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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 698, 860 |
| AccBSI | CCGCTC | 3 cut(s) | 376, 454, 762 |
| AclWI | GGATC | 2 cut(s) | 510, 529 |
| AcoI | YGGCCR | 1 cut(s) | 915 |
| AcuI | CTGAAG | 1 cut(s) | 518 |
| AfaI | GTAC | 1 cut(s) | 772 |
| AfeI | AGCGCT | 1 cut(s) | 95 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 166, 343, 347, 544, 775, 891 |
| AgsI | TTSAA | 3 cut(s) | 86, 427, 542 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 56 |
| AjnI | CCWGG | 3 cut(s) | 321, 711, 744 |
| AleI | CACNNNNGTG | 1 cut(s) | 866 |
| AluBI | AGCT | 6 cut(s) | 279, 316, 361, 475, 842, 956 |
| AluI | AGCT | 6 cut(s) | 279, 316, 361, 475, 842, 956 |
| Alw26I | GTCTC | 3 cut(s) | 134, 438, 823 |
| AlwI | GGATC | 2 cut(s) | 510, 529 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 271 |
| Ama87I | CYCGRG | 3 cut(s) | 218, 342, 449 |
| Aor51HI | AGCGCT | 1 cut(s) | 95 |
| AoxI | GGCC | 4 cut(s) | 150, 168, 377, 915 |
| ApeKI | GCWGC | 8 cut(s) | 68, 128, 326, 512, 618, 839, 941, 953 |
| AspLEI | GCGC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 3 cut(s) | 150, 240, 378 |
| AsuC2I | CCSGG | 1 cut(s) | 598 |
| AsuHPI | GGTGA | 5 cut(s) | 149, 202, 583, 776, 880 |
| AvaI | CYCGRG | 3 cut(s) | 218, 342, 449 |
| AvaII | GGWCC | 1 cut(s) | 240 |
| BalI | TGGCCA | 1 cut(s) | 917 |
| BanI | GGYRCC | 2 cut(s) | 698, 860 |
| BanII | GRGCYC | 2 cut(s) | 881, 963 |
| BauI | CACGAG | 1 cut(s) | 311 |
| BbvI | GCAGC | 8 cut(s) | 55, 140, 313, 524, 630, 851, 928, 965 |
| BccI | CCATC | 3 cut(s) | 230, 673, 851 |
| BceAI | ACGGC | 3 cut(s) | 164, 270, 620 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 610, 644 |
| BciT130I | CCWGG | 3 cut(s) | 323, 713, 746 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BclI | TGATCA | 1 cut(s) | 898 |
| BcnI | CCSGG | 1 cut(s) | 598 |
| BcoDI | GTCTC | 3 cut(s) | 134, 438, 823 |
| BfaI | CTAG | 1 cut(s) | 207 |
| BfmI | CTRYAG | 3 cut(s) | 405, 564, 942 |
| BfoI | RGCGCY | 1 cut(s) | 97 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 116, 641 |
| BlpI | GCTNAGC | 1 cut(s) | 957 |
| Bme1390I | CCNGG | 4 cut(s) | 323, 598, 713, 746 |
| Bme18I | GGWCC | 1 cut(s) | 240 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 56 |
| BmeT110I | CYCGRG | 3 cut(s) | 218, 342, 449 |
| BmgT120I | GGNCC | 3 cut(s) | 150, 240, 378 |
| BmiI | GGNNCC | 3 cut(s) | 241, 700, 862 |
| BmrFI | CCNGG | 4 cut(s) | 323, 598, 713, 746 |
| BmsI | GCATC | 6 cut(s) | 97, 124, 391, 400, 861, 928 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 325, 357 |
| BpmI | CTGGAG | 3 cut(s) | 497, 602, 734 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 957 |
| BpuMI | CCSGG | 1 cut(s) | 598 |
| BsaI | GGTCTC | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 5 cut(s) | 341, 387, 636, 745, 864 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 784, 814 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 166, 343, 347, 544, 775, 891 |
| Bse118I | RCCGGY | 1 cut(s) | 931 |
| Bse1I | ACTGG | 2 cut(s) | 513, 549 |
| Bse3DI | GCAATG | 2 cut(s) | 681, 757 |
| BseBI | CCWGG | 3 cut(s) | 323, 713, 746 |
| BseDI | CCNNGG | 5 cut(s) | 341, 387, 636, 745, 864 |
| BseGI | GGATG | 5 cut(s) | 241, 373, 784, 862, 943 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 166, 343, 347, 544, 775, 891 |
| BseMI | GCAATG | 2 cut(s) | 681, 757 |
| BseMII | CTCAG | 1 cut(s) | 948 |
| BseNI | ACTGG | 2 cut(s) | 513, 549 |
| BseXI | GCAGC | 8 cut(s) | 55, 140, 313, 524, 630, 851, 928, 965 |
| BseYI | CCCAGC | 1 cut(s) | 471 |
| BsgI | GTGCAG | 1 cut(s) | 54 |
| BshFI | GGCC | 4 cut(s) | 152, 170, 379, 917 |
| BshNI | GGYRCC | 2 cut(s) | 698, 860 |
| BsiHKCI | CYCGRG | 3 cut(s) | 218, 342, 449 |
| BsiSI | CCGG | 2 cut(s) | 598, 932 |
| BsiWI | CGTACG | 1 cut(s) | 770 |
| BslFI | GGGAC | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 166, 343, 347, 544, 775, 891 |
| BsmAI | GTCTC | 3 cut(s) | 134, 438, 823 |
| BsmFI | GGGAC | 1 cut(s) | 253 |
| BsmI | GAATGC | 1 cut(s) | 401 |
| BsnI | GGCC | 4 cut(s) | 152, 170, 379, 917 |
| Bso31I | GGTCTC | 1 cut(s) | 438 |
| BsoBI | CYCGRG | 3 cut(s) | 218, 342, 449 |
| Bsp1286I | GDGCHC | 2 cut(s) | 881, 963 |
| Bsp143I | GATC | 3 cut(s) | 502, 534, 898 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 957 |
| Bsp19I | CCATGG | 1 cut(s) | 864 |
| BspANI | GGCC | 4 cut(s) | 152, 170, 379, 917 |
| BspCNI | CTCAG | 1 cut(s) | 949 |
| BspLI | GGNNCC | 3 cut(s) | 241, 700, 862 |
| BspMAI | CTGCAG | 2 cut(s) | 568, 946 |
| BspPI | GGATC | 2 cut(s) | 510, 529 |
| BspT107I | GGYRCC | 2 cut(s) | 698, 860 |
| BspTNI | GGTCTC | 1 cut(s) | 438 |
| BsrBI | CCGCTC | 3 cut(s) | 376, 454, 762 |
| BsrDI | GCAATG | 2 cut(s) | 681, 757 |
| BsrFI | RCCGGY | 1 cut(s) | 931 |
| BsrI | ACTGG | 2 cut(s) | 513, 549 |
| BssAI | RCCGGY | 1 cut(s) | 931 |
| BssECI | CCNNGG | 5 cut(s) | 341, 387, 636, 745, 864 |
| BssMI | GATC | 3 cut(s) | 502, 534, 898 |
| BssSI | CACGAG | 1 cut(s) | 311 |
| BssT1I | CCWWGG | 2 cut(s) | 387, 864 |
| Bst2BI | CACGAG | 1 cut(s) | 311 |
| Bst2UI | CCWGG | 3 cut(s) | 323, 713, 746 |
| Bst4CI | ACNGT | 4 cut(s) | 196, 244, 770, 775 |
| Bst6I | CTCTTC | 1 cut(s) | 569 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 134, 950 |
| BstC8I | GCNNGC | 3 cut(s) | 98, 363, 415 |
| BstDEI | CTNAG | 2 cut(s) | 522, 957 |
| BstDSI | CCRYGG | 2 cut(s) | 636, 864 |
| BstEII | GGTNACC | 1 cut(s) | 764 |
| BstF5I | GGATG | 5 cut(s) | 241, 373, 784, 862, 943 |
| BstH2I | RGCGCY | 1 cut(s) | 97 |
| BstHHI | GCGC | 1 cut(s) | 96 |
| BstKTI | GATC | 3 cut(s) | 505, 537, 901 |
| BstMAI | GTCTC | 3 cut(s) | 134, 438, 823 |
| BstMBI | GATC | 3 cut(s) | 502, 534, 898 |
| BstNI | CCWGG | 3 cut(s) | 323, 713, 746 |
| BstNSI | RCATGY | 1 cut(s) | 41 |
| BstPI | GGTNACC | 1 cut(s) | 764 |
| BstSCI | CCNGG | 4 cut(s) | 321, 596, 711, 744 |
| BstSFI | CTRYAG | 3 cut(s) | 405, 564, 942 |
| BstV1I | GCAGC | 8 cut(s) | 55, 140, 313, 524, 630, 851, 928, 965 |
| BstX2I | RGATCY | 1 cut(s) | 534 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 857 |
| BstYI | RGATCY | 1 cut(s) | 534 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BsuRI | GGCC | 4 cut(s) | 152, 170, 379, 917 |
| BtgI | CCRYGG | 2 cut(s) | 636, 864 |
| BtgZI | GCGATG | 2 cut(s) | 414, 701 |
| BtsCI | GGATG | 5 cut(s) | 241, 373, 784, 862, 943 |
| Cac8I | GCNNGC | 3 cut(s) | 98, 363, 415 |
| CaiI | CAGNNNCTG | 1 cut(s) | 271 |
| CfoI | GCGC | 1 cut(s) | 96 |
| Cfr10I | RCCGGY | 1 cut(s) | 931 |
| Cfr13I | GGNCC | 3 cut(s) | 150, 240, 378 |
| CseI | GACGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 1 cut(s) | 771 |
| CviAII | CATG | 4 cut(s) | 38, 464, 622, 865 |
| CviQI | GTAC | 1 cut(s) | 771 |
| DdeI | CTNAG | 2 cut(s) | 522, 957 |
| DpnI | GATC | 3 cut(s) | 504, 536, 900 |
| DpnII | GATC | 3 cut(s) | 502, 534, 898 |
| DriI | GACNNNNNGTC | 1 cut(s) | 56 |
| EaeI | YGGCCR | 1 cut(s) | 915 |
| Eam1104I | CTCTTC | 1 cut(s) | 569 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 56 |
| EarI | CTCTTC | 1 cut(s) | 569 |
| EciI | GGCGGA | 3 cut(s) | 380, 544, 786 |
| Eco130I | CCWWGG | 2 cut(s) | 387, 864 |
| Eco24I | GRGCYC | 2 cut(s) | 881, 963 |
| Eco31I | GGTCTC | 1 cut(s) | 438 |
| Eco47I | GGWCC | 1 cut(s) | 240 |
| Eco47III | AGCGCT | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 1 cut(s) | 518 |
| Eco88I | CYCGRG | 3 cut(s) | 218, 342, 449 |
| Eco91I | GGTNACC | 1 cut(s) | 764 |
| EcoO109I | RGGNCCY | 1 cut(s) | 150 |
| EcoO65I | GGTNACC | 1 cut(s) | 764 |
| EcoRII | CCWGG | 3 cut(s) | 321, 711, 744 |
| EcoT14I | CCWWGG | 2 cut(s) | 387, 864 |
| EcoT38I | GRGCYC | 2 cut(s) | 881, 963 |
| ErhI | CCWWGG | 2 cut(s) | 387, 864 |
| FaeI | CATG | 4 cut(s) | 41, 467, 625, 868 |
| FaiI | YATR | 8 cut(s) | 39, 146, 465, 488, 623, 666, 836, 866 |
| FaqI | GGGAC | 1 cut(s) | 253 |
| FatI | CATG | 4 cut(s) | 37, 463, 621, 864 |
| FauI | CCCGC | 1 cut(s) | 16 |
| FbaI | TGATCA | 1 cut(s) | 898 |
| FokI | GGATG | 5 cut(s) | 248, 380, 791, 869, 950 |
| FriOI | GRGCYC | 2 cut(s) | 881, 963 |
| FspBI | CTAG | 1 cut(s) | 207 |
| GlaI | GCGC | 1 cut(s) | 95 |
| GsaI | CCCAGC | 1 cut(s) | 475 |
| GsuI | CTGGAG | 3 cut(s) | 497, 602, 734 |
| HaeII | RGCGCY | 1 cut(s) | 97 |
| HaeIII | GGCC | 4 cut(s) | 152, 170, 379, 917 |
| HapII | CCGG | 2 cut(s) | 598, 932 |
| HgaI | GACGC | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 96 |
| Hin1II | CATG | 4 cut(s) | 41, 467, 625, 868 |
| Hin6I | GCGC | 1 cut(s) | 94 |
| HinP1I | GCGC | 1 cut(s) | 94 |
| HinfI | GANTC | 3 cut(s) | 8, 548, 793 |
| HpaII | CCGG | 2 cut(s) | 598, 932 |
| HphI | GGTGA | 5 cut(s) | 149, 202, 583, 776, 880 |
| Hpy188I | TCNGA | 1 cut(s) | 856 |
| Hpy188III | TCNNGA | 2 cut(s) | 48, 344 |
| Hpy99I | CGWCG | 4 cut(s) | 62, 230, 256, 334 |
| HpyAV | CCTTC | 4 cut(s) | 160, 493, 548, 685 |
| HpyCH4III | ACNGT | 4 cut(s) | 196, 244, 770, 775 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 71, 566, 944, 953 |
| HpyF3I | CTNAG | 2 cut(s) | 522, 957 |
| Hsp92II | CATG | 4 cut(s) | 41, 467, 625, 868 |
| HspAI | GCGC | 1 cut(s) | 94 |
| Ksp22I | TGATCA | 1 cut(s) | 898 |
| Kzo9I | GATC | 3 cut(s) | 502, 534, 898 |
| LmnI | GCTCC | 3 cut(s) | 31, 478, 759 |
| Lsp1109I | GCAGC | 8 cut(s) | 55, 140, 313, 524, 630, 851, 928, 965 |
| LweI | GCATC | 6 cut(s) | 97, 124, 391, 400, 861, 928 |
| MaeI | CTAG | 1 cut(s) | 207 |
| MaeIII | GTNAC | 3 cut(s) | 155, 190, 764 |
| MalI | GATC | 3 cut(s) | 504, 536, 900 |
| MbiI | CCGCTC | 3 cut(s) | 376, 454, 762 |
| MboI | GATC | 3 cut(s) | 502, 534, 898 |
| MboII | GAAGA | 3 cut(s) | 74, 543, 586 |
| MflI | RGATCY | 1 cut(s) | 534 |
| MhlI | GDGCHC | 2 cut(s) | 881, 963 |
| MlsI | TGGCCA | 1 cut(s) | 917 |
| MluCI | AATT | 2 cut(s) | 230, 809 |
| MluNI | TGGCCA | 1 cut(s) | 917 |
| MlyI | GAGTC | 1 cut(s) | 787 |
| MmeI | TCCRAC | 2 cut(s) | 9, 827 |
| Mox20I | TGGCCA | 1 cut(s) | 917 |
| MscI | TGGCCA | 1 cut(s) | 917 |
| MseI | TTAA | 1 cut(s) | 648 |
| MslI | CAYNNNNRTG | 3 cut(s) | 855, 866, 869 |
| Msp20I | TGGCCA | 1 cut(s) | 917 |
| MspA1I | CMGCKG | 4 cut(s) | 187, 475, 790, 956 |
| MspI | CCGG | 2 cut(s) | 598, 932 |
| MspR9I | CCNGG | 4 cut(s) | 323, 598, 713, 746 |
| Mva1269I | GAATGC | 1 cut(s) | 401 |
| MvaI | CCWGG | 3 cut(s) | 323, 713, 746 |
| NciI | CCSGG | 1 cut(s) | 598 |
| NcoI | CCATGG | 1 cut(s) | 864 |
| NdeII | GATC | 3 cut(s) | 502, 534, 898 |
| NlaIII | CATG | 4 cut(s) | 41, 467, 625, 868 |
| NlaIV | GGNNCC | 3 cut(s) | 241, 700, 862 |
| NmeAIII | GCCGAG | 1 cut(s) | 900 |
| NmuCI | GTSAC | 3 cut(s) | 155, 190, 764 |
| NspI | RCATGY | 1 cut(s) | 41 |
| OliI | CACNNNNGTG | 1 cut(s) | 866 |
| PaeR7I | CTCGAG | 1 cut(s) | 449 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 225, 456 |
| PctI | GAATGC | 1 cut(s) | 401 |
| PfeI | GAWTC | 2 cut(s) | 8, 548 |
| Pfl23II | CGTACG | 1 cut(s) | 770 |
| PleI | GAGTC | 1 cut(s) | 787 |
| PpsI | GAGTC | 1 cut(s) | 787 |
| Psp6I | CCWGG | 3 cut(s) | 321, 711, 744 |
| PspEI | GGTNACC | 1 cut(s) | 764 |
| PspFI | CCCAGC | 1 cut(s) | 471 |
| PspGI | CCWGG | 3 cut(s) | 321, 711, 744 |
| PspLI | CGTACG | 1 cut(s) | 770 |
| PspN4I | GGNNCC | 3 cut(s) | 241, 700, 862 |
| PspPI | GGNCC | 3 cut(s) | 150, 240, 378 |
| PspXI | VCTCGAGB | 1 cut(s) | 449 |
| PstI | CTGCAG | 2 cut(s) | 568, 946 |
| PstNI | CAGNNNCTG | 1 cut(s) | 271 |
| PsuI | RGATCY | 1 cut(s) | 534 |
| PvuII | CAGCTG | 2 cut(s) | 475, 956 |
| RsaI | GTAC | 1 cut(s) | 772 |
| RsaNI | GTAC | 1 cut(s) | 771 |
| RseI | CAYNNNNRTG | 3 cut(s) | 855, 866, 869 |
| SaqAI | TTAA | 1 cut(s) | 648 |
| Sau3AI | GATC | 3 cut(s) | 502, 534, 898 |
| Sau96I | GGNCC | 3 cut(s) | 150, 240, 378 |
| SchI | GAGTC | 1 cut(s) | 787 |
| ScrFI | CCNGG | 4 cut(s) | 323, 598, 713, 746 |
| SduI | GDGCHC | 2 cut(s) | 881, 963 |
| SfaNI | GCATC | 6 cut(s) | 97, 124, 391, 400, 861, 928 |
| SfcI | CTRYAG | 3 cut(s) | 405, 564, 942 |
| Sfr274I | CTCGAG | 1 cut(s) | 449 |
| SgrAI | CRCCGGYG | 1 cut(s) | 931 |
| SinI | GGWCC | 1 cut(s) | 240 |
| SlaI | CTCGAG | 1 cut(s) | 449 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 855, 866, 869 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| Sse9I | AATT | 2 cut(s) | 230, 809 |
| SspMI | CTAG | 1 cut(s) | 207 |
| StyD4I | CCNGG | 4 cut(s) | 321, 596, 711, 744 |
| StyI | CCWWGG | 2 cut(s) | 387, 864 |
| TaaI | ACNGT | 4 cut(s) | 196, 244, 770, 775 |
| TaqI | TCGA | 7 cut(s) | 225, 251, 281, 332, 372, 450, 922 |
| TasI | AATT | 2 cut(s) | 230, 809 |
| TauI | GCSGC | 4 cut(s) | 187, 379, 420, 635 |
| TfiI | GAWTC | 2 cut(s) | 8, 548 |
| Tru1I | TTAA | 1 cut(s) | 648 |
| Tru9I | TTAA | 1 cut(s) | 648 |
| TseFI | GTSAC | 3 cut(s) | 155, 190, 764 |
| TseI | GCWGC | 8 cut(s) | 68, 128, 326, 512, 618, 839, 941, 953 |
| Tsp45I | GTSAC | 3 cut(s) | 155, 190, 764 |
| TspDTI | ATGAA | 2 cut(s) | 17, 704 |
| VpaK11BI | GGWCC | 1 cut(s) | 240 |
| XceI | RCATGY | 1 cut(s) | 41 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 709 |
| XhoI | CTCGAG | 1 cut(s) | 449 |
| XspI | CTAG | 1 cut(s) | 207 |