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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 449 |
| AccB1I | GGYRCC | 3 cut(s) | 69, 425, 518 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 435 |
| AccBSI | CCGCTC | 2 cut(s) | 67, 133 |
| AclWI | GGATC | 1 cut(s) | 220 |
| AcoI | YGGCCR | 3 cut(s) | 201, 255, 318 |
| AcuI | CTGAAG | 2 cut(s) | 215, 434 |
| AcyI | GRCGYC | 3 cut(s) | 70, 426, 446 |
| AfaI | GTAC | 1 cut(s) | 496 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 48, 79, 132, 235, 435, 491, 508, 595 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AjnI | CCWGG | 2 cut(s) | 42, 291 |
| AluBI | AGCT | 4 cut(s) | 31, 166, 299, 470 |
| AluI | AGCT | 4 cut(s) | 31, 166, 299, 470 |
| Alw26I | GTCTC | 2 cut(s) | 163, 186 |
| AlwI | GGATC | 1 cut(s) | 220 |
| Ama87I | CYCGRG | 1 cut(s) | 526 |
| AoxI | GGCC | 4 cut(s) | 39, 201, 255, 318 |
| ApeKI | GCWGC | 3 cut(s) | 95, 187, 314 |
| AspLEI | GCGC | 4 cut(s) | 72, 367, 428, 548 |
| AspS9I | GGNCC | 2 cut(s) | 40, 136 |
| AsuC2I | CCSGG | 2 cut(s) | 486, 554 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 290 |
| AvaI | CYCGRG | 1 cut(s) | 526 |
| AvaII | GGWCC | 1 cut(s) | 136 |
| BanI | GGYRCC | 3 cut(s) | 69, 425, 518 |
| BbsI | GAAGAC | 1 cut(s) | 449 |
| BbvCI | CCTCAGC | 1 cut(s) | 300 |
| BbvI | GCAGC | 3 cut(s) | 107, 174, 301 |
| BciT130I | CCWGG | 2 cut(s) | 44, 293 |
| BcnI | CCSGG | 2 cut(s) | 486, 554 |
| BcoDI | GTCTC | 2 cut(s) | 163, 186 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfoI | RGCGCY | 3 cut(s) | 73, 368, 429 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 254 |
| BglII | AGATCT | 1 cut(s) | 193 |
| Bme1390I | CCNGG | 4 cut(s) | 44, 293, 486, 554 |
| Bme18I | GGWCC | 1 cut(s) | 136 |
| BmeT110I | CYCGRG | 1 cut(s) | 526 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 136 |
| BmiI | GGNNCC | 5 cut(s) | 71, 137, 391, 427, 520 |
| BmrFI | CCNGG | 4 cut(s) | 44, 293, 486, 554 |
| BmrI | ACTGGG | 1 cut(s) | 583 |
| BmsI | GCATC | 4 cut(s) | 82, 91, 399, 466 |
| BmuI | ACTGGG | 1 cut(s) | 583 |
| BpiI | GAAGAC | 1 cut(s) | 449 |
| BpmI | CTGGAG | 1 cut(s) | 188 |
| Bpu10I | CCTNAGC | 3 cut(s) | 207, 300, 471 |
| BpuMI | CCSGG | 2 cut(s) | 486, 554 |
| BsaHI | GRCGYC | 3 cut(s) | 70, 426, 446 |
| BsaJI | CCNNGG | 6 cut(s) | 42, 78, 106, 258, 292, 611 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 48, 79, 132, 235, 435, 491, 508, 595 |
| Bse1I | ACTGG | 2 cut(s) | 258, 589 |
| BseBI | CCWGG | 2 cut(s) | 44, 293 |
| BseDI | CCNNGG | 6 cut(s) | 42, 78, 106, 258, 292, 611 |
| BseGI | GGATG | 3 cut(s) | 64, 106, 481 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 48, 79, 132, 235, 435, 491, 508, 595 |
| BseMII | CTCAG | 3 cut(s) | 291, 363, 521 |
| BseNI | ACTGG | 2 cut(s) | 258, 589 |
| BseRI | GAGGAG | 3 cut(s) | 20, 471, 567 |
| BseX3I | CGGCCG | 1 cut(s) | 318 |
| BseXI | GCAGC | 3 cut(s) | 107, 174, 301 |
| BseYI | CCCAGC | 2 cut(s) | 31, 567 |
| Bsh1285I | CGRYCG | 1 cut(s) | 321 |
| BshFI | GGCC | 4 cut(s) | 41, 203, 257, 320 |
| BshNI | GGYRCC | 3 cut(s) | 69, 425, 518 |
| BsiEI | CGRYCG | 1 cut(s) | 321 |
| BsiHKCI | CYCGRG | 1 cut(s) | 526 |
| BsiSI | CCGG | 2 cut(s) | 485, 554 |
| BslFI | GGGAC | 2 cut(s) | 149, 586 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 48, 79, 132, 235, 435, 491, 508, 595 |
| BsmAI | GTCTC | 2 cut(s) | 163, 186 |
| BsmFI | GGGAC | 2 cut(s) | 149, 586 |
| BsmI | GAATGC | 1 cut(s) | 335 |
| BsnI | GGCC | 4 cut(s) | 41, 203, 257, 320 |
| BsoBI | CYCGRG | 1 cut(s) | 526 |
| Bsp143I | GATC | 2 cut(s) | 193, 225 |
| BspANI | GGCC | 4 cut(s) | 41, 203, 257, 320 |
| BspCNI | CTCAG | 3 cut(s) | 292, 364, 520 |
| BspLI | GGNNCC | 5 cut(s) | 71, 137, 391, 427, 520 |
| BspMAI | CTGCAG | 1 cut(s) | 24 |
| BspPI | GGATC | 1 cut(s) | 220 |
| BspT107I | GGYRCC | 3 cut(s) | 69, 425, 518 |
| BsrBI | CCGCTC | 2 cut(s) | 67, 133 |
| BsrI | ACTGG | 2 cut(s) | 258, 589 |
| BssECI | CCNNGG | 6 cut(s) | 42, 78, 106, 258, 292, 611 |
| BssMI | GATC | 2 cut(s) | 193, 225 |
| BssNI | GRCGYC | 3 cut(s) | 70, 426, 446 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst2UI | CCWGG | 2 cut(s) | 44, 293 |
| Bst4CI | ACNGT | 4 cut(s) | 89, 121, 518, 608 |
| BstACI | GRCGYC | 3 cut(s) | 70, 426, 446 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 4 cut(s) | 54, 289, 468, 523 |
| BstDEI | CTNAG | 5 cut(s) | 207, 300, 372, 471, 507 |
| BstDSI | CCRYGG | 1 cut(s) | 106 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 3 cut(s) | 64, 106, 481 |
| BstH2I | RGCGCY | 3 cut(s) | 73, 368, 429 |
| BstHHI | GCGC | 4 cut(s) | 72, 367, 428, 548 |
| BstKTI | GATC | 2 cut(s) | 196, 228 |
| BstMAI | GTCTC | 2 cut(s) | 163, 186 |
| BstMBI | GATC | 2 cut(s) | 193, 225 |
| BstMCI | CGRYCG | 1 cut(s) | 321 |
| BstNI | CCWGG | 2 cut(s) | 44, 293 |
| BstSCI | CCNGG | 4 cut(s) | 42, 291, 484, 552 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 3 cut(s) | 107, 174, 301 |
| BstV2I | GAAGAC | 1 cut(s) | 449 |
| BstX2I | RGATCY | 2 cut(s) | 193, 225 |
| BstYI | RGATCY | 2 cut(s) | 193, 225 |
| BstZI | CGGCCG | 1 cut(s) | 318 |
| BsuRI | GGCC | 4 cut(s) | 41, 203, 257, 320 |
| BtgI | CCRYGG | 1 cut(s) | 106 |
| BtsCI | GGATG | 3 cut(s) | 64, 106, 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 604 |
| Cac8I | GCNNGC | 4 cut(s) | 54, 289, 468, 523 |
| CciNI | GCGGCCGC | 1 cut(s) | 318 |
| CfoI | GCGC | 4 cut(s) | 72, 367, 428, 548 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 136 |
| Csp6I | GTAC | 1 cut(s) | 495 |
| CviAII | CATG | 1 cut(s) | 451 |
| CviQI | GTAC | 1 cut(s) | 495 |
| DdeI | CTNAG | 5 cut(s) | 207, 300, 372, 471, 507 |
| DinI | GGCGCC | 2 cut(s) | 71, 427 |
| DpnI | GATC | 2 cut(s) | 195, 227 |
| DpnII | GATC | 2 cut(s) | 193, 225 |
| EaeI | YGGCCR | 3 cut(s) | 201, 255, 318 |
| EagI | CGGCCG | 1 cut(s) | 318 |
| EciI | GGCGGA | 2 cut(s) | 71, 365 |
| EclXI | CGGCCG | 1 cut(s) | 318 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 136 |
| Eco52I | CGGCCG | 1 cut(s) | 318 |
| Eco57I | CTGAAG | 2 cut(s) | 215, 434 |
| Eco88I | CYCGRG | 1 cut(s) | 526 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 77 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoRII | CCWGG | 2 cut(s) | 42, 291 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| EgeI | GGCGCC | 2 cut(s) | 71, 427 |
| EheI | GGCGCC | 2 cut(s) | 71, 427 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| FaeI | CATG | 1 cut(s) | 454 |
| FaiI | YATR | 2 cut(s) | 357, 452 |
| FaqI | GGGAC | 2 cut(s) | 149, 586 |
| FatI | CATG | 1 cut(s) | 450 |
| FauI | CCCGC | 2 cut(s) | 126, 228 |
| FokI | GGATG | 3 cut(s) | 71, 113, 488 |
| FspBI | CTAG | 1 cut(s) | 140 |
| GlaI | GCGC | 4 cut(s) | 71, 366, 427, 547 |
| GsaI | CCCAGC | 2 cut(s) | 35, 571 |
| GsuI | CTGGAG | 1 cut(s) | 188 |
| HaeII | RGCGCY | 3 cut(s) | 73, 368, 429 |
| HaeIII | GGCC | 4 cut(s) | 41, 203, 257, 320 |
| HapII | CCGG | 2 cut(s) | 485, 554 |
| HhaI | GCGC | 4 cut(s) | 72, 367, 428, 548 |
| Hin1I | GRCGYC | 3 cut(s) | 70, 426, 446 |
| Hin1II | CATG | 1 cut(s) | 454 |
| Hin6I | GCGC | 4 cut(s) | 70, 365, 426, 546 |
| HinP1I | GCGC | 4 cut(s) | 70, 365, 426, 546 |
| HincII | GTYRAC | 2 cut(s) | 117, 514 |
| HindII | GTYRAC | 2 cut(s) | 117, 514 |
| HinfI | GANTC | 2 cut(s) | 563, 574 |
| HpaII | CCGG | 2 cut(s) | 485, 554 |
| HphI | GGTGA | 2 cut(s) | 22, 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 117, 514 |
| Hpy188I | TCNGA | 3 cut(s) | 595, 612, 620 |
| Hpy8I | GTNNAC | 2 cut(s) | 117, 514 |
| Hpy99I | CGWCG | 1 cut(s) | 461 |
| HpyAV | CCTTC | 4 cut(s) | 211, 239, 355, 376 |
| HpyCH4III | ACNGT | 4 cut(s) | 89, 121, 518, 608 |
| HpyCH4IV | ACGT | 1 cut(s) | 446 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 95, 190 |
| HpyF3I | CTNAG | 5 cut(s) | 207, 300, 372, 471, 507 |
| HpySE526I | ACGT | 1 cut(s) | 446 |
| Hsp92I | GRCGYC | 3 cut(s) | 70, 426, 446 |
| Hsp92II | CATG | 1 cut(s) | 454 |
| HspAI | GCGC | 4 cut(s) | 70, 365, 426, 546 |
| KasI | GGCGCC | 2 cut(s) | 69, 425 |
| Kzo9I | GATC | 2 cut(s) | 193, 225 |
| LmnI | GCTCC | 5 cut(s) | 28, 64, 169, 296, 484 |
| Lsp1109I | GCAGC | 3 cut(s) | 107, 174, 301 |
| LweI | GCATC | 4 cut(s) | 82, 91, 399, 466 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MaeII | ACGT | 1 cut(s) | 446 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 2 cut(s) | 195, 227 |
| MbiI | CCGCTC | 2 cut(s) | 67, 133 |
| MboI | GATC | 2 cut(s) | 193, 225 |
| MboII | GAAGA | 1 cut(s) | 454 |
| MflI | RGATCY | 2 cut(s) | 193, 225 |
| Mly113I | GGCGCC | 2 cut(s) | 70, 426 |
| MlyI | GAGTC | 2 cut(s) | 557, 568 |
| MmeI | TCCRAC | 2 cut(s) | 252, 573 |
| MseI | TTAA | 1 cut(s) | 264 |
| MspA1I | CMGCKG | 4 cut(s) | 98, 235, 326, 571 |
| MspI | CCGG | 2 cut(s) | 485, 554 |
| MspR9I | CCNGG | 4 cut(s) | 44, 293, 486, 554 |
| Mva1269I | GAATGC | 1 cut(s) | 335 |
| MvaI | CCWGG | 2 cut(s) | 44, 293 |
| NarI | GGCGCC | 2 cut(s) | 70, 426 |
| NciI | CCSGG | 2 cut(s) | 486, 554 |
| NdeII | GATC | 2 cut(s) | 193, 225 |
| NlaIII | CATG | 1 cut(s) | 454 |
| NlaIV | GGNNCC | 5 cut(s) | 71, 137, 391, 427, 520 |
| NmeAIII | GCCGAG | 1 cut(s) | 283 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NotI | GCGGCCGC | 1 cut(s) | 318 |
| PctI | GAATGC | 1 cut(s) | 335 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 435 |
| PfoI | TCCNGGA | 1 cut(s) | 484 |
| PleI | GAGTC | 2 cut(s) | 557, 568 |
| PluTI | GGCGCC | 2 cut(s) | 73, 429 |
| PpsI | GAGTC | 2 cut(s) | 557, 568 |
| PpuMI | RGGWCCY | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 136 |
| Psp6I | CCWGG | 2 cut(s) | 42, 291 |
| PspFI | CCCAGC | 2 cut(s) | 31, 567 |
| PspGI | CCWGG | 2 cut(s) | 42, 291 |
| PspN4I | GGNNCC | 5 cut(s) | 71, 137, 391, 427, 520 |
| PspPI | GGNCC | 2 cut(s) | 40, 136 |
| PspPPI | RGGWCCY | 1 cut(s) | 136 |
| PstI | CTGCAG | 1 cut(s) | 24 |
| PsuI | RGATCY | 2 cut(s) | 193, 225 |
| RsaI | GTAC | 1 cut(s) | 496 |
| RsaNI | GTAC | 1 cut(s) | 495 |
| SaqAI | TTAA | 1 cut(s) | 264 |
| Sau3AI | GATC | 2 cut(s) | 193, 225 |
| Sau96I | GGNCC | 2 cut(s) | 40, 136 |
| SchI | GAGTC | 2 cut(s) | 557, 568 |
| ScrFI | CCNGG | 4 cut(s) | 44, 293, 486, 554 |
| SfaNI | GCATC | 4 cut(s) | 82, 91, 399, 466 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SfoI | GGCGCC | 2 cut(s) | 71, 427 |
| SinI | GGWCC | 1 cut(s) | 136 |
| SspDI | GGCGCC | 2 cut(s) | 69, 425 |
| SspMI | CTAG | 1 cut(s) | 140 |
| StyD4I | CCNGG | 4 cut(s) | 42, 291, 484, 552 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 4 cut(s) | 89, 121, 518, 608 |
| TaiI | ACGT | 1 cut(s) | 449 |
| TauI | GCSGC | 8 cut(s) | 70, 206, 248, 320, 323, 326, 380, 466 |
| Tru1I | TTAA | 1 cut(s) | 264 |
| Tru9I | TTAA | 1 cut(s) | 264 |
| TscAI | CASTG | 1 cut(s) | 611 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 3 cut(s) | 95, 187, 314 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| TspRI | CASTG | 1 cut(s) | 611 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 435 |
| VpaK11BI | GGWCC | 1 cut(s) | 136 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 77 |
| XspI | CTAG | 1 cut(s) | 140 |
| ZraI | GACGTC | 1 cut(s) | 447 |