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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 560 |
| AccB1I | GGYRCC | 4 cut(s) | 135, 344, 437, 560 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 354 |
| AccBSI | CCGCTC | 2 cut(s) | 58, 211 |
| AccII | CGCG | 2 cut(s) | 174, 407 |
| AclWI | GGATC | 2 cut(s) | 267, 286 |
| AcuI | CTGAAG | 1 cut(s) | 275 |
| AcyI | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| AdeI | CACNNNGTG | 1 cut(s) | 268 |
| AfaI | GTAC | 1 cut(s) | 562 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 145, 256, 301, 354, 410 |
| AgsI | TTSAA | 1 cut(s) | 299 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 609 |
| AjiI | CACGTC | 1 cut(s) | 205 |
| AluBI | AGCT | 3 cut(s) | 64, 97, 181 |
| AluI | AGCT | 3 cut(s) | 64, 97, 181 |
| Alw26I | GTCTC | 6 cut(s) | 89, 98, 229, 422, 523, 638 |
| AlwI | GGATC | 2 cut(s) | 267, 286 |
| Ama87I | CYCGRG | 1 cut(s) | 48 |
| ApeKI | GCWGC | 4 cut(s) | 32, 43, 61, 539 |
| Asp718I | GGTACC | 1 cut(s) | 560 |
| AspLEI | GCGC | 3 cut(s) | 138, 347, 409 |
| AspS9I | GGNCC | 1 cut(s) | 594 |
| AsuC2I | CCSGG | 2 cut(s) | 49, 50 |
| AsuHPI | GGTGA | 3 cut(s) | 176, 340, 653 |
| AvaI | CYCGRG | 1 cut(s) | 48 |
| AvaII | GGWCC | 1 cut(s) | 594 |
| AxyI | CCTNAGG | 1 cut(s) | 636 |
| BaeGI | GKGCMC | 1 cut(s) | 442 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 552, 585 |
| BanI | GGYRCC | 4 cut(s) | 135, 344, 437, 560 |
| BanII | GRGCYC | 1 cut(s) | 581 |
| BauI | CACGAG | 1 cut(s) | 588 |
| BbvCI | CCTCAGC | 1 cut(s) | 324 |
| BbvI | GCAGC | 4 cut(s) | 44, 55, 73, 526 |
| BccI | CCATC | 1 cut(s) | 551 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BcnI | CCSGG | 2 cut(s) | 49, 50 |
| BcoDI | GTCTC | 6 cut(s) | 89, 98, 229, 422, 523, 638 |
| BfoI | RGCGCY | 2 cut(s) | 139, 348 |
| BisI | GCNGC | 8 cut(s) | 33, 44, 59, 62, 175, 312, 540, 651 |
| BlsI | GCNGC | 8 cut(s) | 34, 45, 60, 63, 176, 313, 541, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 49, 50 |
| Bme18I | GGWCC | 1 cut(s) | 594 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 609 |
| BmeT110I | CYCGRG | 1 cut(s) | 48 |
| BmgBI | CACGTC | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 1 cut(s) | 594 |
| BmiI | GGNNCC | 5 cut(s) | 137, 346, 439, 562, 595 |
| BmrFI | CCNGG | 2 cut(s) | 49, 50 |
| BmrI | ACTGGG | 1 cut(s) | 364 |
| BmsI | GCATC | 2 cut(s) | 115, 157 |
| BmuI | ACTGGG | 1 cut(s) | 364 |
| BpmI | CTGGAG | 3 cut(s) | 71, 119, 359 |
| Bpu10I | CCTNAGC | 3 cut(s) | 65, 198, 324 |
| BpuMI | CCSGG | 2 cut(s) | 49, 50 |
| BsaHI | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| BsaI | GGTCTC | 2 cut(s) | 89, 523 |
| BsaJI | CCNNGG | 5 cut(s) | 47, 48, 144, 172, 513 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 145, 256, 301, 354, 410 |
| Bse118I | RCCGGY | 1 cut(s) | 161 |
| Bse1I | ACTGG | 1 cut(s) | 359 |
| Bse21I | CCTNAGG | 1 cut(s) | 636 |
| BseDI | CCNNGG | 5 cut(s) | 47, 48, 144, 172, 513 |
| BseGI | GGATG | 2 cut(s) | 130, 562 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 145, 256, 301, 354, 410 |
| BseMII | CTCAG | 7 cut(s) | 79, 212, 315, 417, 500, 521, 627 |
| BseNI | ACTGG | 1 cut(s) | 359 |
| BseRI | GAGGAG | 2 cut(s) | 86, 116 |
| BseSI | GKGCMC | 1 cut(s) | 442 |
| BseXI | GCAGC | 4 cut(s) | 44, 55, 73, 526 |
| Bsh1236I | CGCG | 2 cut(s) | 174, 407 |
| BshNI | GGYRCC | 4 cut(s) | 135, 344, 437, 560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 48 |
| BsiSI | CCGG | 3 cut(s) | 49, 162, 473 |
| BslFI | GGGAC | 1 cut(s) | 352 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 145, 256, 301, 354, 410 |
| BsmAI | GTCTC | 6 cut(s) | 89, 98, 229, 422, 523, 638 |
| BsmFI | GGGAC | 1 cut(s) | 352 |
| Bso31I | GGTCTC | 2 cut(s) | 89, 523 |
| BsoBI | CYCGRG | 1 cut(s) | 48 |
| Bsp1286I | GDGCHC | 2 cut(s) | 442, 581 |
| Bsp143I | GATC | 4 cut(s) | 75, 259, 291, 598 |
| BspCNI | CTCAG | 7 cut(s) | 78, 211, 316, 418, 499, 520, 628 |
| BspFNI | CGCG | 2 cut(s) | 174, 407 |
| BspLI | GGNNCC | 5 cut(s) | 137, 346, 439, 562, 595 |
| BspPI | GGATC | 2 cut(s) | 267, 286 |
| BspT107I | GGYRCC | 4 cut(s) | 135, 344, 437, 560 |
| BspTNI | GGTCTC | 2 cut(s) | 89, 523 |
| BsrBI | CCGCTC | 2 cut(s) | 58, 211 |
| BsrFI | RCCGGY | 1 cut(s) | 161 |
| BsrI | ACTGG | 1 cut(s) | 359 |
| BssAI | RCCGGY | 1 cut(s) | 161 |
| BssECI | CCNNGG | 5 cut(s) | 47, 48, 144, 172, 513 |
| BssMI | GATC | 4 cut(s) | 75, 259, 291, 598 |
| BssNI | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| BssSI | CACGAG | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst2BI | CACGAG | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 2 cut(s) | 116, 630 |
| Bst6I | CTCTTC | 1 cut(s) | 326 |
| BstACI | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| BstC8I | GCNNGC | 4 cut(s) | 172, 179, 396, 529 |
| BstDSI | CCRYGG | 1 cut(s) | 172 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 143, 254 |
| BstF5I | GGATG | 2 cut(s) | 130, 562 |
| BstFNI | CGCG | 2 cut(s) | 174, 407 |
| BstH2I | RGCGCY | 2 cut(s) | 139, 348 |
| BstHHI | GCGC | 3 cut(s) | 138, 347, 409 |
| BstKTI | GATC | 4 cut(s) | 78, 262, 294, 601 |
| BstMAI | GTCTC | 6 cut(s) | 89, 98, 229, 422, 523, 638 |
| BstMBI | GATC | 4 cut(s) | 75, 259, 291, 598 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 320, 404, 496, 656 |
| BstSCI | CCNGG | 2 cut(s) | 47, 48 |
| BstSLI | GKGCMC | 1 cut(s) | 442 |
| BstUI | CGCG | 2 cut(s) | 174, 407 |
| BstV1I | GCAGC | 4 cut(s) | 44, 55, 73, 526 |
| BstX2I | RGATCY | 1 cut(s) | 291 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 557 |
| BstYI | RGATCY | 1 cut(s) | 291 |
| Bsu36I | CCTNAGG | 1 cut(s) | 636 |
| BtgI | CCRYGG | 1 cut(s) | 172 |
| BtrI | CACGTC | 1 cut(s) | 205 |
| BtsCI | GGATG | 2 cut(s) | 130, 562 |
| Cac8I | GCNNGC | 4 cut(s) | 172, 179, 396, 529 |
| CfoI | GCGC | 3 cut(s) | 138, 347, 409 |
| Cfr10I | RCCGGY | 1 cut(s) | 161 |
| Cfr13I | GGNCC | 1 cut(s) | 594 |
| Cfr42I | CCGCGG | 1 cut(s) | 175 |
| Cfr9I | CCCGGG | 1 cut(s) | 48 |
| CseI | GACGC | 3 cut(s) | 167, 354, 458 |
| Csp6I | GTAC | 1 cut(s) | 561 |
| CviAII | CATG | 3 cut(s) | 17, 221, 265 |
| CviQI | GTAC | 1 cut(s) | 561 |
| DinI | GGCGCC | 2 cut(s) | 137, 346 |
| DpnI | GATC | 4 cut(s) | 77, 261, 293, 600 |
| DpnII | GATC | 4 cut(s) | 75, 259, 291, 598 |
| DraIII | CACNNNGTG | 1 cut(s) | 268 |
| DriI | GACNNNNNGTC | 1 cut(s) | 609 |
| Eam1104I | CTCTTC | 1 cut(s) | 326 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 609 |
| EarI | CTCTTC | 1 cut(s) | 326 |
| EciI | GGCGGA | 2 cut(s) | 137, 491 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| Eco24I | GRGCYC | 1 cut(s) | 581 |
| Eco31I | GGTCTC | 2 cut(s) | 89, 523 |
| Eco47I | GGWCC | 1 cut(s) | 594 |
| Eco57I | CTGAAG | 1 cut(s) | 275 |
| Eco81I | CCTNAGG | 1 cut(s) | 636 |
| Eco88I | CYCGRG | 1 cut(s) | 48 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 143, 254 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| EcoT38I | GRGCYC | 1 cut(s) | 581 |
| EgeI | GGCGCC | 2 cut(s) | 137, 346 |
| EheI | GGCGCC | 2 cut(s) | 137, 346 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| FaeI | CATG | 3 cut(s) | 20, 224, 268 |
| FaiI | YATR | 5 cut(s) | 18, 222, 245, 266, 546 |
| FaqI | GGGAC | 1 cut(s) | 352 |
| FatI | CATG | 3 cut(s) | 16, 220, 264 |
| FauI | CCCGC | 3 cut(s) | 179, 412, 504 |
| Fnu4HI | GCNGC | 8 cut(s) | 33, 44, 59, 62, 175, 312, 540, 651 |
| FokI | GGATG | 2 cut(s) | 137, 569 |
| FriOI | GRGCYC | 1 cut(s) | 581 |
| Fsp4HI | GCNGC | 8 cut(s) | 33, 44, 59, 62, 175, 312, 540, 651 |
| GlaI | GCGC | 3 cut(s) | 137, 346, 408 |
| GluI | GCNGC | 8 cut(s) | 33, 44, 59, 62, 175, 312, 540, 651 |
| GsuI | CTGGAG | 3 cut(s) | 71, 119, 359 |
| HaeII | RGCGCY | 2 cut(s) | 139, 348 |
| HapII | CCGG | 3 cut(s) | 49, 162, 473 |
| HgaI | GACGC | 3 cut(s) | 167, 354, 458 |
| HhaI | GCGC | 3 cut(s) | 138, 347, 409 |
| Hin1I | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| Hin1II | CATG | 3 cut(s) | 20, 224, 268 |
| Hin6I | GCGC | 3 cut(s) | 136, 345, 407 |
| HinP1I | GCGC | 3 cut(s) | 136, 345, 407 |
| HinfI | GANTC | 4 cut(s) | 305, 334, 482, 607 |
| HpaII | CCGG | 3 cut(s) | 49, 162, 473 |
| HphI | GGTGA | 3 cut(s) | 176, 340, 653 |
| Hpy188I | TCNGA | 5 cut(s) | 427, 514, 598, 603, 615 |
| Hpy188III | TCNNGA | 3 cut(s) | 88, 200, 338 |
| Hpy99I | CGWCG | 1 cut(s) | 634 |
| HpyAV | CCTTC | 2 cut(s) | 250, 305 |
| HpyCH4III | ACNGT | 2 cut(s) | 116, 630 |
| HpyCH4IV | ACGT | 1 cut(s) | 204 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 320, 404, 496, 656 |
| HpySE526I | ACGT | 1 cut(s) | 204 |
| Hsp92I | GRCGYC | 4 cut(s) | 136, 159, 345, 365 |
| Hsp92II | CATG | 3 cut(s) | 20, 224, 268 |
| HspAI | GCGC | 3 cut(s) | 136, 345, 407 |
| KasI | GGCGCC | 2 cut(s) | 135, 344 |
| KpnI | GGTACC | 1 cut(s) | 564 |
| KspI | CCGCGG | 1 cut(s) | 175 |
| Kzo9I | GATC | 4 cut(s) | 75, 259, 291, 598 |
| LmnI | GCTCC | 4 cut(s) | 55, 94, 208, 619 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 55, 73, 526 |
| LweI | GCATC | 2 cut(s) | 115, 157 |
| MaeII | ACGT | 1 cut(s) | 204 |
| MaeIII | GTNAC | 2 cut(s) | 155, 568 |
| MalI | GATC | 4 cut(s) | 77, 261, 293, 600 |
| MbiI | CCGCTC | 2 cut(s) | 58, 211 |
| MboI | GATC | 4 cut(s) | 75, 259, 291, 598 |
| MboII | GAAGA | 2 cut(s) | 292, 343 |
| MflI | RGATCY | 1 cut(s) | 291 |
| MhlI | GDGCHC | 2 cut(s) | 442, 581 |
| Mly113I | GGCGCC | 2 cut(s) | 136, 345 |
| MlyI | GAGTC | 2 cut(s) | 343, 616 |
| MseI | TTAA | 1 cut(s) | 288 |
| MspA1I | CMGCKG | 1 cut(s) | 174 |
| MspI | CCGG | 3 cut(s) | 49, 162, 473 |
| MspR9I | CCNGG | 2 cut(s) | 49, 50 |
| MvnI | CGCG | 2 cut(s) | 174, 407 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 320, 404, 496, 656 |
| NarI | GGCGCC | 2 cut(s) | 136, 345 |
| NciI | CCSGG | 2 cut(s) | 49, 50 |
| NdeII | GATC | 4 cut(s) | 75, 259, 291, 598 |
| NlaIII | CATG | 3 cut(s) | 20, 224, 268 |
| NlaIV | GGNNCC | 5 cut(s) | 137, 346, 439, 562, 595 |
| NmuCI | GTSAC | 1 cut(s) | 155 |
| PfeI | GAWTC | 2 cut(s) | 305, 482 |
| PflFI | GACNNNGTC | 2 cut(s) | 221, 356 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 354 |
| PkrI | GCNGC | 8 cut(s) | 34, 45, 60, 63, 176, 313, 541, 652 |
| PleI | GAGTC | 2 cut(s) | 342, 615 |
| PluTI | GGCGCC | 2 cut(s) | 139, 348 |
| PpsI | GAGTC | 2 cut(s) | 342, 615 |
| PspN4I | GGNNCC | 5 cut(s) | 137, 346, 439, 562, 595 |
| PspPI | GGNCC | 1 cut(s) | 594 |
| PsuI | RGATCY | 1 cut(s) | 291 |
| PsyI | GACNNNGTC | 2 cut(s) | 221, 356 |
| RsaI | GTAC | 1 cut(s) | 562 |
| RsaNI | GTAC | 1 cut(s) | 561 |
| SacII | CCGCGG | 1 cut(s) | 175 |
| SaqAI | TTAA | 1 cut(s) | 288 |
| SatI | GCNGC | 8 cut(s) | 33, 44, 59, 62, 175, 312, 540, 651 |
| Sau3AI | GATC | 4 cut(s) | 75, 259, 291, 598 |
| Sau96I | GGNCC | 1 cut(s) | 594 |
| SchI | GAGTC | 2 cut(s) | 343, 616 |
| ScrFI | CCNGG | 2 cut(s) | 49, 50 |
| SduI | GDGCHC | 2 cut(s) | 442, 581 |
| SetI | ASST | 9 cut(s) | 66, 99, 183, 207, 330, 403, 415, 451, 519 |
| SfaNI | GCATC | 2 cut(s) | 115, 157 |
| SfoI | GGCGCC | 2 cut(s) | 137, 346 |
| Sfr303I | CCGCGG | 1 cut(s) | 175 |
| SgrAI | CRCCGGYG | 1 cut(s) | 161 |
| SgrBI | CCGCGG | 1 cut(s) | 175 |
| SinI | GGWCC | 1 cut(s) | 594 |
| SmaI | CCCGGG | 1 cut(s) | 50 |
| SspDI | GGCGCC | 2 cut(s) | 135, 344 |
| StyD4I | CCNGG | 2 cut(s) | 47, 48 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 2 cut(s) | 116, 630 |
| TaiI | ACGT | 1 cut(s) | 207 |
| TaqI | TCGA | 2 cut(s) | 38, 78 |
| TauI | GCSGC | 4 cut(s) | 61, 177, 314, 653 |
| TfiI | GAWTC | 2 cut(s) | 305, 482 |
| Tru1I | TTAA | 1 cut(s) | 288 |
| Tru9I | TTAA | 1 cut(s) | 288 |
| TseFI | GTSAC | 1 cut(s) | 155 |
| TseI | GCWGC | 4 cut(s) | 32, 43, 61, 539 |
| Tsp45I | GTSAC | 1 cut(s) | 155 |
| TspGWI | ACGGA | 1 cut(s) | 632 |
| TspMI | CCCGGG | 1 cut(s) | 48 |
| Tth111I | GACNNNGTC | 2 cut(s) | 221, 356 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 354 |
| VpaK11BI | GGWCC | 1 cut(s) | 594 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 143, 254 |
| XmaI | CCCGGG | 1 cut(s) | 48 |