Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 344 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1423 |
| Acc36I | ACCTGC | 1 cut(s) | 344 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 523 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| AccBSI | CCGCTC | 5 cut(s) | 1279, 1597, 1624, 1837, 1966 |
| AccI | GTMKAC | 3 cut(s) | 345, 888, 994 |
| AclWI | GGATC | 3 cut(s) | 532, 933, 1248 |
| AcoI | YGGCCR | 5 cut(s) | 603, 1230, 1260, 1845, 1893 |
| AcsI | RAATTY | 1 cut(s) | 551 |
| AcuI | CTGAAG | 1 cut(s) | 1669 |
| AcyI | GRCGYC | 2 cut(s) | 1739, 1872 |
| AflIII | ACRYGT | 2 cut(s) | 48, 1924 |
| AgeI | ACCGGT | 1 cut(s) | 975 |
| AgsI | TTSAA | 5 cut(s) | 391, 703, 1034, 1319, 1760 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 3 cut(s) | 519, 540, 805 |
| AleI | CACNNNNGTG | 1 cut(s) | 1296 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1586, 1618 |
| AluBI | AGCT | 8 cut(s) | 198, 244, 424, 745, 1552, 1689, 1768, 1885 |
| AluI | AGCT | 8 cut(s) | 198, 244, 424, 745, 1552, 1689, 1768, 1885 |
| Alw21I | GWGCWC | 4 cut(s) | 200, 246, 486, 1770 |
| Alw26I | GTCTC | 6 cut(s) | 1118, 1185, 1431, 1499, 1793, 1933 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 3 cut(s) | 532, 933, 1248 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 541 |
| ApaI | GGGCCC | 1 cut(s) | 1471 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 1 cut(s) | 551 |
| AsiGI | ACCGGT | 1 cut(s) | 975 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AsuC2I | CCSGG | 6 cut(s) | 40, 411, 631, 1049, 1264, 1753 |
| AsuHPI | GGTGA | 5 cut(s) | 221, 430, 790, 1126, 1202 |
| AvaII | GGWCC | 5 cut(s) | 786, 1045, 1221, 1301, 1374 |
| BaeGI | GKGCMC | 3 cut(s) | 486, 528, 1471 |
| BalI | TGGCCA | 2 cut(s) | 605, 1847 |
| BanI | GGYRCC | 2 cut(s) | 335, 523 |
| BanII | GRGCYC | 4 cut(s) | 200, 246, 1471, 1770 |
| BauI | CACGAG | 2 cut(s) | 177, 485 |
| Bbv12I | GWGCWC | 4 cut(s) | 200, 246, 486, 1770 |
| BccI | CCATC | 5 cut(s) | 161, 326, 1190, 1620, 1904 |
| BceAI | ACGGC | 9 cut(s) | 326, 362, 453, 810, 1245, 1434, 1458, 1526, 1680 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 3 cut(s) | 521, 542, 807 |
| BcnI | CCSGG | 6 cut(s) | 40, 411, 631, 1049, 1264, 1753 |
| BcoDI | GTCTC | 6 cut(s) | 1118, 1185, 1431, 1499, 1793, 1933 |
| BfaI | CTAG | 5 cut(s) | 131, 201, 267, 957, 1553 |
| BfmI | CTRYAG | 2 cut(s) | 146, 1958 |
| BfoI | RGCGCY | 6 cut(s) | 694, 740, 1136, 1257, 1400, 1414 |
| BfuAI | ACCTGC | 1 cut(s) | 344 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1493 |
| BlpI | GCTNAGC | 1 cut(s) | 1136 |
| Bme1390I | CCNGG | 9 cut(s) | 40, 411, 521, 542, 631, 807, 1049, 1264, 1753 |
| Bme18I | GGWCC | 5 cut(s) | 786, 1045, 1221, 1301, 1374 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmrFI | CCNGG | 9 cut(s) | 40, 411, 521, 542, 631, 807, 1049, 1264, 1753 |
| BmsI | GCATC | 4 cut(s) | 1152, 1158, 1272, 1522 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 1541, 1573 |
| BpmI | CTGGAG | 3 cut(s) | 518, 1421, 1775 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1769 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1136 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| BpuMI | CCSGG | 6 cut(s) | 40, 411, 631, 1049, 1264, 1753 |
| BsaHI | GRCGYC | 2 cut(s) | 1739, 1872 |
| BsaI | GGTCTC | 1 cut(s) | 1793 |
| BsaWI | WCCGGW | 2 cut(s) | 975, 1153 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1064, 1094, 1437, 1467, 1586, 1616 |
| Bse118I | RCCGGY | 4 cut(s) | 726, 975, 1232, 1321 |
| Bse1I | ACTGG | 5 cut(s) | 782, 1141, 1177, 1358, 1827 |
| BseBI | CCWGG | 3 cut(s) | 521, 542, 807 |
| BseGI | GGATG | 6 cut(s) | 153, 369, 448, 1201, 1287, 1371 |
| BseMII | CTCAG | 6 cut(s) | 342, 836, 1113, 1319, 1413, 1783 |
| BseNI | ACTGG | 5 cut(s) | 782, 1141, 1177, 1358, 1827 |
| BseSI | GKGCMC | 3 cut(s) | 486, 528, 1471 |
| BseX3I | CGGCCG | 2 cut(s) | 1230, 1260 |
| BseYI | CCCAGC | 5 cut(s) | 278, 463, 1101, 1382, 1627 |
| BsgI | GTGCAG | 1 cut(s) | 1232 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1233, 1263 |
| BshNI | GGYRCC | 2 cut(s) | 335, 523 |
| BshTI | ACCGGT | 1 cut(s) | 975 |
| BsiEI | CGRYCG | 2 cut(s) | 1233, 1263 |
| BsiHKAI | GWGCWC | 4 cut(s) | 200, 246, 486, 1770 |
| BslFI | GGGAC | 6 cut(s) | 776, 799, 892, 1234, 1728, 1919 |
| BsmAI | GTCTC | 6 cut(s) | 1118, 1185, 1431, 1499, 1793, 1933 |
| BsmBI | CGTCTC | 2 cut(s) | 1118, 1933 |
| BsmFI | GGGAC | 6 cut(s) | 776, 799, 892, 1234, 1728, 1919 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| Bso31I | GGTCTC | 1 cut(s) | 1793 |
| Bsp120I | GGGCCC | 1 cut(s) | 1467 |
| Bsp1286I | GDGCHC | 6 cut(s) | 200, 246, 486, 528, 1471, 1770 |
| Bsp143I | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1136 |
| Bsp19I | CCATGG | 1 cut(s) | 1041 |
| Bsp68I | TCGCGA | 1 cut(s) | 1023 |
| BspCNI | CTCAG | 6 cut(s) | 341, 837, 1114, 1318, 1414, 1782 |
| BspMAI | CTGCAG | 1 cut(s) | 1962 |
| BspMI | ACCTGC | 1 cut(s) | 344 |
| BspPI | GGATC | 3 cut(s) | 532, 933, 1248 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 523 |
| BspTNI | GGTCTC | 1 cut(s) | 1793 |
| BsrBI | CCGCTC | 5 cut(s) | 1279, 1597, 1624, 1837, 1966 |
| BsrFI | RCCGGY | 4 cut(s) | 726, 975, 1232, 1321 |
| BsrI | ACTGG | 5 cut(s) | 782, 1141, 1177, 1358, 1827 |
| BssAI | RCCGGY | 4 cut(s) | 726, 975, 1232, 1321 |
| BssMI | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| BssNAI | GTATAC | 1 cut(s) | 889 |
| BssNI | GRCGYC | 2 cut(s) | 1739, 1872 |
| BssSI | CACGAG | 2 cut(s) | 177, 485 |
| BssT1I | CCWWGG | 4 cut(s) | 225, 502, 1041, 1848 |
| Bst1107I | GTATAC | 1 cut(s) | 889 |
| Bst2BI | CACGAG | 2 cut(s) | 177, 485 |
| Bst2UI | CCWGG | 3 cut(s) | 521, 542, 807 |
| Bst4CI | ACNGT | 4 cut(s) | 649, 1111, 1210, 1578 |
| Bst6I | CTCTTC | 4 cut(s) | 279, 901, 1434, 1613 |
| BstACI | GRCGYC | 2 cut(s) | 1739, 1872 |
| BstDEI | CTNAG | 8 cut(s) | 328, 758, 845, 1122, 1136, 1305, 1422, 1769 |
| BstDSI | CCRYGG | 4 cut(s) | 874, 1041, 1257, 1876 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 860 |
| BstF5I | GGATG | 6 cut(s) | 153, 369, 448, 1201, 1287, 1371 |
| BstH2I | RGCGCY | 6 cut(s) | 694, 740, 1136, 1257, 1400, 1414 |
| BstKTI | GATC | 5 cut(s) | 540, 750, 928, 1243, 1950 |
| BstMAI | GTCTC | 6 cut(s) | 1118, 1185, 1431, 1499, 1793, 1933 |
| BstMBI | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| BstMCI | CGRYCG | 2 cut(s) | 1233, 1263 |
| BstNI | CCWGG | 3 cut(s) | 521, 542, 807 |
| BstSCI | CCNGG | 9 cut(s) | 38, 409, 519, 540, 629, 805, 1047, 1262, 1751 |
| BstSFI | CTRYAG | 2 cut(s) | 146, 1958 |
| BstSLI | GKGCMC | 3 cut(s) | 486, 528, 1471 |
| BstX2I | RGATCY | 1 cut(s) | 537 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1298 |
| BstYI | RGATCY | 1 cut(s) | 537 |
| BstZ17I | GTATAC | 1 cut(s) | 889 |
| BstZI | CGGCCG | 2 cut(s) | 1230, 1260 |
| BtgI | CCRYGG | 4 cut(s) | 874, 1041, 1257, 1876 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 6 cut(s) | 153, 369, 448, 1201, 1287, 1371 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1952 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 1215, 1365, 1952 |
| BtuMI | TCGCGA | 1 cut(s) | 1023 |
| BveI | ACCTGC | 1 cut(s) | 344 |
| CaiI | CAGNNNCTG | 1 cut(s) | 541 |
| Cfr10I | RCCGGY | 4 cut(s) | 726, 975, 1232, 1321 |
| Cfr42I | CCGCGG | 3 cut(s) | 877, 1260, 1879 |
| CseI | GACGC | 9 cut(s) | 80, 176, 784, 905, 1034, 1442, 1728, 1880, 1915 |
| CspAI | ACCGGT | 1 cut(s) | 975 |
| CviAII | CATG | 5 cut(s) | 104, 607, 769, 1042, 1078 |
| DdeI | CTNAG | 8 cut(s) | 328, 758, 845, 1122, 1136, 1305, 1422, 1769 |
| DpnI | GATC | 5 cut(s) | 539, 749, 927, 1242, 1949 |
| DpnII | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1423 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1423 |
| EaeI | YGGCCR | 5 cut(s) | 603, 1230, 1260, 1845, 1893 |
| EagI | CGGCCG | 2 cut(s) | 1230, 1260 |
| Eam1104I | CTCTTC | 4 cut(s) | 279, 901, 1434, 1613 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 4 cut(s) | 279, 901, 1434, 1613 |
| Ecl136II | GAGCTC | 3 cut(s) | 198, 244, 1768 |
| EclXI | CGGCCG | 2 cut(s) | 1230, 1260 |
| Eco130I | CCWWGG | 4 cut(s) | 225, 502, 1041, 1848 |
| Eco147I | AGGCCT | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 4 cut(s) | 200, 246, 1471, 1770 |
| Eco31I | GGTCTC | 1 cut(s) | 1793 |
| Eco47I | GGWCC | 5 cut(s) | 786, 1045, 1221, 1301, 1374 |
| Eco52I | CGGCCG | 2 cut(s) | 1230, 1260 |
| Eco53kI | GAGCTC | 3 cut(s) | 198, 244, 1768 |
| Eco57I | CTGAAG | 1 cut(s) | 1669 |
| EcoICRI | GAGCTC | 3 cut(s) | 198, 244, 1768 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 860 |
| EcoO109I | RGGNCCY | 4 cut(s) | 641, 786, 1221, 1467 |
| EcoRII | CCWGG | 3 cut(s) | 519, 540, 805 |
| EcoT14I | CCWWGG | 4 cut(s) | 225, 502, 1041, 1848 |
| EcoT38I | GRGCYC | 4 cut(s) | 200, 246, 1471, 1770 |
| ErhI | CCWWGG | 4 cut(s) | 225, 502, 1041, 1848 |
| Esp3I | CGTCTC | 2 cut(s) | 1118, 1933 |
| FaeI | CATG | 5 cut(s) | 107, 610, 772, 1045, 1081 |
| FaqI | GGGAC | 6 cut(s) | 776, 799, 892, 1234, 1728, 1919 |
| FatI | CATG | 5 cut(s) | 103, 606, 768, 1041, 1077 |
| FblI | GTMKAC | 3 cut(s) | 345, 888, 994 |
| FokI | GGATG | 6 cut(s) | 140, 376, 455, 1208, 1294, 1378 |
| FriOI | GRGCYC | 4 cut(s) | 200, 246, 1471, 1770 |
| FspBI | CTAG | 5 cut(s) | 131, 201, 267, 957, 1553 |
| GsaI | CCCAGC | 5 cut(s) | 282, 467, 1105, 1386, 1631 |
| GsuI | CTGGAG | 3 cut(s) | 518, 1421, 1775 |
| HaeII | RGCGCY | 6 cut(s) | 694, 740, 1136, 1257, 1400, 1414 |
| HgaI | GACGC | 9 cut(s) | 80, 176, 784, 905, 1034, 1442, 1728, 1880, 1915 |
| Hin1I | GRCGYC | 2 cut(s) | 1739, 1872 |
| Hin1II | CATG | 5 cut(s) | 107, 610, 772, 1045, 1081 |
| HincII | GTYRAC | 3 cut(s) | 346, 382, 995 |
| HindII | GTYRAC | 3 cut(s) | 346, 382, 995 |
| HindIII | AAGCTT | 1 cut(s) | 1883 |
| HinfI | GANTC | 9 cut(s) | 35, 83, 311, 721, 754, 764, 1424, 1556, 2010 |
| HphI | GGTGA | 5 cut(s) | 221, 430, 790, 1126, 1202 |
| Hpy166II | GTNNAC | 7 cut(s) | 346, 382, 484, 715, 889, 995, 1117 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 535, 751, 1022, 1430, 1792 |
| Hpy8I | GTNNAC | 7 cut(s) | 346, 382, 484, 715, 889, 995, 1117 |
| Hpy99I | CGWCG | 7 cut(s) | 242, 347, 350, 439, 1028, 1666, 1744 |
| HpyAV | CCTTC | 9 cut(s) | 442, 799, 814, 1267, 1303, 1477, 1583, 1693, 1754 |
| HpyCH4III | ACNGT | 4 cut(s) | 649, 1111, 1210, 1578 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 48, 398, 512, 1127 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 484, 1213, 1574, 1960, 2003 |
| HpyF3I | CTNAG | 8 cut(s) | 328, 758, 845, 1122, 1136, 1305, 1422, 1769 |
| HpySE526I | ACGT | 5 cut(s) | 9, 48, 398, 512, 1127 |
| Hsp92I | GRCGYC | 2 cut(s) | 1739, 1872 |
| Hsp92II | CATG | 5 cut(s) | 107, 610, 772, 1045, 1081 |
| KflI | GGGWCCC | 1 cut(s) | 1221 |
| KroI | GCCGGC | 1 cut(s) | 726 |
| KroNI | GCCGGC | 1 cut(s) | 728 |
| KspI | CCGCGG | 3 cut(s) | 877, 1260, 1879 |
| Kzo9I | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| LmnI | GCTCC | 7 cut(s) | 278, 734, 1017, 1276, 1594, 1939, 1963 |
| LweI | GCATC | 4 cut(s) | 1152, 1158, 1272, 1522 |
| MaeI | CTAG | 5 cut(s) | 131, 201, 267, 957, 1553 |
| MaeII | ACGT | 5 cut(s) | 9, 48, 398, 512, 1127 |
| MaeIII | GTNAC | 5 cut(s) | 166, 796, 1266, 1339, 1859 |
| MalI | GATC | 5 cut(s) | 539, 749, 927, 1242, 1949 |
| MbiI | CCGCTC | 5 cut(s) | 1279, 1597, 1624, 1837, 1966 |
| MboI | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| MboII | GAAGA | 9 cut(s) | 296, 829, 915, 918, 1340, 1451, 1492, 1600, 1787 |
| MfeI | CAATTG | 1 cut(s) | 1668 |
| MflI | RGATCY | 1 cut(s) | 537 |
| MhlI | GDGCHC | 6 cut(s) | 200, 246, 486, 528, 1471, 1770 |
| MlsI | TGGCCA | 2 cut(s) | 605, 1847 |
| MluCI | AATT | 4 cut(s) | 456, 551, 1063, 1668 |
| MluI | ACGCGT | 1 cut(s) | 1924 |
| MluNI | TGGCCA | 2 cut(s) | 605, 1847 |
| MlyI | GAGTC | 5 cut(s) | 730, 758, 1433, 1550, 2019 |
| MmeI | TCCRAC | 3 cut(s) | 427, 876, 1917 |
| Mox20I | TGGCCA | 2 cut(s) | 605, 1847 |
| MroNI | GCCGGC | 1 cut(s) | 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MscI | TGGCCA | 2 cut(s) | 605, 1847 |
| MseI | TTAA | 3 cut(s) | 839, 1005, 1887 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1188, 1296, 1998 |
| Msp20I | TGGCCA | 2 cut(s) | 605, 1847 |
| MspA1I | CMGCKG | 9 cut(s) | 218, 278, 374, 467, 876, 1259, 1382, 1878, 2006 |
| MspR9I | CCNGG | 9 cut(s) | 40, 411, 521, 542, 631, 807, 1049, 1264, 1753 |
| MunI | CAATTG | 1 cut(s) | 1668 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| MvaI | CCWGG | 3 cut(s) | 521, 542, 807 |
| NaeI | GCCGGC | 1 cut(s) | 728 |
| NciI | CCSGG | 6 cut(s) | 40, 411, 631, 1049, 1264, 1753 |
| NcoI | CCATGG | 1 cut(s) | 1041 |
| NdeII | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| NgoMIV | GCCGGC | 1 cut(s) | 726 |
| NlaIII | CATG | 5 cut(s) | 107, 610, 772, 1045, 1081 |
| NmeAIII | GCCGAG | 4 cut(s) | 719, 1111, 1591, 1670 |
| NmuCI | GTSAC | 4 cut(s) | 796, 1266, 1339, 1859 |
| NruI | TCGCGA | 1 cut(s) | 1023 |
| OliI | CACNNNNGTG | 1 cut(s) | 1296 |
| PaqCI | CACCTGC | 1 cut(s) | 344 |
| PceI | AGGCCT | 1 cut(s) | 452 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 184 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PdiI | GCCGGC | 1 cut(s) | 728 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 4 cut(s) | 35, 83, 311, 754 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| PinAI | ACCGGT | 1 cut(s) | 975 |
| PleI | GAGTC | 5 cut(s) | 729, 758, 1432, 1550, 2018 |
| PpsI | GAGTC | 5 cut(s) | 729, 758, 1432, 1550, 2018 |
| PpuMI | RGGWCCY | 2 cut(s) | 786, 1221 |
| Psp124BI | GAGCTC | 3 cut(s) | 200, 246, 1770 |
| Psp5II | RGGWCCY | 2 cut(s) | 786, 1221 |
| Psp6I | CCWGG | 3 cut(s) | 519, 540, 805 |
| PspFI | CCCAGC | 5 cut(s) | 278, 463, 1101, 1382, 1627 |
| PspGI | CCWGG | 3 cut(s) | 519, 540, 805 |
| PspOMI | GGGCCC | 1 cut(s) | 1467 |
| PspPPI | RGGWCCY | 2 cut(s) | 786, 1221 |
| PstI | CTGCAG | 1 cut(s) | 1962 |
| PstNI | CAGNNNCTG | 1 cut(s) | 541 |
| PsuI | RGATCY | 1 cut(s) | 537 |
| RruI | TCGCGA | 1 cut(s) | 1023 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1188, 1296, 1998 |
| SacI | GAGCTC | 3 cut(s) | 200, 246, 1770 |
| SacII | CCGCGG | 3 cut(s) | 877, 1260, 1879 |
| SalI | GTCGAC | 2 cut(s) | 344, 993 |
| SaqAI | TTAA | 3 cut(s) | 839, 1005, 1887 |
| Sau3AI | GATC | 5 cut(s) | 537, 747, 925, 1240, 1947 |
| SchI | GAGTC | 5 cut(s) | 730, 758, 1433, 1550, 2019 |
| ScrFI | CCNGG | 9 cut(s) | 40, 411, 521, 542, 631, 807, 1049, 1264, 1753 |
| SduI | GDGCHC | 6 cut(s) | 200, 246, 486, 528, 1471, 1770 |
| SfaNI | GCATC | 4 cut(s) | 1152, 1158, 1272, 1522 |
| SfcI | CTRYAG | 2 cut(s) | 146, 1958 |
| Sfr303I | CCGCGG | 3 cut(s) | 877, 1260, 1879 |
| SgrBI | CCGCGG | 3 cut(s) | 877, 1260, 1879 |
| SgrDI | CGTCGACG | 1 cut(s) | 344 |
| SinI | GGWCC | 5 cut(s) | 786, 1045, 1221, 1301, 1374 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1188, 1296, 1998 |
| SmlI | CTYRAG | 1 cut(s) | 718 |
| SmoI | CTYRAG | 1 cut(s) | 718 |
| Sse9I | AATT | 4 cut(s) | 456, 551, 1063, 1668 |
| SseBI | AGGCCT | 1 cut(s) | 452 |
| SspMI | CTAG | 5 cut(s) | 131, 201, 267, 957, 1553 |
| SstI | GAGCTC | 3 cut(s) | 200, 246, 1770 |
| StuI | AGGCCT | 1 cut(s) | 452 |
| StyD4I | CCNGG | 9 cut(s) | 38, 409, 519, 540, 629, 805, 1047, 1262, 1751 |
| StyI | CCWWGG | 4 cut(s) | 225, 502, 1041, 1848 |
| TaaI | ACNGT | 4 cut(s) | 649, 1111, 1210, 1578 |
| TaiI | ACGT | 5 cut(s) | 12, 51, 401, 515, 1130 |
| TaqI | TCGA | 8 cut(s) | 23, 345, 750, 811, 861, 965, 994, 1742 |
| TasI | AATT | 4 cut(s) | 456, 551, 1063, 1668 |
| TfiI | GAWTC | 4 cut(s) | 35, 83, 311, 754 |
| Tru1I | TTAA | 3 cut(s) | 839, 1005, 1887 |
| Tru9I | TTAA | 3 cut(s) | 839, 1005, 1887 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 1215, 1365, 1959 |
| TseFI | GTSAC | 4 cut(s) | 796, 1266, 1339, 1859 |
| Tsp45I | GTSAC | 4 cut(s) | 796, 1266, 1339, 1859 |
| TspDTI | ATGAA | 2 cut(s) | 623, 830 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 1215, 1365, 1959 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 5 cut(s) | 786, 1045, 1221, 1301, 1374 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 860 |
| XapI | RAATTY | 1 cut(s) | 551 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1184, 1232 |
| XmiI | GTMKAC | 3 cut(s) | 345, 888, 994 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 5 cut(s) | 131, 201, 267, 957, 1553 |