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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 274, 1001, 1037 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1047 |
| AccBSI | CCGCTC | 3 cut(s) | 413, 804, 816 |
| AccII | CGCG | 3 cut(s) | 167, 260, 280 |
| AclWI | GGATC | 3 cut(s) | 111, 260, 872 |
| AcoI | YGGCCR | 1 cut(s) | 872 |
| AcuI | CTGAAG | 1 cut(s) | 886 |
| AcyI | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| AfaI | GTAC | 4 cut(s) | 215, 445, 558, 1108 |
| AflIII | ACRYGT | 1 cut(s) | 848 |
| AgeI | ACCGGT | 1 cut(s) | 1066 |
| AgsI | TTSAA | 4 cut(s) | 128, 895, 952, 1139 |
| AjiI | CACGTC | 2 cut(s) | 427, 607 |
| AjnI | CCWGG | 4 cut(s) | 453, 714, 1005, 1126 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 364, 396 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 489, 521 |
| AluBI | AGCT | 3 cut(s) | 41, 670, 1091 |
| AluI | AGCT | 3 cut(s) | 41, 670, 1091 |
| Alw26I | GTCTC | 1 cut(s) | 80 |
| AlwI | GGATC | 3 cut(s) | 111, 260, 872 |
| Ama87I | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| AoxI | GGCC | 7 cut(s) | 207, 386, 688, 711, 872, 926, 996 |
| ApeKI | GCWGC | 2 cut(s) | 619, 1024 |
| AsiGI | ACCGGT | 1 cut(s) | 1066 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 899 |
| AspLEI | GCGC | 5 cut(s) | 260, 277, 295, 333, 1040 |
| AspS9I | GGNCC | 3 cut(s) | 178, 688, 712 |
| AsuHPI | GGTGA | 4 cut(s) | 274, 340, 506, 506 |
| AvaI | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BaeGI | GKGCMC | 3 cut(s) | 31, 606, 1006 |
| BanI | GGYRCC | 3 cut(s) | 274, 1001, 1037 |
| BauI | CACGAG | 3 cut(s) | 6, 117, 406 |
| BbsI | GAAGAC | 1 cut(s) | 245 |
| BbvI | GCAGC | 2 cut(s) | 606, 1011 |
| BccI | CCATC | 1 cut(s) | 1049 |
| BceAI | ACGGC | 7 cut(s) | 107, 320, 377, 554, 596, 775, 955 |
| BciT130I | CCWGG | 4 cut(s) | 455, 716, 1007, 1128 |
| BcoDI | GTCTC | 1 cut(s) | 80 |
| BfmI | CTRYAG | 1 cut(s) | 692 |
| BfoI | RGCGCY | 3 cut(s) | 278, 296, 1041 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 925 |
| BmcAI | AGTACT | 1 cut(s) | 1108 |
| Bme1390I | CCNGG | 4 cut(s) | 455, 716, 1007, 1128 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmeT110I | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| BmgBI | CACGTC | 2 cut(s) | 427, 607 |
| BmgT120I | GGNCC | 3 cut(s) | 178, 688, 712 |
| BmiI | GGNNCC | 5 cut(s) | 276, 366, 417, 1003, 1039 |
| BmrFI | CCNGG | 4 cut(s) | 455, 716, 1007, 1128 |
| BmrI | ACTGGG | 1 cut(s) | 1057 |
| BmsI | GCATC | 2 cut(s) | 42, 754 |
| BmuI | ACTGGG | 1 cut(s) | 1057 |
| BoxI | GACNNNNGTC | 1 cut(s) | 72 |
| BpiI | GAAGAC | 1 cut(s) | 245 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 400, 432 |
| BpmI | CTGGAG | 2 cut(s) | 566, 964 |
| Bpu10I | CCTNAGC | 1 cut(s) | 671 |
| BsaHI | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| BsaJI | CCNNGG | 9 cut(s) | 22, 174, 278, 714, 778, 878, 929, 1005, 1126 |
| BsaWI | WCCGGW | 2 cut(s) | 221, 1066 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 197, 227, 494, 524 |
| Bse118I | RCCGGY | 3 cut(s) | 295, 998, 1066 |
| Bse1I | ACTGG | 2 cut(s) | 549, 1052 |
| BseBI | CCWGG | 4 cut(s) | 455, 716, 1007, 1128 |
| BseDI | CCNNGG | 9 cut(s) | 22, 174, 278, 714, 778, 878, 929, 1005, 1126 |
| BseNI | ACTGG | 2 cut(s) | 549, 1052 |
| BseRI | GAGGAG | 1 cut(s) | 692 |
| BseSI | GKGCMC | 3 cut(s) | 31, 606, 1006 |
| BseXI | GCAGC | 2 cut(s) | 606, 1011 |
| BseYI | CCCAGC | 3 cut(s) | 87, 136, 334 |
| BsgI | GTGCAG | 1 cut(s) | 335 |
| Bsh1236I | CGCG | 3 cut(s) | 167, 260, 280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 567 |
| BshFI | GGCC | 7 cut(s) | 209, 388, 690, 713, 874, 928, 998 |
| BshNI | GGYRCC | 3 cut(s) | 274, 1001, 1037 |
| BshTI | ACCGGT | 1 cut(s) | 1066 |
| BsiEI | CGRYCG | 1 cut(s) | 567 |
| BsiHKCI | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| BsiSI | CCGG | 4 cut(s) | 222, 296, 999, 1067 |
| BslFI | GGGAC | 2 cut(s) | 713, 837 |
| BsmAI | GTCTC | 1 cut(s) | 80 |
| BsmBI | CGTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 2 cut(s) | 713, 837 |
| BsmI | GAATGC | 1 cut(s) | 439 |
| BsnI | GGCC | 7 cut(s) | 209, 388, 690, 713, 874, 928, 998 |
| BsoBI | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| Bsp1286I | GDGCHC | 3 cut(s) | 31, 606, 1006 |
| Bsp143I | GATC | 4 cut(s) | 103, 189, 252, 864 |
| Bsp19I | CCATGG | 1 cut(s) | 174 |
| Bsp68I | TCGCGA | 1 cut(s) | 167 |
| BspANI | GGCC | 7 cut(s) | 209, 388, 690, 713, 874, 928, 998 |
| BspFNI | CGCG | 3 cut(s) | 167, 260, 280 |
| BspLI | GGNNCC | 5 cut(s) | 276, 366, 417, 1003, 1039 |
| BspPI | GGATC | 3 cut(s) | 111, 260, 872 |
| BspT107I | GGYRCC | 3 cut(s) | 274, 1001, 1037 |
| BsrBI | CCGCTC | 3 cut(s) | 413, 804, 816 |
| BsrFI | RCCGGY | 3 cut(s) | 295, 998, 1066 |
| BsrI | ACTGG | 2 cut(s) | 549, 1052 |
| BssAI | RCCGGY | 3 cut(s) | 295, 998, 1066 |
| BssECI | CCNNGG | 9 cut(s) | 22, 174, 278, 714, 778, 878, 929, 1005, 1126 |
| BssMI | GATC | 4 cut(s) | 103, 189, 252, 864 |
| BssNI | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| BssSI | CACGAG | 3 cut(s) | 6, 117, 406 |
| BssT1I | CCWWGG | 2 cut(s) | 174, 878 |
| Bst2BI | CACGAG | 3 cut(s) | 6, 117, 406 |
| Bst2UI | CCWGG | 4 cut(s) | 455, 716, 1007, 1128 |
| Bst4CI | ACNGT | 4 cut(s) | 182, 244, 494, 761 |
| Bst6I | CTCTTC | 1 cut(s) | 9 |
| BstACI | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| BstC8I | GCNNGC | 6 cut(s) | 31, 151, 390, 688, 1080, 1147 |
| BstDEI | CTNAG | 1 cut(s) | 671 |
| BstDSI | CCRYGG | 2 cut(s) | 174, 278 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 521 |
| BstFNI | CGCG | 3 cut(s) | 167, 260, 280 |
| BstH2I | RGCGCY | 3 cut(s) | 278, 296, 1041 |
| BstHHI | GCGC | 5 cut(s) | 260, 277, 295, 333, 1040 |
| BstKTI | GATC | 4 cut(s) | 106, 192, 255, 867 |
| BstMAI | GTCTC | 1 cut(s) | 80 |
| BstMBI | GATC | 4 cut(s) | 103, 189, 252, 864 |
| BstMCI | CGRYCG | 1 cut(s) | 567 |
| BstNI | CCWGG | 4 cut(s) | 455, 716, 1007, 1128 |
| BstNSI | RCATGY | 1 cut(s) | 852 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 72 |
| BstSCI | CCNGG | 4 cut(s) | 453, 714, 1005, 1126 |
| BstSFI | CTRYAG | 1 cut(s) | 692 |
| BstSLI | GKGCMC | 3 cut(s) | 31, 606, 1006 |
| BstUI | CGCG | 3 cut(s) | 167, 260, 280 |
| BstV1I | GCAGC | 2 cut(s) | 606, 1011 |
| BstV2I | GAAGAC | 1 cut(s) | 245 |
| BsuRI | GGCC | 7 cut(s) | 209, 388, 690, 713, 874, 928, 998 |
| BtgI | CCRYGG | 2 cut(s) | 174, 278 |
| BtrI | CACGTC | 2 cut(s) | 427, 607 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 3 cut(s) | 249, 333, 977 |
| BtuMI | TCGCGA | 1 cut(s) | 167 |
| Cac8I | GCNNGC | 6 cut(s) | 31, 151, 390, 688, 1080, 1147 |
| CfoI | GCGC | 5 cut(s) | 260, 277, 295, 333, 1040 |
| Cfr10I | RCCGGY | 3 cut(s) | 295, 998, 1066 |
| Cfr13I | GGNCC | 3 cut(s) | 178, 688, 712 |
| Cfr42I | CCGCGG | 1 cut(s) | 281 |
| CseI | GACGC | 6 cut(s) | 167, 241, 630, 750, 782, 1047 |
| Csp6I | GTAC | 4 cut(s) | 214, 444, 557, 1107 |
| CspAI | ACCGGT | 1 cut(s) | 1066 |
| CviAII | CATG | 6 cut(s) | 155, 175, 211, 592, 623, 849 |
| CviQI | GTAC | 4 cut(s) | 214, 444, 557, 1107 |
| DdeI | CTNAG | 1 cut(s) | 671 |
| DinI | GGCGCC | 2 cut(s) | 276, 1039 |
| DpnI | GATC | 4 cut(s) | 105, 191, 254, 866 |
| DpnII | GATC | 4 cut(s) | 103, 189, 252, 864 |
| EaeI | YGGCCR | 1 cut(s) | 872 |
| Eam1104I | CTCTTC | 1 cut(s) | 9 |
| EarI | CTCTTC | 1 cut(s) | 9 |
| EciI | GGCGGA | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 2 cut(s) | 174, 878 |
| Eco147I | AGGCCT | 1 cut(s) | 388 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 1 cut(s) | 886 |
| Eco88I | CYCGRG | 3 cut(s) | 23, 777, 1150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 521 |
| EcoRII | CCWGG | 4 cut(s) | 453, 714, 1005, 1126 |
| EcoT14I | CCWWGG | 2 cut(s) | 174, 878 |
| EgeI | GGCGCC | 2 cut(s) | 276, 1039 |
| EheI | GGCGCC | 2 cut(s) | 276, 1039 |
| ErhI | CCWWGG | 2 cut(s) | 174, 878 |
| Esp3I | CGTCTC | 1 cut(s) | 80 |
| FaeI | CATG | 6 cut(s) | 158, 178, 214, 595, 626, 852 |
| FaiI | YATR | 8 cut(s) | 156, 176, 212, 302, 353, 593, 624, 850 |
| FaqI | GGGAC | 2 cut(s) | 713, 837 |
| FatI | CATG | 6 cut(s) | 154, 174, 210, 591, 622, 848 |
| FauI | CCCGC | 5 cut(s) | 349, 679, 797, 854, 899 |
| GlaI | GCGC | 5 cut(s) | 259, 276, 294, 332, 1039 |
| GsaI | CCCAGC | 3 cut(s) | 91, 140, 338 |
| GsuI | CTGGAG | 2 cut(s) | 566, 964 |
| HaeII | RGCGCY | 3 cut(s) | 278, 296, 1041 |
| HaeIII | GGCC | 7 cut(s) | 209, 388, 690, 713, 874, 928, 998 |
| HapII | CCGG | 4 cut(s) | 222, 296, 999, 1067 |
| HgaI | GACGC | 6 cut(s) | 167, 241, 630, 750, 782, 1047 |
| HhaI | GCGC | 5 cut(s) | 260, 277, 295, 333, 1040 |
| Hin1I | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| Hin1II | CATG | 6 cut(s) | 158, 178, 214, 595, 626, 852 |
| Hin6I | GCGC | 5 cut(s) | 258, 275, 293, 331, 1038 |
| HinP1I | GCGC | 5 cut(s) | 258, 275, 293, 331, 1038 |
| HincII | GTYRAC | 1 cut(s) | 574 |
| HindII | GTYRAC | 1 cut(s) | 574 |
| HindIII | AAGCTT | 1 cut(s) | 1089 |
| HinfI | GANTC | 4 cut(s) | 4, 115, 458, 910 |
| HpaI | GTTAAC | 1 cut(s) | 574 |
| HpaII | CCGG | 4 cut(s) | 222, 296, 999, 1067 |
| HphI | GGTGA | 4 cut(s) | 274, 340, 506, 506 |
| Hpy166II | GTNNAC | 2 cut(s) | 497, 574 |
| Hpy188I | TCNGA | 1 cut(s) | 38 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 166, 187, 484, 952 |
| Hpy8I | GTNNAC | 2 cut(s) | 497, 574 |
| Hpy99I | CGWCG | 4 cut(s) | 235, 398, 611, 744 |
| HpyAV | CCTTC | 9 cut(s) | 172, 882, 910, 967, 988, 1027, 1048, 1078, 1133 |
| HpyCH4III | ACNGT | 4 cut(s) | 182, 244, 494, 761 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 606 |
| HpyCH4V | TGCA | 3 cut(s) | 316, 622, 1027 |
| HpyF3I | CTNAG | 1 cut(s) | 671 |
| HpySE526I | ACGT | 2 cut(s) | 426, 606 |
| Hsp92I | GRCGYC | 6 cut(s) | 159, 275, 641, 774, 1038, 1058 |
| Hsp92II | CATG | 6 cut(s) | 158, 178, 214, 595, 626, 852 |
| HspAI | GCGC | 5 cut(s) | 258, 275, 293, 331, 1038 |
| KasI | GGCGCC | 2 cut(s) | 274, 1037 |
| KspAI | GTTAAC | 1 cut(s) | 574 |
| KspI | CCGCGG | 1 cut(s) | 281 |
| Kzo9I | GATC | 4 cut(s) | 103, 189, 252, 864 |
| LmnI | GCTCC | 5 cut(s) | 364, 421, 667, 813, 840 |
| Lsp1109I | GCAGC | 2 cut(s) | 606, 1011 |
| LweI | GCATC | 2 cut(s) | 42, 754 |
| MaeII | ACGT | 2 cut(s) | 426, 606 |
| MaeIII | GTNAC | 1 cut(s) | 346 |
| MalI | GATC | 4 cut(s) | 105, 191, 254, 866 |
| MbiI | CCGCTC | 3 cut(s) | 413, 804, 816 |
| MboI | GATC | 4 cut(s) | 103, 189, 252, 864 |
| MboII | GAAGA | 3 cut(s) | 26, 250, 331 |
| MhlI | GDGCHC | 3 cut(s) | 31, 606, 1006 |
| MluCI | AATT | 1 cut(s) | 826 |
| Mly113I | GGCGCC | 2 cut(s) | 275, 1038 |
| MlyI | GAGTC | 3 cut(s) | 109, 452, 919 |
| MmeI | TCCRAC | 2 cut(s) | 342, 818 |
| MroXI | GAANNNNTTC | 1 cut(s) | 899 |
| MseI | TTAA | 2 cut(s) | 573, 935 |
| MspA1I | CMGCKG | 3 cut(s) | 280, 338, 906 |
| MspI | CCGG | 4 cut(s) | 222, 296, 999, 1067 |
| MspR9I | CCNGG | 4 cut(s) | 455, 716, 1007, 1128 |
| Mva1269I | GAATGC | 1 cut(s) | 439 |
| MvaI | CCWGG | 4 cut(s) | 455, 716, 1007, 1128 |
| MvnI | CGCG | 3 cut(s) | 167, 260, 280 |
| NarI | GGCGCC | 2 cut(s) | 275, 1038 |
| NcoI | CCATGG | 1 cut(s) | 174 |
| NdeII | GATC | 4 cut(s) | 103, 189, 252, 864 |
| NlaIII | CATG | 6 cut(s) | 158, 178, 214, 595, 626, 852 |
| NlaIV | GGNNCC | 5 cut(s) | 276, 366, 417, 1003, 1039 |
| NmeAIII | GCCGAG | 2 cut(s) | 502, 954 |
| NmuCI | GTSAC | 1 cut(s) | 346 |
| NruI | TCGCGA | 1 cut(s) | 167 |
| NspI | RCATGY | 1 cut(s) | 852 |
| PceI | AGGCCT | 1 cut(s) | 388 |
| PciI | ACATGT | 1 cut(s) | 848 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 380 |
| PctI | GAATGC | 1 cut(s) | 439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 899 |
| PflFI | GACNNNGTC | 1 cut(s) | 182 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1047 |
| PinAI | ACCGGT | 1 cut(s) | 1066 |
| PleI | GAGTC | 3 cut(s) | 109, 452, 918 |
| PluTI | GGCGCC | 2 cut(s) | 278, 1041 |
| PpsI | GAGTC | 3 cut(s) | 109, 452, 918 |
| PscI | ACATGT | 1 cut(s) | 848 |
| PshAI | GACNNNNGTC | 1 cut(s) | 72 |
| Psp6I | CCWGG | 4 cut(s) | 453, 714, 1005, 1126 |
| PspFI | CCCAGC | 3 cut(s) | 87, 136, 334 |
| PspGI | CCWGG | 4 cut(s) | 453, 714, 1005, 1126 |
| PspN4I | GGNNCC | 5 cut(s) | 276, 366, 417, 1003, 1039 |
| PspPI | GGNCC | 3 cut(s) | 178, 688, 712 |
| PsyI | GACNNNGTC | 1 cut(s) | 182 |
| RruI | TCGCGA | 1 cut(s) | 167 |
| RsaI | GTAC | 4 cut(s) | 215, 445, 558, 1108 |
| RsaNI | GTAC | 4 cut(s) | 214, 444, 557, 1107 |
| SacII | CCGCGG | 1 cut(s) | 281 |
| SaqAI | TTAA | 2 cut(s) | 573, 935 |
| Sau3AI | GATC | 4 cut(s) | 103, 189, 252, 864 |
| Sau96I | GGNCC | 3 cut(s) | 178, 688, 712 |
| ScaI | AGTACT | 1 cut(s) | 1108 |
| SchI | GAGTC | 3 cut(s) | 109, 452, 919 |
| ScrFI | CCNGG | 4 cut(s) | 455, 716, 1007, 1128 |
| SduI | GDGCHC | 3 cut(s) | 31, 606, 1006 |
| SfaNI | GCATC | 2 cut(s) | 42, 754 |
| SfcI | CTRYAG | 1 cut(s) | 692 |
| SfoI | GGCGCC | 2 cut(s) | 276, 1039 |
| Sfr303I | CCGCGG | 1 cut(s) | 281 |
| SgrBI | CCGCGG | 1 cut(s) | 281 |
| SinI | GGWCC | 1 cut(s) | 178 |
| Sse9I | AATT | 1 cut(s) | 826 |
| SseBI | AGGCCT | 1 cut(s) | 388 |
| SspDI | GGCGCC | 2 cut(s) | 274, 1037 |
| StuI | AGGCCT | 1 cut(s) | 388 |
| StyD4I | CCNGG | 4 cut(s) | 453, 714, 1005, 1126 |
| StyI | CCWWGG | 2 cut(s) | 174, 878 |
| TaaI | ACNGT | 4 cut(s) | 182, 244, 494, 761 |
| TaiI | ACGT | 2 cut(s) | 429, 609 |
| TaqI | TCGA | 5 cut(s) | 186, 192, 383, 735, 1044 |
| TaqII | GACCGA | 1 cut(s) | 998 |
| TasI | AATT | 1 cut(s) | 826 |
| TatI | WGTACW | 1 cut(s) | 1106 |
| Tru1I | TTAA | 2 cut(s) | 573, 935 |
| Tru9I | TTAA | 2 cut(s) | 573, 935 |
| TscAI | CASTG | 3 cut(s) | 249, 333, 984 |
| TseFI | GTSAC | 1 cut(s) | 346 |
| TseI | GCWGC | 2 cut(s) | 619, 1024 |
| Tsp45I | GTSAC | 1 cut(s) | 346 |
| TspGWI | ACGGA | 2 cut(s) | 62, 574 |
| TspRI | CASTG | 3 cut(s) | 249, 333, 984 |
| Tth111I | GACNNNGTC | 1 cut(s) | 182 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1047 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 521 |
| XceI | RCATGY | 1 cut(s) | 852 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 358 |
| XmnI | GAANNNNTTC | 1 cut(s) | 899 |
| ZrmI | AGTACT | 1 cut(s) | 1108 |