TGGCCA | 1 cut(s) | 192 |
| MluCI | AATT | 2 cut(s) | 68, 153 |
| MluNI | TGGCCA | 1 cut(s) | 192 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MnlI | CCTC | 5 cut(s) | 19, 108, 116, 238, 259 |
| Mox20I | TGGCCA | 1 cut(s) | 192 |
| MscI | TGGCCA | 1 cut(s) | 192 |
| Msp20I | TGGCCA | 1 cut(s) | 192 |
| MspA1I | CMGCKG | 2 cut(s) | 11, 334 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| MunI | CAATTG | 1 cut(s) | 153 |
| MvaI | CCWGG | 1 cut(s) | 44 |
| MvnI | CGCG | 2 cut(s) | 11, 59 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 142 |
| NmeAIII | GCCGAG | 1 cut(s) | 161 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| NotI | GCGGCCGC | 1 cut(s) | 12 |
| NspV | TTCGAA | 1 cut(s) | 233 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PfeI | GAWTC | 2 cut(s) | 123, 299 |
| Pfl23II | CGTACG | 1 cut(s) | 60 |
| PkrI | GCNGC | 7 cut(s) | 13, 16, 58, 240, 255, 330, 333 |
| PleI | GAGTC | 1 cut(s) | 41 |
| PpsI | GAGTC | 1 cut(s) | 41 |
| Psp6I | CCWGG | 1 cut(s) | 42 |
| PspEI | GGTNACC | 1 cut(s) | 4 |
| PspGI | CCWGG | 1 cut(s) | 42 |
| PspLI | CGTACG | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 1 cut(s) | 142 |
| PspPI | GGNCC | 1 cut(s) | 141 |
| PstI | CTGCAG | 1 cut(s) | 258 |
| PvuII | CAGCTG | 1 cut(s) | 334 |
| RsaI | GTAC | 2 cut(s) | 62, 159 |
| RsaNI | GTAC | 2 cut(s) | 61, 158 |
| SacII | CCGCGG | 1 cut(s) | 12 |
| SatI | GCNGC | 7 cut(s) | 12, 15, 57, 239, 254, 329, 332 |
| Sau96I | GGNCC | 1 cut(s) | 141 |
| SchI | GAGTC | 1 cut(s) | 41 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SetI | ASST | 8 cut(s) | 30, 45, 108, 182, 249, 255, 273, 336 |
| SfcI | CTRYAG | 2 cut(s) | 161, 254 |
| Sfr303I | CCGCGG | 1 cut(s) | 12 |
| SfuI | TTCGAA | 1 cut(s) | 233 |
| SgrBI | CCGCGG | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 141 |
| Sse9I | AATT | 2 cut(s) | 68, 153 |
| SspMI | CTAG | 2 cut(s) | 119, 309 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| StyI | CCWWGG | 1 cut(s) | 339 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaqI | TCGA | 3 cut(s) | 126, 233, 249 |
| TasI | AATT | 2 cut(s) | 68, 153 |
| TatI | WGTACW | 1 cut(s) | 157 |
| TauI | GCSGC | 4 cut(s) | 14, 17, 59, 331 |
| TfiI | GAWTC | 2 cut(s) | 123, 299 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| TseI | GCWGC | 3 cut(s) | 238, 253, 331 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspGWI | ACGGA | 2 cut(s) | 144, 190 |
| TspRI | CASTG | 1 cut(s) | 25 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| XapI | RAATTY | 1 cut(s) | 68 |
| XspI | CTAG | 2 cut(s) | 119, 309 |