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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 113 |
| AccB1I | GGYRCC | 1 cut(s) | 809 |
| AccBSI | CCGCTC | 1 cut(s) | 379 |
| AccI | GTMKAC | 1 cut(s) | 189 |
| AccII | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| AclWI | GGATC | 2 cut(s) | 71, 231 |
| AcoI | YGGCCR | 4 cut(s) | 179, 394, 624, 1040 |
| AcuI | CTGAAG | 3 cut(s) | 350, 506, 926 |
| AfaI | GTAC | 2 cut(s) | 172, 776 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 201, 597, 968, 1035 |
| AgeI | ACCGGT | 1 cut(s) | 968 |
| AgsI | TTSAA | 4 cut(s) | 19, 55, 415, 760 |
| AjiI | CACGTC | 1 cut(s) | 1026 |
| AjnI | CCWGG | 2 cut(s) | 342, 570 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 11, 43, 479, 511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 23, 55 |
| AluBI | AGCT | 9 cut(s) | 270, 384, 421, 463, 580, 617, 622, 704, 874 |
| AluI | AGCT | 9 cut(s) | 270, 384, 421, 463, 580, 617, 622, 704, 874 |
| Alw21I | GWGCWC | 2 cut(s) | 147, 423 |
| Alw26I | GTCTC | 2 cut(s) | 439, 1025 |
| Alw44I | GTGCAC | 1 cut(s) | 143 |
| AlwI | GGATC | 2 cut(s) | 71, 231 |
| AoxI | GGCC | 6 cut(s) | 179, 214, 387, 394, 624, 1040 |
| ApaLI | GTGCAC | 1 cut(s) | 143 |
| ApeKI | GCWGC | 5 cut(s) | 517, 737, 740, 871, 874 |
| AsiGI | ACCGGT | 1 cut(s) | 968 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 645 |
| AspLEI | GCGC | 4 cut(s) | 263, 470, 690, 942 |
| AspS9I | GGNCC | 2 cut(s) | 215, 982 |
| AsuC2I | CCSGG | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 4 cut(s) | 320, 366, 859, 986 |
| AvaII | GGWCC | 1 cut(s) | 982 |
| BaeGI | GKGCMC | 1 cut(s) | 147 |
| BalI | TGGCCA | 2 cut(s) | 396, 626 |
| BanI | GGYRCC | 1 cut(s) | 809 |
| BanII | GRGCYC | 1 cut(s) | 423 |
| BauI | CACGAG | 1 cut(s) | 1049 |
| Bbv12I | GWGCWC | 2 cut(s) | 147, 423 |
| BbvCI | CCTCAGC | 3 cut(s) | 303, 705, 986 |
| BbvI | GCAGC | 5 cut(s) | 504, 724, 727, 861, 883 |
| BccI | CCATC | 4 cut(s) | 405, 451, 791, 1051 |
| BceAI | ACGGC | 1 cut(s) | 575 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 744, 778 |
| BciT130I | CCWGG | 2 cut(s) | 344, 572 |
| BcnI | CCSGG | 1 cut(s) | 599 |
| BcoDI | GTCTC | 2 cut(s) | 439, 1025 |
| BfoI | RGCGCY | 1 cut(s) | 691 |
| BisI | GCNGC | 9 cut(s) | 290, 515, 518, 738, 741, 872, 875, 895, 1040 |
| BlpI | GCTNAGC | 3 cut(s) | 380, 453, 618 |
| BlsI | GCNGC | 9 cut(s) | 291, 516, 519, 739, 742, 873, 876, 896, 1041 |
| Bme1390I | CCNGG | 3 cut(s) | 344, 572, 599 |
| Bme18I | GGWCC | 1 cut(s) | 982 |
| BmgBI | CACGTC | 1 cut(s) | 1026 |
| BmgT120I | GGNCC | 2 cut(s) | 215, 982 |
| BmiI | GGNNCC | 1 cut(s) | 811 |
| BmrFI | CCNGG | 3 cut(s) | 344, 572, 599 |
| BmrI | ACTGGG | 1 cut(s) | 865 |
| BmsI | GCATC | 4 cut(s) | 556, 772, 936, 1005 |
| BmuI | ACTGGG | 1 cut(s) | 865 |
| BoxI | GACNNNNGTC | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 3 cut(s) | 303, 705, 986 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 380, 453, 618 |
| BpuMI | CCSGG | 1 cut(s) | 599 |
| BsaI | GGTCTC | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 6 cut(s) | 176, 342, 343, 570, 672, 840 |
| BsaWI | WCCGGW | 1 cut(s) | 968 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 201, 597, 968, 1035 |
| Bse118I | RCCGGY | 1 cut(s) | 968 |
| Bse1I | ACTGG | 1 cut(s) | 860 |
| Bse3DI | GCAATG | 1 cut(s) | 922 |
| BseBI | CCWGG | 2 cut(s) | 344, 572 |
| BseDI | CCNNGG | 6 cut(s) | 176, 342, 343, 570, 672, 840 |
| BseGI | GGATG | 6 cut(s) | 443, 571, 589, 787, 927, 1009 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 201, 597, 968, 1035 |
| BseMI | GCAATG | 1 cut(s) | 922 |
| BseMII | CTCAG | 7 cut(s) | 294, 394, 444, 609, 696, 931, 1000 |
| BseNI | ACTGG | 1 cut(s) | 860 |
| BseRI | GAGGAG | 2 cut(s) | 326, 692 |
| BseSI | GKGCMC | 1 cut(s) | 147 |
| BseXI | GCAGC | 5 cut(s) | 504, 724, 727, 861, 883 |
| BseYI | CCCAGC | 1 cut(s) | 711 |
| BsgI | GTGCAG | 1 cut(s) | 890 |
| Bsh1236I | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| Bsh1285I | CGRYCG | 1 cut(s) | 339 |
| BshFI | GGCC | 6 cut(s) | 181, 216, 389, 396, 626, 1042 |
| BshNI | GGYRCC | 1 cut(s) | 809 |
| BshTI | ACCGGT | 1 cut(s) | 968 |
| BsiEI | CGRYCG | 1 cut(s) | 339 |
| BsiHKAI | GWGCWC | 2 cut(s) | 147, 423 |
| BsiSI | CCGG | 3 cut(s) | 221, 598, 969 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 201, 597, 968, 1035 |
| BsmAI | GTCTC | 2 cut(s) | 439, 1025 |
| BsmBI | CGTCTC | 1 cut(s) | 1025 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsmI | GAATGC | 1 cut(s) | 755 |
| BsnI | GGCC | 6 cut(s) | 181, 216, 389, 396, 626, 1042 |
| Bso31I | GGTCTC | 1 cut(s) | 439 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 423 |
| Bsp143I | GATC | 4 cut(s) | 76, 223, 336, 604 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 380, 453, 618 |
| BspANI | GGCC | 6 cut(s) | 181, 216, 389, 396, 626, 1042 |
| BspCNI | CTCAG | 7 cut(s) | 295, 393, 445, 610, 697, 930, 999 |
| BspFNI | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| BspLI | GGNNCC | 1 cut(s) | 811 |
| BspPI | GGATC | 2 cut(s) | 71, 231 |
| BspT107I | GGYRCC | 1 cut(s) | 809 |
| BspTNI | GGTCTC | 1 cut(s) | 439 |
| BsrBI | CCGCTC | 1 cut(s) | 379 |
| BsrDI | GCAATG | 1 cut(s) | 922 |
| BsrFI | RCCGGY | 1 cut(s) | 968 |
| BsrI | ACTGG | 1 cut(s) | 860 |
| BssAI | RCCGGY | 1 cut(s) | 968 |
| BssECI | CCNNGG | 6 cut(s) | 176, 342, 343, 570, 672, 840 |
| BssMI | GATC | 4 cut(s) | 76, 223, 336, 604 |
| BssSI | CACGAG | 1 cut(s) | 1049 |
| BssT1I | CCWWGG | 3 cut(s) | 176, 672, 840 |
| Bst2BI | CACGAG | 1 cut(s) | 1049 |
| Bst2UI | CCWGG | 2 cut(s) | 344, 572 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 482 |
| Bst6I | CTCTTC | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 218, 624 |
| BstDEI | CTNAG | 7 cut(s) | 303, 380, 453, 618, 705, 917, 986 |
| BstEII | GGTNACC | 1 cut(s) | 372 |
| BstF5I | GGATG | 6 cut(s) | 443, 571, 589, 787, 927, 1009 |
| BstFNI | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| BstH2I | RGCGCY | 1 cut(s) | 691 |
| BstHHI | GCGC | 4 cut(s) | 263, 470, 690, 942 |
| BstKTI | GATC | 4 cut(s) | 79, 226, 339, 607 |
| BstMAI | GTCTC | 2 cut(s) | 439, 1025 |
| BstMBI | GATC | 4 cut(s) | 76, 223, 336, 604 |
| BstMCI | CGRYCG | 1 cut(s) | 339 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 267, 376, 623 |
| BstNI | CCWGG | 2 cut(s) | 344, 572 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 71 |
| BstPI | GGTNACC | 1 cut(s) | 372 |
| BstSCI | CCNGG | 3 cut(s) | 342, 570, 597 |
| BstSLI | GKGCMC | 1 cut(s) | 147 |
| BstUI | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| BstV1I | GCAGC | 5 cut(s) | 504, 724, 727, 861, 883 |
| BsuRI | GGCC | 6 cut(s) | 181, 216, 389, 396, 626, 1042 |
| BtrI | CACGTC | 1 cut(s) | 1026 |
| BtsCI | GGATG | 6 cut(s) | 443, 571, 589, 787, 927, 1009 |
| BtsI | GCAGTG | 1 cut(s) | 957 |
| BtsIMutI | CAGTG | 3 cut(s) | 853, 902, 957 |
| Cac8I | GCNNGC | 2 cut(s) | 218, 624 |
| CfoI | GCGC | 4 cut(s) | 263, 470, 690, 942 |
| Cfr10I | RCCGGY | 1 cut(s) | 968 |
| Cfr13I | GGNCC | 2 cut(s) | 215, 982 |
| CseI | GACGC | 4 cut(s) | 308, 640, 799, 1007 |
| Csp6I | GTAC | 2 cut(s) | 171, 775 |
| CspAI | ACCGGT | 1 cut(s) | 968 |
| CviAII | CATG | 3 cut(s) | 37, 110, 232 |
| CviQI | GTAC | 2 cut(s) | 171, 775 |
| DdeI | CTNAG | 7 cut(s) | 303, 380, 453, 618, 705, 917, 986 |
| DpnI | GATC | 4 cut(s) | 78, 225, 338, 606 |
| DpnII | GATC | 4 cut(s) | 76, 223, 336, 604 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 113 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 113 |
| EaeI | YGGCCR | 4 cut(s) | 179, 394, 624, 1040 |
| Eam1104I | CTCTTC | 1 cut(s) | 278 |
| EarI | CTCTTC | 1 cut(s) | 278 |
| EciI | GGCGGA | 1 cut(s) | 563 |
| Ecl136II | GAGCTC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 3 cut(s) | 176, 672, 840 |
| Eco24I | GRGCYC | 1 cut(s) | 423 |
| Eco31I | GGTCTC | 1 cut(s) | 439 |
| Eco47I | GGWCC | 1 cut(s) | 982 |
| Eco53kI | GAGCTC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 3 cut(s) | 350, 506, 926 |
| Eco91I | GGTNACC | 1 cut(s) | 372 |
| EcoICRI | GAGCTC | 1 cut(s) | 421 |
| EcoO109I | RGGNCCY | 1 cut(s) | 982 |
| EcoO65I | GGTNACC | 1 cut(s) | 372 |
| EcoRII | CCWGG | 2 cut(s) | 342, 570 |
| EcoT14I | CCWWGG | 3 cut(s) | 176, 672, 840 |
| EcoT38I | GRGCYC | 1 cut(s) | 423 |
| ErhI | CCWWGG | 3 cut(s) | 176, 672, 840 |
| Esp3I | CGTCTC | 1 cut(s) | 1025 |
| FaeI | CATG | 3 cut(s) | 40, 113, 235 |
| FaiI | YATR | 7 cut(s) | 38, 101, 111, 233, 332, 803, 1036 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 3 cut(s) | 36, 109, 231 |
| FauI | CCCGC | 1 cut(s) | 225 |
| FblI | GTMKAC | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 9 cut(s) | 290, 515, 518, 738, 741, 872, 875, 895, 1040 |
| FokI | GGATG | 6 cut(s) | 430, 578, 596, 794, 914, 996 |
| FriOI | GRGCYC | 1 cut(s) | 423 |
| Fsp4HI | GCNGC | 9 cut(s) | 290, 515, 518, 738, 741, 872, 875, 895, 1040 |
| GlaI | GCGC | 4 cut(s) | 262, 469, 689, 941 |
| GluI | GCNGC | 9 cut(s) | 290, 515, 518, 738, 741, 872, 875, 895, 1040 |
| GsaI | CCCAGC | 1 cut(s) | 715 |
| HaeII | RGCGCY | 1 cut(s) | 691 |
| HaeIII | GGCC | 6 cut(s) | 181, 216, 389, 396, 626, 1042 |
| HapII | CCGG | 3 cut(s) | 221, 598, 969 |
| HgaI | GACGC | 4 cut(s) | 308, 640, 799, 1007 |
| HhaI | GCGC | 4 cut(s) | 263, 470, 690, 942 |
| Hin1II | CATG | 3 cut(s) | 40, 113, 235 |
| Hin6I | GCGC | 4 cut(s) | 261, 468, 688, 940 |
| HinP1I | GCGC | 4 cut(s) | 261, 468, 688, 940 |
| HincII | GTYRAC | 3 cut(s) | 190, 350, 478 |
| HindII | GTYRAC | 3 cut(s) | 190, 350, 478 |
| HinfI | GANTC | 2 cut(s) | 850, 958 |
| HpaII | CCGG | 3 cut(s) | 221, 598, 969 |
| HphI | GGTGA | 4 cut(s) | 320, 366, 859, 986 |
| Hpy166II | GTNNAC | 5 cut(s) | 145, 190, 350, 478, 556 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 486, 1014 |
| Hpy188III | TCNNGA | 2 cut(s) | 508, 1051 |
| Hpy8I | GTNNAC | 5 cut(s) | 145, 190, 350, 478, 556 |
| Hpy99I | CGWCG | 5 cut(s) | 77, 160, 702, 752, 769 |
| HpyAV | CCTTC | 9 cut(s) | 26, 49, 178, 195, 237, 538, 763, 901, 973 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 482 |
| HpyCH4IV | ACGT | 3 cut(s) | 697, 1006, 1025 |
| HpyCH4V | TGCA | 6 cut(s) | 145, 520, 634, 871, 877, 927 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 267, 376, 623 |
| HpyF3I | CTNAG | 7 cut(s) | 303, 380, 453, 618, 705, 917, 986 |
| HpySE526I | ACGT | 3 cut(s) | 697, 1006, 1025 |
| Hsp92II | CATG | 3 cut(s) | 40, 113, 235 |
| HspAI | GCGC | 4 cut(s) | 261, 468, 688, 940 |
| Kzo9I | GATC | 4 cut(s) | 76, 223, 336, 604 |
| LmnI | GCTCC | 1 cut(s) | 267 |
| Lsp1109I | GCAGC | 5 cut(s) | 504, 724, 727, 861, 883 |
| LweI | GCATC | 4 cut(s) | 556, 772, 936, 1005 |
| MaeII | ACGT | 3 cut(s) | 697, 1006, 1025 |
| MaeIII | GTNAC | 2 cut(s) | 372, 952 |
| MalI | GATC | 4 cut(s) | 78, 225, 338, 606 |
| MbiI | CCGCTC | 1 cut(s) | 379 |
| MboI | GATC | 4 cut(s) | 76, 223, 336, 604 |
| MboII | GAAGA | 5 cut(s) | 73, 292, 295, 650, 1066 |
| MhlI | GDGCHC | 2 cut(s) | 147, 423 |
| MlsI | TGGCCA | 2 cut(s) | 396, 626 |
| MluCI | AATT | 2 cut(s) | 22, 642 |
| MluNI | TGGCCA | 2 cut(s) | 396, 626 |
| MmeI | TCCRAC | 2 cut(s) | 388, 477 |
| Mox20I | TGGCCA | 2 cut(s) | 396, 626 |
| MroXI | GAANNNNTTC | 1 cut(s) | 645 |
| MscI | TGGCCA | 2 cut(s) | 396, 626 |
| MseI | TTAA | 1 cut(s) | 834 |
| Msp20I | TGGCCA | 2 cut(s) | 396, 626 |
| MspA1I | CMGCKG | 2 cut(s) | 370, 874 |
| MspI | CCGG | 3 cut(s) | 221, 598, 969 |
| MspR9I | CCNGG | 3 cut(s) | 344, 572, 599 |
| Mva1269I | GAATGC | 1 cut(s) | 755 |
| MvaI | CCWGG | 2 cut(s) | 344, 572 |
| MvnI | CGCG | 5 cut(s) | 261, 470, 651, 818, 942 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 267, 376, 623 |
| NciI | CCSGG | 1 cut(s) | 599 |
| NdeII | GATC | 4 cut(s) | 76, 223, 336, 604 |
| NlaIII | CATG | 3 cut(s) | 40, 113, 235 |
| NlaIV | GGNNCC | 1 cut(s) | 811 |
| NmeAIII | GCCGAG | 2 cut(s) | 192, 365 |
| NmuCI | GTSAC | 2 cut(s) | 372, 952 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PasI | CCCWGGG | 1 cut(s) | 343 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 164 |
| PctI | GAATGC | 1 cut(s) | 755 |
| PdmI | GAANNNNTTC | 1 cut(s) | 645 |
| PfeI | GAWTC | 2 cut(s) | 850, 958 |
| PinAI | ACCGGT | 1 cut(s) | 968 |
| PkrI | GCNGC | 9 cut(s) | 291, 516, 519, 739, 742, 873, 876, 896, 1041 |
| Ple19I | CGATCG | 1 cut(s) | 339 |
| PpuMI | RGGWCCY | 1 cut(s) | 982 |
| PshAI | GACNNNNGTC | 1 cut(s) | 71 |
| Psp124BI | GAGCTC | 1 cut(s) | 423 |
| Psp5II | RGGWCCY | 1 cut(s) | 982 |
| Psp6I | CCWGG | 2 cut(s) | 342, 570 |
| PspEI | GGTNACC | 1 cut(s) | 372 |
| PspFI | CCCAGC | 1 cut(s) | 711 |
| PspGI | CCWGG | 2 cut(s) | 342, 570 |
| PspN4I | GGNNCC | 1 cut(s) | 811 |
| PspPI | GGNCC | 2 cut(s) | 215, 982 |
| PspPPI | RGGWCCY | 1 cut(s) | 982 |
| PvuI | CGATCG | 1 cut(s) | 339 |
| PvuII | CAGCTG | 1 cut(s) | 874 |
| RsaI | GTAC | 2 cut(s) | 172, 776 |
| RsaNI | GTAC | 2 cut(s) | 171, 775 |
| SacI | GAGCTC | 1 cut(s) | 423 |
| SalI | GTCGAC | 1 cut(s) | 188 |
| SaqAI | TTAA | 1 cut(s) | 834 |
| SatI | GCNGC | 9 cut(s) | 290, 515, 518, 738, 741, 872, 875, 895, 1040 |
| Sau3AI | GATC | 4 cut(s) | 76, 223, 336, 604 |
| Sau96I | GGNCC | 2 cut(s) | 215, 982 |
| ScrFI | CCNGG | 3 cut(s) | 344, 572, 599 |
| SduI | GDGCHC | 2 cut(s) | 147, 423 |
| SfaNI | GCATC | 4 cut(s) | 556, 772, 936, 1005 |
| SinI | GGWCC | 1 cut(s) | 982 |
| Sse9I | AATT | 2 cut(s) | 22, 642 |
| SstI | GAGCTC | 1 cut(s) | 423 |
| StyD4I | CCNGG | 3 cut(s) | 342, 570, 597 |
| StyI | CCWWGG | 3 cut(s) | 176, 672, 840 |
| TaaI | ACNGT | 2 cut(s) | 73, 482 |
| TaiI | ACGT | 3 cut(s) | 700, 1009, 1028 |
| TaqI | TCGA | 6 cut(s) | 75, 189, 335, 700, 750, 767 |
| TasI | AATT | 2 cut(s) | 22, 642 |
| TatI | WGTACW | 1 cut(s) | 774 |
| TauI | GCSGC | 4 cut(s) | 292, 517, 897, 1042 |
| TfiI | GAWTC | 2 cut(s) | 850, 958 |
| Tru1I | TTAA | 1 cut(s) | 834 |
| Tru9I | TTAA | 1 cut(s) | 834 |
| TscAI | CASTG | 3 cut(s) | 860, 909, 957 |
| TseFI | GTSAC | 2 cut(s) | 372, 952 |
| TseI | GCWGC | 5 cut(s) | 517, 737, 740, 871, 874 |
| Tsp45I | GTSAC | 2 cut(s) | 372, 952 |
| TspGWI | ACGGA | 3 cut(s) | 144, 290, 1018 |
| TspRI | CASTG | 3 cut(s) | 860, 909, 957 |
| VneI | GTGCAC | 1 cut(s) | 143 |
| VpaK11BI | GGWCC | 1 cut(s) | 982 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 404 |
| XmiI | GTMKAC | 1 cut(s) | 189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 645 |