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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 599, 751 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 609, 665 |
| AccBSI | CCGCTC | 2 cut(s) | 241, 483 |
| AclWI | GGATC | 1 cut(s) | 801 |
| AcoI | YGGCCR | 6 cut(s) | 76, 163, 201, 378, 803, 876 |
| AcsI | RAATTY | 1 cut(s) | 188 |
| AcuI | CTGAAG | 2 cut(s) | 389, 750 |
| AcyI | GRCGYC | 1 cut(s) | 600 |
| AfaI | GTAC | 1 cut(s) | 487 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 11, 127, 469, 609, 665, 705, 741, 766 |
| AflII | CTTAAG | 1 cut(s) | 314 |
| AgsI | TTSAA | 1 cut(s) | 514 |
| AjiI | CACGTC | 1 cut(s) | 11 |
| AjnI | CCWGG | 5 cut(s) | 195, 623, 658, 685, 773 |
| AluBI | AGCT | 7 cut(s) | 153, 247, 289, 361, 466, 583, 923 |
| AluI | AGCT | 7 cut(s) | 153, 247, 289, 361, 466, 583, 923 |
| Alw26I | GTCTC | 3 cut(s) | 9, 147, 775 |
| AlwI | GGATC | 1 cut(s) | 801 |
| ApaI | GGGCCC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 5 cut(s) | 133, 136, 211, 244, 458 |
| ApoI | RAATTY | 1 cut(s) | 188 |
| AspLEI | GCGC | 1 cut(s) | 602 |
| AspS9I | GGNCC | 5 cut(s) | 25, 26, 627, 777, 813 |
| AsuC2I | CCSGG | 3 cut(s) | 282, 725, 802 |
| AsuHPI | GGTGA | 3 cut(s) | 565, 731, 896 |
| AvaII | GGWCC | 2 cut(s) | 627, 813 |
| AxyI | CCTNAGG | 1 cut(s) | 216 |
| BaeGI | GKGCMC | 3 cut(s) | 29, 756, 872 |
| BalI | TGGCCA | 1 cut(s) | 165 |
| BanI | GGYRCC | 2 cut(s) | 599, 751 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbvCI | CCTCAGC | 1 cut(s) | 432 |
| BbvI | GCAGC | 5 cut(s) | 120, 148, 223, 256, 445 |
| BccI | CCATC | 7 cut(s) | 27, 104, 182, 367, 538, 710, 824 |
| BceAI | ACGGC | 3 cut(s) | 91, 479, 634 |
| BciT130I | CCWGG | 5 cut(s) | 197, 625, 660, 687, 775 |
| BcnI | CCSGG | 3 cut(s) | 282, 725, 802 |
| BcoDI | GTCTC | 3 cut(s) | 9, 147, 775 |
| BfaI | CTAG | 3 cut(s) | 32, 222, 899 |
| BfmI | CTRYAG | 1 cut(s) | 134 |
| BfoI | RGCGCY | 1 cut(s) | 603 |
| BfrI | CTTAAG | 1 cut(s) | 314 |
| BlpI | GCTNAGC | 1 cut(s) | 207 |
| Bme1390I | CCNGG | 8 cut(s) | 197, 282, 625, 660, 687, 725, 775, 802 |
| Bme18I | GGWCC | 2 cut(s) | 627, 813 |
| BmgBI | CACGTC | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 5 cut(s) | 25, 26, 627, 777, 813 |
| BmiI | GGNNCC | 6 cut(s) | 26, 27, 601, 753, 814, 847 |
| BmrFI | CCNGG | 8 cut(s) | 197, 282, 625, 660, 687, 725, 775, 802 |
| BmrI | ACTGGG | 2 cut(s) | 236, 754 |
| BmsI | GCATC | 4 cut(s) | 256, 265, 496, 629 |
| BmuI | ACTGGG | 2 cut(s) | 236, 754 |
| BpmI | CTGGAG | 2 cut(s) | 488, 757 |
| Bpu10I | CCTNAGC | 1 cut(s) | 432 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 207 |
| BpuMI | CCSGG | 3 cut(s) | 282, 725, 802 |
| BsaHI | GRCGYC | 1 cut(s) | 600 |
| BsaI | GGTCTC | 3 cut(s) | 9, 147, 775 |
| BsaJI | CCNNGG | 7 cut(s) | 270, 381, 658, 659, 765, 774, 879 |
| BsaWI | WCCGGW | 1 cut(s) | 748 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 11, 127, 469, 609, 665, 705, 741, 766 |
| Bse118I | RCCGGY | 2 cut(s) | 336, 560 |
| Bse1I | ACTGG | 4 cut(s) | 79, 111, 231, 760 |
| Bse21I | CCTNAGG | 1 cut(s) | 216 |
| BseBI | CCWGG | 5 cut(s) | 197, 625, 660, 687, 775 |
| BseDI | CCNNGG | 7 cut(s) | 270, 381, 658, 659, 765, 774, 879 |
| BseGI | GGATG | 6 cut(s) | 115, 280, 511, 553, 620, 913 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 11, 127, 469, 609, 665, 705, 741, 766 |
| BseMII | CTCAG | 3 cut(s) | 207, 423, 480 |
| BseNI | ACTGG | 4 cut(s) | 79, 111, 231, 760 |
| BseRI | GAGGAG | 3 cut(s) | 493, 902, 933 |
| BseSI | GKGCMC | 3 cut(s) | 29, 756, 872 |
| BseX3I | CGGCCG | 2 cut(s) | 201, 803 |
| BseXI | GCAGC | 5 cut(s) | 120, 148, 223, 256, 445 |
| BseYI | CCCAGC | 4 cut(s) | 92, 462, 641, 827 |
| Bsh1285I | CGRYCG | 2 cut(s) | 204, 806 |
| BshNI | GGYRCC | 2 cut(s) | 599, 751 |
| BsiEI | CGRYCG | 2 cut(s) | 204, 806 |
| BsiSI | CCGG | 7 cut(s) | 282, 337, 561, 725, 749, 802, 806 |
| BslFI | GGGAC | 1 cut(s) | 826 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 11, 127, 469, 609, 665, 705, 741, 766 |
| BsmAI | GTCTC | 3 cut(s) | 9, 147, 775 |
| BsmFI | GGGAC | 1 cut(s) | 826 |
| BsmI | GAATGC | 1 cut(s) | 266 |
| Bso31I | GGTCTC | 3 cut(s) | 9, 147, 775 |
| Bsp120I | GGGCCC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 3 cut(s) | 29, 756, 872 |
| Bsp143I | GATC | 1 cut(s) | 793 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 207 |
| BspCNI | CTCAG | 3 cut(s) | 208, 424, 481 |
| BspLI | GGNNCC | 6 cut(s) | 26, 27, 601, 753, 814, 847 |
| BspMAI | CTGCAG | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 801 |
| BspT107I | GGYRCC | 2 cut(s) | 599, 751 |
| BspTI | CTTAAG | 1 cut(s) | 314 |
| BspTNI | GGTCTC | 3 cut(s) | 9, 147, 775 |
| BsrBI | CCGCTC | 2 cut(s) | 241, 483 |
| BsrFI | RCCGGY | 2 cut(s) | 336, 560 |
| BsrI | ACTGG | 4 cut(s) | 79, 111, 231, 760 |
| BssAI | RCCGGY | 2 cut(s) | 336, 560 |
| BssECI | CCNNGG | 7 cut(s) | 270, 381, 658, 659, 765, 774, 879 |
| BssMI | GATC | 1 cut(s) | 793 |
| BssNI | GRCGYC | 1 cut(s) | 600 |
| BssT1I | CCWWGG | 2 cut(s) | 270, 381 |
| Bst2UI | CCWGG | 5 cut(s) | 197, 625, 660, 687, 775 |
| Bst4CI | ACNGT | 2 cut(s) | 704, 838 |
| BstACI | GRCGYC | 1 cut(s) | 600 |
| BstAFI | CTTAAG | 1 cut(s) | 314 |
| BstC8I | GCNNGC | 6 cut(s) | 537, 634, 647, 692, 872, 876 |
| BstDEI | CTNAG | 5 cut(s) | 207, 216, 252, 432, 489 |
| BstEII | GGTNACC | 1 cut(s) | 719 |
| BstF5I | GGATG | 6 cut(s) | 115, 280, 511, 553, 620, 913 |
| BstH2I | RGCGCY | 1 cut(s) | 603 |
| BstHHI | GCGC | 1 cut(s) | 602 |
| BstKTI | GATC | 1 cut(s) | 796 |
| BstMAI | GTCTC | 3 cut(s) | 9, 147, 775 |
| BstMBI | GATC | 1 cut(s) | 793 |
| BstMCI | CGRYCG | 2 cut(s) | 204, 806 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 56, 238, 275, 367, 428, 506, 642, 691 |
| BstNI | CCWGG | 5 cut(s) | 197, 625, 660, 687, 775 |
| BstNSI | RCATGY | 2 cut(s) | 54, 539 |
| BstPI | GGTNACC | 1 cut(s) | 719 |
| BstSCI | CCNGG | 8 cut(s) | 195, 280, 623, 658, 685, 723, 773, 800 |
| BstSFI | CTRYAG | 1 cut(s) | 134 |
| BstSLI | GKGCMC | 3 cut(s) | 29, 756, 872 |
| BstV1I | GCAGC | 5 cut(s) | 120, 148, 223, 256, 445 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 787 |
| BstZI | CGGCCG | 2 cut(s) | 201, 803 |
| Bsu36I | CCTNAGG | 1 cut(s) | 216 |
| BtgZI | GCGATG | 1 cut(s) | 279 |
| BtrI | CACGTC | 1 cut(s) | 11 |
| BtsCI | GGATG | 6 cut(s) | 115, 280, 511, 553, 620, 913 |
| BtsIMutI | CAGTG | 2 cut(s) | 86, 709 |
| Cac8I | GCNNGC | 6 cut(s) | 537, 634, 647, 692, 872, 876 |
| CciNI | GCGGCCGC | 1 cut(s) | 201 |
| CfoI | GCGC | 1 cut(s) | 602 |
| Cfr10I | RCCGGY | 2 cut(s) | 336, 560 |
| Cfr13I | GGNCC | 5 cut(s) | 25, 26, 627, 777, 813 |
| Csp6I | GTAC | 1 cut(s) | 486 |
| CviAII | CATG | 5 cut(s) | 51, 185, 536, 842, 865 |
| CviQI | GTAC | 1 cut(s) | 486 |
| DdeI | CTNAG | 5 cut(s) | 207, 216, 252, 432, 489 |
| DinI | GGCGCC | 1 cut(s) | 601 |
| DpnI | GATC | 1 cut(s) | 795 |
| DpnII | GATC | 1 cut(s) | 793 |
| EaeI | YGGCCR | 6 cut(s) | 76, 163, 201, 378, 803, 876 |
| EagI | CGGCCG | 2 cut(s) | 201, 803 |
| EciI | GGCGGA | 4 cut(s) | 272, 488, 619, 806 |
| EclXI | CGGCCG | 2 cut(s) | 201, 803 |
| Eco130I | CCWWGG | 2 cut(s) | 270, 381 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco31I | GGTCTC | 3 cut(s) | 9, 147, 775 |
| Eco47I | GGWCC | 2 cut(s) | 627, 813 |
| Eco52I | CGGCCG | 2 cut(s) | 201, 803 |
| Eco57I | CTGAAG | 2 cut(s) | 389, 750 |
| Eco81I | CCTNAGG | 1 cut(s) | 216 |
| Eco91I | GGTNACC | 1 cut(s) | 719 |
| EcoO109I | RGGNCCY | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 719 |
| EcoRII | CCWGG | 5 cut(s) | 195, 623, 658, 685, 773 |
| EcoT14I | CCWWGG | 2 cut(s) | 270, 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| EgeI | GGCGCC | 1 cut(s) | 601 |
| EheI | GGCGCC | 1 cut(s) | 601 |
| ErhI | CCWWGG | 2 cut(s) | 270, 381 |
| FaeI | CATG | 5 cut(s) | 54, 188, 539, 845, 868 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 524, 556 |
| FaqI | GGGAC | 1 cut(s) | 826 |
| FatI | CATG | 5 cut(s) | 50, 184, 535, 841, 864 |
| FokI | GGATG | 6 cut(s) | 122, 287, 518, 560, 607, 920 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| FspBI | CTAG | 3 cut(s) | 32, 222, 899 |
| GlaI | GCGC | 1 cut(s) | 601 |
| GsaI | CCCAGC | 4 cut(s) | 96, 466, 645, 831 |
| GsuI | CTGGAG | 2 cut(s) | 488, 757 |
| HaeII | RGCGCY | 1 cut(s) | 603 |
| HapII | CCGG | 7 cut(s) | 282, 337, 561, 725, 749, 802, 806 |
| HhaI | GCGC | 1 cut(s) | 602 |
| Hin1I | GRCGYC | 1 cut(s) | 600 |
| Hin1II | CATG | 5 cut(s) | 54, 188, 539, 845, 868 |
| Hin6I | GCGC | 1 cut(s) | 600 |
| HinP1I | GCGC | 1 cut(s) | 600 |
| HinfI | GANTC | 1 cut(s) | 745 |
| HpaII | CCGG | 7 cut(s) | 282, 337, 561, 725, 749, 802, 806 |
| HphI | GGTGA | 3 cut(s) | 565, 731, 896 |
| Hpy188I | TCNGA | 4 cut(s) | 408, 700, 766, 850 |
| Hpy188III | TCNNGA | 2 cut(s) | 388, 820 |
| Hpy99I | CGWCG | 3 cut(s) | 12, 77, 500 |
| HpyAV | CCTTC | 3 cut(s) | 520, 550, 610 |
| HpyCH4III | ACNGT | 2 cut(s) | 704, 838 |
| HpyCH4IV | ACGT | 2 cut(s) | 10, 117 |
| HpyCH4V | TGCA | 6 cut(s) | 136, 184, 346, 694, 841, 864 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 56, 238, 275, 367, 428, 506, 642, 691 |
| HpyF3I | CTNAG | 5 cut(s) | 207, 216, 252, 432, 489 |
| HpySE526I | ACGT | 2 cut(s) | 10, 117 |
| Hsp92I | GRCGYC | 1 cut(s) | 600 |
| Hsp92II | CATG | 5 cut(s) | 54, 188, 539, 845, 868 |
| HspAI | GCGC | 1 cut(s) | 600 |
| KasI | GGCGCC | 1 cut(s) | 599 |
| Kzo9I | GATC | 1 cut(s) | 793 |
| LmnI | GCTCC | 5 cut(s) | 238, 283, 480, 889, 920 |
| Lsp1109I | GCAGC | 5 cut(s) | 120, 148, 223, 256, 445 |
| LweI | GCATC | 4 cut(s) | 256, 265, 496, 629 |
| MaeI | CTAG | 3 cut(s) | 32, 222, 899 |
| MaeII | ACGT | 2 cut(s) | 10, 117 |
| MaeIII | GTNAC | 1 cut(s) | 719 |
| MalI | GATC | 1 cut(s) | 795 |
| MbiI | CCGCTC | 2 cut(s) | 241, 483 |
| MboI | GATC | 1 cut(s) | 793 |
| MboII | GAAGA | 2 cut(s) | 50, 395 |
| MhlI | GDGCHC | 3 cut(s) | 29, 756, 872 |
| MlsI | TGGCCA | 1 cut(s) | 165 |
| MluCI | AATT | 1 cut(s) | 188 |
| MluNI | TGGCCA | 1 cut(s) | 165 |
| Mly113I | GGCGCC | 1 cut(s) | 600 |
| MlyI | GAGTC | 1 cut(s) | 739 |
| MmeI | TCCRAC | 3 cut(s) | 79, 723, 873 |
| Mox20I | TGGCCA | 1 cut(s) | 165 |
| MscI | TGGCCA | 1 cut(s) | 165 |
| MseI | TTAA | 1 cut(s) | 315 |
| Msp20I | TGGCCA | 1 cut(s) | 165 |
| MspA1I | CMGCKG | 5 cut(s) | 139, 247, 361, 431, 466 |
| MspCI | CTTAAG | 1 cut(s) | 314 |
| MspI | CCGG | 7 cut(s) | 282, 337, 561, 725, 749, 802, 806 |
| MspR9I | CCNGG | 8 cut(s) | 197, 282, 625, 660, 687, 725, 775, 802 |
| Mva1269I | GAATGC | 1 cut(s) | 266 |
| MvaI | CCWGG | 5 cut(s) | 197, 625, 660, 687, 775 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 56, 238, 275, 367, 428, 506, 642, 691 |
| NarI | GGCGCC | 1 cut(s) | 600 |
| NciI | CCSGG | 3 cut(s) | 282, 725, 802 |
| NdeII | GATC | 1 cut(s) | 793 |
| NlaIII | CATG | 5 cut(s) | 54, 188, 539, 845, 868 |
| NlaIV | GGNNCC | 6 cut(s) | 26, 27, 601, 753, 814, 847 |
| NmeAIII | GCCGAG | 2 cut(s) | 134, 904 |
| NmuCI | GTSAC | 1 cut(s) | 719 |
| NotI | GCGGCCGC | 1 cut(s) | 201 |
| NspI | RCATGY | 2 cut(s) | 54, 539 |
| PaeI | GCATGC | 1 cut(s) | 539 |
| PasI | CCCWGGG | 1 cut(s) | 659 |
| PctI | GAATGC | 1 cut(s) | 266 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 609, 665 |
| PfoI | TCCNGGA | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 739 |
| PluTI | GGCGCC | 1 cut(s) | 603 |
| PpsI | GAGTC | 1 cut(s) | 739 |
| Psp6I | CCWGG | 5 cut(s) | 195, 623, 658, 685, 773 |
| PspEI | GGTNACC | 1 cut(s) | 719 |
| PspFI | CCCAGC | 4 cut(s) | 92, 462, 641, 827 |
| PspGI | CCWGG | 5 cut(s) | 195, 623, 658, 685, 773 |
| PspN4I | GGNNCC | 6 cut(s) | 26, 27, 601, 753, 814, 847 |
| PspOMI | GGGCCC | 1 cut(s) | 25 |
| PspPI | GGNCC | 5 cut(s) | 25, 26, 627, 777, 813 |
| PstI | CTGCAG | 1 cut(s) | 138 |
| PvuII | CAGCTG | 3 cut(s) | 247, 361, 466 |
| RsaI | GTAC | 1 cut(s) | 487 |
| RsaNI | GTAC | 1 cut(s) | 486 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| Sau3AI | GATC | 1 cut(s) | 793 |
| Sau96I | GGNCC | 5 cut(s) | 25, 26, 627, 777, 813 |
| SchI | GAGTC | 1 cut(s) | 739 |
| ScrFI | CCNGG | 8 cut(s) | 197, 282, 625, 660, 687, 725, 775, 802 |
| SduI | GDGCHC | 3 cut(s) | 29, 756, 872 |
| SfaNI | GCATC | 4 cut(s) | 256, 265, 496, 629 |
| SfcI | CTRYAG | 1 cut(s) | 134 |
| SfoI | GGCGCC | 1 cut(s) | 601 |
| SinI | GGWCC | 2 cut(s) | 627, 813 |
| SmlI | CTYRAG | 1 cut(s) | 314 |
| SmoI | CTYRAG | 1 cut(s) | 314 |
| SphI | GCATGC | 1 cut(s) | 539 |
| Sse9I | AATT | 1 cut(s) | 188 |
| SspDI | GGCGCC | 1 cut(s) | 599 |
| SspMI | CTAG | 3 cut(s) | 32, 222, 899 |
| StyD4I | CCNGG | 8 cut(s) | 195, 280, 623, 658, 685, 723, 773, 800 |
| StyI | CCWWGG | 2 cut(s) | 270, 381 |
| TaaI | ACNGT | 2 cut(s) | 704, 838 |
| TaiI | ACGT | 2 cut(s) | 13, 120 |
| TaqI | TCGA | 4 cut(s) | 177, 614, 796, 903 |
| TasI | AATT | 1 cut(s) | 188 |
| TauI | GCSGC | 6 cut(s) | 203, 206, 244, 380, 422, 527 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TscAI | CASTG | 2 cut(s) | 86, 709 |
| TseFI | GTSAC | 1 cut(s) | 719 |
| TseI | GCWGC | 5 cut(s) | 133, 136, 211, 244, 458 |
| Tsp45I | GTSAC | 1 cut(s) | 719 |
| TspDTI | ATGAA | 2 cut(s) | 201, 605 |
| TspGWI | ACGGA | 2 cut(s) | 110, 757 |
| TspRI | CASTG | 2 cut(s) | 86, 709 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 609, 665 |
| Vha464I | CTTAAG | 1 cut(s) | 314 |
| VpaK11BI | GGWCC | 2 cut(s) | 627, 813 |
| XapI | RAATTY | 1 cut(s) | 188 |
| XceI | RCATGY | 2 cut(s) | 54, 539 |
| XspI | CTAG | 3 cut(s) | 32, 222, 899 |