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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 283 |
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 3 cut(s) | 191, 227, 431 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AccBSI | CCGCTC | 4 cut(s) | 70, 315, 333, 423 |
| AccII | CGCG | 1 cut(s) | 59 |
| AcyI | GRCGYC | 2 cut(s) | 192, 443 |
| AfaI | GTAC | 2 cut(s) | 158, 604 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 237, 281, 304, 462, 509 |
| AflII | CTTAAG | 1 cut(s) | 544 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AleI | CACNNNNGTG | 1 cut(s) | 437 |
| AluBI | AGCT | 2 cut(s) | 200, 302 |
| AluI | AGCT | 2 cut(s) | 200, 302 |
| Alw26I | GTCTC | 1 cut(s) | 394 |
| AoxI | GGCC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 2 cut(s) | 111, 179 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 601, 633 |
| AspLEI | GCGC | 1 cut(s) | 194 |
| AsuC2I | CCSGG | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 451, 524 |
| BaeGI | GKGCMC | 1 cut(s) | 230 |
| BanI | GGYRCC | 3 cut(s) | 191, 227, 431 |
| BanII | GRGCYC | 1 cut(s) | 561 |
| BbvCI | CCTCAGC | 1 cut(s) | 303 |
| BbvI | GCAGC | 2 cut(s) | 123, 191 |
| BccI | CCATC | 3 cut(s) | 166, 422, 503 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BcnI | CCSGG | 1 cut(s) | 91 |
| BcoDI | GTCTC | 1 cut(s) | 394 |
| BfaI | CTAG | 1 cut(s) | 640 |
| BfoI | RGCGCY | 1 cut(s) | 195 |
| BfrI | CTTAAG | 1 cut(s) | 544 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 592 |
| BglII | AGATCT | 1 cut(s) | 27 |
| BisI | GCNGC | 5 cut(s) | 112, 123, 180, 411, 587 |
| BlsI | GCNGC | 5 cut(s) | 113, 124, 181, 412, 588 |
| Bme1390I | CCNGG | 2 cut(s) | 91, 485 |
| BmiI | GGNNCC | 4 cut(s) | 193, 229, 291, 433 |
| BmrFI | CCNGG | 2 cut(s) | 91, 485 |
| BmrI | ACTGGG | 1 cut(s) | 247 |
| BmsI | GCATC | 1 cut(s) | 257 |
| BmuI | ACTGGG | 1 cut(s) | 247 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| Bpu10I | CCTNAGC | 3 cut(s) | 303, 316, 590 |
| BpuMI | CCSGG | 1 cut(s) | 91 |
| BsaHI | GRCGYC | 2 cut(s) | 192, 443 |
| BsaJI | CCNNGG | 1 cut(s) | 435 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 355, 385 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 237, 281, 304, 462, 509 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 1 cut(s) | 435 |
| BseGI | GGATG | 2 cut(s) | 433, 514 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 237, 281, 304, 462, 509 |
| BseMII | CTCAG | 2 cut(s) | 294, 330 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BseRI | GAGGAG | 3 cut(s) | 116, 519, 641 |
| BseSI | GKGCMC | 1 cut(s) | 230 |
| BseXI | GCAGC | 2 cut(s) | 123, 191 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 493 |
| BshFI | GGCC | 1 cut(s) | 122 |
| BshNI | GGYRCC | 3 cut(s) | 191, 227, 431 |
| BsiEI | CGRYCG | 1 cut(s) | 493 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BslFI | GGGAC | 1 cut(s) | 616 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 237, 281, 304, 462, 509 |
| BsmAI | GTCTC | 1 cut(s) | 394 |
| BsmFI | GGGAC | 1 cut(s) | 616 |
| BsnI | GGCC | 1 cut(s) | 122 |
| Bsp1286I | GDGCHC | 2 cut(s) | 230, 561 |
| Bsp143I | GATC | 3 cut(s) | 27, 490, 548 |
| Bsp19I | CCATGG | 1 cut(s) | 435 |
| BspANI | GGCC | 1 cut(s) | 122 |
| BspCNI | CTCAG | 2 cut(s) | 295, 329 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 4 cut(s) | 193, 229, 291, 433 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspT107I | GGYRCC | 3 cut(s) | 191, 227, 431 |
| BspTI | CTTAAG | 1 cut(s) | 544 |
| BsrBI | CCGCTC | 4 cut(s) | 70, 315, 333, 423 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssECI | CCNNGG | 1 cut(s) | 435 |
| BssMI | GATC | 3 cut(s) | 27, 490, 548 |
| BssNI | GRCGYC | 2 cut(s) | 192, 443 |
| BssT1I | CCWWGG | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 4 cut(s) | 130, 341, 356, 457 |
| BstACI | GRCGYC | 2 cut(s) | 192, 443 |
| BstAFI | CTTAAG | 1 cut(s) | 544 |
| BstC8I | GCNNGC | 2 cut(s) | 96, 165 |
| BstDEI | CTNAG | 3 cut(s) | 303, 316, 590 |
| BstDSI | CCRYGG | 1 cut(s) | 435 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstF5I | GGATG | 2 cut(s) | 433, 514 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstH2I | RGCGCY | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 194 |
| BstKTI | GATC | 3 cut(s) | 30, 493, 551 |
| BstMAI | GTCTC | 1 cut(s) | 394 |
| BstMBI | GATC | 3 cut(s) | 27, 490, 548 |
| BstMCI | CGRYCG | 1 cut(s) | 493 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 367, 429, 592 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSCI | CCNGG | 2 cut(s) | 89, 483 |
| BstSLI | GKGCMC | 1 cut(s) | 230 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 2 cut(s) | 123, 191 |
| BstX2I | RGATCY | 1 cut(s) | 27 |
| BstYI | RGATCY | 1 cut(s) | 27 |
| BsuRI | GGCC | 1 cut(s) | 122 |
| BtgI | CCRYGG | 1 cut(s) | 435 |
| BtsCI | GGATG | 2 cut(s) | 433, 514 |
| BtsIMutI | CAGTG | 1 cut(s) | 135 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 2 cut(s) | 96, 165 |
| CfoI | GCGC | 1 cut(s) | 194 |
| CseI | GACGC | 1 cut(s) | 451 |
| Csp6I | GTAC | 2 cut(s) | 157, 603 |
| CviAII | CATG | 3 cut(s) | 205, 436, 461 |
| CviJI | RGCY | 7 cut(s) | 122, 200, 302, 413, 450, 559, 595 |
| CviKI_1 | RGCY | 7 cut(s) | 122, 200, 302, 413, 450, 559, 595 |
| CviQI | GTAC | 2 cut(s) | 157, 603 |
| DdeI | CTNAG | 3 cut(s) | 303, 316, 590 |
| DinI | GGCGCC | 1 cut(s) | 193 |
| DpnI | GATC | 3 cut(s) | 29, 492, 550 |
| DpnII | GATC | 3 cut(s) | 27, 490, 548 |
| Eco130I | CCWWGG | 1 cut(s) | 435 |
| Eco24I | GRGCYC | 1 cut(s) | 561 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoT14I | CCWWGG | 1 cut(s) | 435 |
| EcoT38I | GRGCYC | 1 cut(s) | 561 |
| EgeI | GGCGCC | 1 cut(s) | 193 |
| EheI | GGCGCC | 1 cut(s) | 193 |
| ErhI | CCWWGG | 1 cut(s) | 435 |
| FaeI | CATG | 3 cut(s) | 208, 439, 464 |
| FaiI | YATR | 5 cut(s) | 197, 206, 407, 437, 462 |
| FaqI | GGGAC | 1 cut(s) | 616 |
| FatI | CATG | 3 cut(s) | 204, 435, 460 |
| FauI | CCCGC | 2 cut(s) | 30, 428 |
| Fnu4HI | GCNGC | 5 cut(s) | 112, 123, 180, 411, 587 |
| FokI | GGATG | 2 cut(s) | 440, 521 |
| FriOI | GRGCYC | 1 cut(s) | 561 |
| Fsp4HI | GCNGC | 5 cut(s) | 112, 123, 180, 411, 587 |
| FspBI | CTAG | 1 cut(s) | 640 |
| GlaI | GCGC | 1 cut(s) | 193 |
| GluI | GCNGC | 5 cut(s) | 112, 123, 180, 411, 587 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeII | RGCGCY | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 122 |
| HapII | CCGG | 1 cut(s) | 91 |
| HgaI | GACGC | 1 cut(s) | 451 |
| HhaI | GCGC | 1 cut(s) | 194 |
| Hin1I | GRCGYC | 2 cut(s) | 192, 443 |
| Hin1II | CATG | 3 cut(s) | 208, 439, 464 |
| Hin6I | GCGC | 1 cut(s) | 192 |
| HinP1I | GCGC | 1 cut(s) | 192 |
| HinfI | GANTC | 3 cut(s) | 41, 364, 629 |
| HpaII | CCGG | 1 cut(s) | 91 |
| HphI | GGTGA | 3 cut(s) | 347, 451, 524 |
| Hpy188I | TCNGA | 3 cut(s) | 385, 427, 469 |
| HpyAV | CCTTC | 2 cut(s) | 178, 217 |
| HpyCH4III | ACNGT | 4 cut(s) | 130, 341, 356, 457 |
| HpyCH4V | TGCA | 1 cut(s) | 398 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 367, 429, 592 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 316, 590 |
| Hsp92I | GRCGYC | 2 cut(s) | 192, 443 |
| Hsp92II | CATG | 3 cut(s) | 208, 439, 464 |
| HspAI | GCGC | 1 cut(s) | 192 |
| KasI | GGCGCC | 1 cut(s) | 191 |
| Kzo9I | GATC | 3 cut(s) | 27, 490, 548 |
| Lsp1109I | GCAGC | 2 cut(s) | 123, 191 |
| LweI | GCATC | 1 cut(s) | 257 |
| MaeI | CTAG | 1 cut(s) | 640 |
| MaeIII | GTNAC | 3 cut(s) | 335, 439, 523 |
| MalI | GATC | 3 cut(s) | 29, 492, 550 |
| MbiI | CCGCTC | 4 cut(s) | 70, 315, 333, 423 |
| MboI | GATC | 3 cut(s) | 27, 490, 548 |
| MboII | GAAGA | 1 cut(s) | 527 |
| MflI | RGATCY | 1 cut(s) | 27 |
| MhlI | GDGCHC | 2 cut(s) | 230, 561 |
| MluCI | AATT | 1 cut(s) | 21 |
| Mly113I | GGCGCC | 1 cut(s) | 192 |
| MlyI | GAGTC | 2 cut(s) | 358, 638 |
| MmeI | TCCRAC | 2 cut(s) | 54, 398 |
| MseI | TTAA | 3 cut(s) | 15, 141, 545 |
| MslI | CAYNNNNRTG | 1 cut(s) | 437 |
| MspA1I | CMGCKG | 2 cut(s) | 37, 361 |
| MspCI | CTTAAG | 1 cut(s) | 544 |
| MspI | CCGG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 2 cut(s) | 91, 485 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MvnI | CGCG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 367, 429, 592 |
| NarI | GGCGCC | 1 cut(s) | 192 |
| NciI | CCSGG | 1 cut(s) | 91 |
| NcoI | CCATGG | 1 cut(s) | 435 |
| NdeII | GATC | 3 cut(s) | 27, 490, 548 |
| NlaIII | CATG | 3 cut(s) | 208, 439, 464 |
| NlaIV | GGNNCC | 4 cut(s) | 193, 229, 291, 433 |
| NmuCI | GTSAC | 2 cut(s) | 335, 439 |
| OliI | CACNNNNGTG | 1 cut(s) | 437 |
| PaqCI | CACCTGC | 1 cut(s) | 283 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PflFI | GACNNNGTC | 1 cut(s) | 239 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PkrI | GCNGC | 5 cut(s) | 113, 124, 181, 412, 588 |
| Ple19I | CGATCG | 1 cut(s) | 493 |
| PleI | GAGTC | 2 cut(s) | 358, 637 |
| PluTI | GGCGCC | 1 cut(s) | 195 |
| PpsI | GAGTC | 2 cut(s) | 358, 637 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 4 cut(s) | 193, 229, 291, 433 |
| PsuI | RGATCY | 1 cut(s) | 27 |
| PsyI | GACNNNGTC | 1 cut(s) | 239 |
| PvuI | CGATCG | 1 cut(s) | 493 |
| RsaI | GTAC | 2 cut(s) | 158, 604 |
| RsaNI | GTAC | 2 cut(s) | 157, 603 |
| RseI | CAYNNNNRTG | 1 cut(s) | 437 |
| SaqAI | TTAA | 3 cut(s) | 15, 141, 545 |
| SatI | GCNGC | 5 cut(s) | 112, 123, 180, 411, 587 |
| Sau3AI | GATC | 3 cut(s) | 27, 490, 548 |
| SchI | GAGTC | 2 cut(s) | 358, 638 |
| ScrFI | CCNGG | 2 cut(s) | 91, 485 |
| SduI | GDGCHC | 2 cut(s) | 230, 561 |
| SfaNI | GCATC | 1 cut(s) | 257 |
| SfoI | GGCGCC | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 437 |
| SmlI | CTYRAG | 1 cut(s) | 544 |
| SmoI | CTYRAG | 1 cut(s) | 544 |
| Sse9I | AATT | 1 cut(s) | 21 |
| SspDI | GGCGCC | 1 cut(s) | 191 |
| SspI | AATATT | 1 cut(s) | 615 |
| SspMI | CTAG | 1 cut(s) | 640 |
| StyD4I | CCNGG | 2 cut(s) | 89, 483 |
| StyI | CCWWGG | 1 cut(s) | 435 |
| TaaI | ACNGT | 4 cut(s) | 130, 341, 356, 457 |
| TaqI | TCGA | 2 cut(s) | 489, 493 |
| TasI | AATT | 1 cut(s) | 21 |
| TatI | WGTACW | 2 cut(s) | 156, 602 |
| TauI | GCSGC | 3 cut(s) | 125, 413, 589 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 3 cut(s) | 15, 141, 545 |
| Tru9I | TTAA | 3 cut(s) | 15, 141, 545 |
| TscAI | CASTG | 1 cut(s) | 135 |
| TseFI | GTSAC | 2 cut(s) | 335, 439 |
| TseI | GCWGC | 2 cut(s) | 111, 179 |
| Tsp45I | GTSAC | 2 cut(s) | 335, 439 |
| TspDTI | ATGAA | 1 cut(s) | 449 |
| TspGWI | ACGGA | 2 cut(s) | 131, 243 |
| TspRI | CASTG | 1 cut(s) | 135 |
| Tth111I | GACNNNGTC | 1 cut(s) | 239 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| Vha464I | CTTAAG | 1 cut(s) | 544 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 202 |
| XspI | CTAG | 1 cut(s) | 640 |