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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 124 |
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| Acc65I | GGTACC | 1 cut(s) | 1811 |
| AccB1I | GGYRCC | 6 cut(s) | 580, 818, 938, 1239, 1811, 1868 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 327, 757 |
| AccBSI | CCGCTC | 4 cut(s) | 1098, 1237, 1303, 1315 |
| AccI | GTMKAC | 2 cut(s) | 744, 1392 |
| AccII | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| AclWI | GGATC | 3 cut(s) | 681, 846, 1852 |
| AcoI | YGGCCR | 4 cut(s) | 1071, 1374, 1643, 1802 |
| AcsI | RAATTY | 2 cut(s) | 276, 1127 |
| AcuI | CTGAAG | 6 cut(s) | 518, 941, 1190, 1454, 1604, 1785 |
| AcyI | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| AfaI | GTAC | 3 cut(s) | 399, 888, 1813 |
| AflII | CTTAAG | 2 cut(s) | 128, 1190 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgsI | TTSAA | 5 cut(s) | 275, 1127, 1288, 1360, 1510 |
| AjnI | CCWGG | 5 cut(s) | 148, 240, 468, 1572, 1840 |
| AleI | CACNNNNGTG | 1 cut(s) | 947 |
| AluBI | AGCT | 7 cut(s) | 163, 484, 1222, 1352, 1432, 1754, 1879 |
| AluI | AGCT | 7 cut(s) | 163, 484, 1222, 1352, 1432, 1754, 1879 |
| Alw26I | GTCTC | 3 cut(s) | 770, 996, 1623 |
| AlwI | GGATC | 3 cut(s) | 681, 846, 1852 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 757 |
| Ama87I | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| ApeKI | GCWGC | 9 cut(s) | 47, 163, 218, 441, 869, 1402, 1493, 1667, 1876 |
| ApoI | RAATTY | 2 cut(s) | 276, 1127 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 287, 319 |
| Asp718I | GGTACC | 1 cut(s) | 1811 |
| AspLEI | GCGC | 6 cut(s) | 583, 680, 821, 857, 1242, 1871 |
| AsuC2I | CCSGG | 4 cut(s) | 633, 1333, 1774, 1775 |
| AsuHPI | GGTGA | 5 cut(s) | 395, 775, 799, 1075, 1555 |
| AsuNHI | GCTAGC | 1 cut(s) | 76 |
| AvaI | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| AvaII | GGWCC | 5 cut(s) | 384, 525, 1024, 1306, 1721 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1803, 1836 |
| BanI | GGYRCC | 6 cut(s) | 580, 818, 938, 1239, 1811, 1868 |
| BauI | CACGAG | 1 cut(s) | 416 |
| BbvI | GCAGC | 8 cut(s) | 34, 150, 205, 453, 856, 1414, 1480, 1654 |
| BccI | CCATC | 3 cut(s) | 334, 1727, 1802 |
| BceAI | ACGGC | 3 cut(s) | 101, 1058, 1280 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 122, 156, 641, 675 |
| BciT130I | CCWGG | 5 cut(s) | 150, 242, 470, 1574, 1842 |
| BciVI | GTATCC | 1 cut(s) | 1339 |
| BcnI | CCSGG | 4 cut(s) | 633, 1333, 1774, 1775 |
| BcoDI | GTCTC | 3 cut(s) | 770, 996, 1623 |
| BfaI | CTAG | 6 cut(s) | 30, 77, 1103, 1310, 1751, 1857 |
| BfmI | CTRYAG | 2 cut(s) | 738, 1400 |
| BfoI | RGCGCY | 4 cut(s) | 584, 822, 1243, 1872 |
| BfrI | CTTAAG | 2 cut(s) | 128, 1190 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BfuI | GTATCC | 1 cut(s) | 1339 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1866 |
| Bme1390I | CCNGG | 9 cut(s) | 150, 242, 470, 633, 1333, 1574, 1774, 1775, 1842 |
| Bme18I | GGWCC | 5 cut(s) | 384, 525, 1024, 1306, 1721 |
| BmeT110I | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| BmrFI | CCNGG | 9 cut(s) | 150, 242, 470, 633, 1333, 1574, 1774, 1775, 1842 |
| BmrI | ACTGGG | 2 cut(s) | 1472, 1615 |
| BmsI | GCATC | 6 cut(s) | 200, 643, 780, 786, 1678, 1782 |
| BmtI | GCTAGC | 1 cut(s) | 80 |
| BmuI | ACTGGG | 2 cut(s) | 1472, 1615 |
| BpmI | CTGGAG | 4 cut(s) | 765, 1358, 1595, 1704 |
| Bpu10I | CCTNAGC | 1 cut(s) | 458 |
| BpuEI | CTTGAG | 2 cut(s) | 207, 940 |
| BpuMI | CCSGG | 4 cut(s) | 633, 1333, 1774, 1775 |
| Bsa29I | ATCGAT | 1 cut(s) | 194 |
| BsaAI | YACGTR | 1 cut(s) | 1327 |
| BsaHI | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 692, 722 |
| Bse118I | RCCGGY | 3 cut(s) | 872, 935, 1415 |
| Bse1I | ACTGG | 7 cut(s) | 762, 769, 782, 856, 1467, 1610, 1629 |
| Bse3DI | GCAATG | 1 cut(s) | 351 |
| BseBI | CCWGG | 5 cut(s) | 150, 242, 470, 1574, 1842 |
| BseCI | ATCGAT | 1 cut(s) | 194 |
| BseGI | GGATG | 3 cut(s) | 1395, 1735, 1813 |
| BseMI | GCAATG | 1 cut(s) | 351 |
| BseMII | CTCAG | 2 cut(s) | 1533, 1634 |
| BseNI | ACTGG | 7 cut(s) | 762, 769, 782, 856, 1467, 1610, 1629 |
| BseRI | GAGGAG | 2 cut(s) | 1010, 1737 |
| BseX3I | CGGCCG | 2 cut(s) | 1643, 1802 |
| BseXI | GCAGC | 8 cut(s) | 34, 150, 205, 453, 856, 1414, 1480, 1654 |
| BseYI | CCCAGC | 2 cut(s) | 716, 1872 |
| Bsh1236I | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| Bsh1285I | CGRYCG | 5 cut(s) | 61, 170, 1392, 1646, 1805 |
| BshNI | GGYRCC | 6 cut(s) | 580, 818, 938, 1239, 1811, 1868 |
| BshVI | ATCGAT | 1 cut(s) | 194 |
| BsiEI | CGRYCG | 5 cut(s) | 61, 170, 1392, 1646, 1805 |
| BsiHKCI | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| BsiSI | CCGG | 9 cut(s) | 632, 873, 936, 1333, 1416, 1679, 1724, 1774, 1805 |
| BslFI | GGGAC | 5 cut(s) | 224, 538, 1319, 1754, 1815 |
| BsmAI | GTCTC | 3 cut(s) | 770, 996, 1623 |
| BsmBI | CGTCTC | 1 cut(s) | 996 |
| BsmFI | GGGAC | 5 cut(s) | 224, 538, 1319, 1754, 1815 |
| BsoBI | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| Bsp143I | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| Bsp19I | CCATGG | 2 cut(s) | 669, 1497 |
| BspCNI | CTCAG | 2 cut(s) | 1534, 1633 |
| BspDI | ATCGAT | 1 cut(s) | 194 |
| BspFNI | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| BspMAI | CTGCAG | 1 cut(s) | 1404 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspOI | GCTAGC | 1 cut(s) | 80 |
| BspPI | GGATC | 3 cut(s) | 681, 846, 1852 |
| BspT107I | GGYRCC | 6 cut(s) | 580, 818, 938, 1239, 1811, 1868 |
| BspTI | CTTAAG | 2 cut(s) | 128, 1190 |
| BsrBI | CCGCTC | 4 cut(s) | 1098, 1237, 1303, 1315 |
| BsrDI | GCAATG | 1 cut(s) | 351 |
| BsrFI | RCCGGY | 3 cut(s) | 872, 935, 1415 |
| BsrI | ACTGG | 7 cut(s) | 762, 769, 782, 856, 1467, 1610, 1629 |
| BssAI | RCCGGY | 3 cut(s) | 872, 935, 1415 |
| BssMI | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| BssNI | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| BssSI | CACGAG | 1 cut(s) | 416 |
| BssT1I | CCWWGG | 5 cut(s) | 433, 669, 1248, 1377, 1497 |
| Bst2BI | CACGAG | 1 cut(s) | 416 |
| Bst2UI | CCWGG | 5 cut(s) | 150, 242, 470, 1574, 1842 |
| Bst4CI | ACNGT | 4 cut(s) | 388, 739, 827, 1390 |
| Bst6I | CTCTTC | 4 cut(s) | 63, 987, 1031, 1162 |
| BstACI | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| BstAFI | CTTAAG | 2 cut(s) | 128, 1190 |
| BstBAI | YACGTR | 1 cut(s) | 1327 |
| BstDEI | CTNAG | 3 cut(s) | 458, 1542, 1620 |
| BstDSI | CCRYGG | 4 cut(s) | 387, 669, 1276, 1497 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1247, 1541 |
| BstF5I | GGATG | 3 cut(s) | 1395, 1735, 1813 |
| BstFNI | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| BstH2I | RGCGCY | 4 cut(s) | 584, 822, 1243, 1872 |
| BstHHI | GCGC | 6 cut(s) | 583, 680, 821, 857, 1242, 1871 |
| BstKTI | GATC | 5 cut(s) | 61, 234, 676, 841, 1847 |
| BstMAI | GTCTC | 3 cut(s) | 770, 996, 1623 |
| BstMBI | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| BstMCI | CGRYCG | 5 cut(s) | 61, 170, 1392, 1646, 1805 |
| BstNI | CCWGG | 5 cut(s) | 150, 242, 470, 1574, 1842 |
| BstNSI | RCATGY | 3 cut(s) | 328, 709, 1120 |
| BstSCI | CCNGG | 9 cut(s) | 148, 240, 468, 631, 1331, 1572, 1772, 1773, 1840 |
| BstSFI | CTRYAG | 2 cut(s) | 738, 1400 |
| BstUI | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| BstV1I | GCAGC | 8 cut(s) | 34, 150, 205, 453, 856, 1414, 1480, 1654 |
| BstX2I | RGATCY | 1 cut(s) | 1844 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 670, 949, 1573, 1786 |
| BstYI | RGATCY | 1 cut(s) | 1844 |
| BstZI | CGGCCG | 2 cut(s) | 1643, 1802 |
| Bsu15I | ATCGAT | 1 cut(s) | 194 |
| BsuI | GTATCC | 1 cut(s) | 1339 |
| BsuTUI | ATCGAT | 1 cut(s) | 194 |
| BtgI | CCRYGG | 4 cut(s) | 387, 669, 1276, 1497 |
| BtgZI | GCGATG | 4 cut(s) | 666, 845, 1280, 1805 |
| BtsCI | GGATG | 3 cut(s) | 1395, 1735, 1813 |
| BtsI | GCAGTG | 1 cut(s) | 1833 |
| BtsIMutI | CAGTG | 3 cut(s) | 755, 789, 1833 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| CaiI | CAGNNNCTG | 1 cut(s) | 757 |
| CciNI | GCGGCCGC | 1 cut(s) | 1643 |
| CfoI | GCGC | 6 cut(s) | 583, 680, 821, 857, 1242, 1871 |
| Cfr10I | RCCGGY | 3 cut(s) | 872, 935, 1415 |
| Cfr42I | CCGCGG | 1 cut(s) | 1279 |
| Cfr9I | CCCGGG | 1 cut(s) | 1773 |
| ClaI | ATCGAT | 1 cut(s) | 194 |
| CpoI | CGGWCCG | 1 cut(s) | 384 |
| CseI | GACGC | 5 cut(s) | 53, 350, 989, 1016, 1585 |
| Csp6I | GTAC | 3 cut(s) | 398, 887, 1812 |
| CspI | CGGWCCG | 1 cut(s) | 384 |
| CviQI | GTAC | 3 cut(s) | 398, 887, 1812 |
| DdeI | CTNAG | 3 cut(s) | 458, 1542, 1620 |
| DinI | GGCGCC | 4 cut(s) | 582, 820, 1241, 1870 |
| DpnI | GATC | 5 cut(s) | 60, 233, 675, 840, 1846 |
| DpnII | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| EaeI | YGGCCR | 4 cut(s) | 1071, 1374, 1643, 1802 |
| EagI | CGGCCG | 2 cut(s) | 1643, 1802 |
| Eam1104I | CTCTTC | 4 cut(s) | 63, 987, 1031, 1162 |
| EarI | CTCTTC | 4 cut(s) | 63, 987, 1031, 1162 |
| EciI | GGCGGA | 6 cut(s) | 397, 407, 1016, 1268, 1402, 1742 |
| EclXI | CGGCCG | 2 cut(s) | 1643, 1802 |
| Eco130I | CCWWGG | 5 cut(s) | 433, 669, 1248, 1377, 1497 |
| Eco147I | AGGCCT | 1 cut(s) | 925 |
| Eco47I | GGWCC | 5 cut(s) | 384, 525, 1024, 1306, 1721 |
| Eco52I | CGGCCG | 2 cut(s) | 1643, 1802 |
| Eco57I | CTGAAG | 6 cut(s) | 518, 941, 1190, 1454, 1604, 1785 |
| Eco88I | CYCGRG | 3 cut(s) | 6, 899, 1773 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1247, 1541 |
| EcoO109I | RGGNCCY | 3 cut(s) | 525, 1051, 1306 |
| EcoRI | GAATTC | 1 cut(s) | 1127 |
| EcoRII | CCWGG | 5 cut(s) | 148, 240, 468, 1572, 1840 |
| EcoT14I | CCWWGG | 5 cut(s) | 433, 669, 1248, 1377, 1497 |
| EcoT22I | ATGCAT | 1 cut(s) | 1797 |
| EgeI | GGCGCC | 4 cut(s) | 582, 820, 1241, 1870 |
| EheI | GGCGCC | 4 cut(s) | 582, 820, 1241, 1870 |
| ErhI | CCWWGG | 5 cut(s) | 433, 669, 1248, 1377, 1497 |
| Esp3I | CGTCTC | 1 cut(s) | 996 |
| FaqI | GGGAC | 5 cut(s) | 224, 538, 1319, 1754, 1815 |
| FauI | CCCGC | 9 cut(s) | 62, 91, 857, 869, 1062, 1283, 1296, 1398, 1651 |
| FblI | GTMKAC | 2 cut(s) | 744, 1392 |
| FokI | GGATG | 3 cut(s) | 1382, 1742, 1820 |
| FspBI | CTAG | 6 cut(s) | 30, 77, 1103, 1310, 1751, 1857 |
| GlaI | GCGC | 6 cut(s) | 582, 679, 820, 856, 1241, 1870 |
| GsaI | CCCAGC | 2 cut(s) | 720, 1876 |
| GsuI | CTGGAG | 4 cut(s) | 765, 1358, 1595, 1704 |
| HaeII | RGCGCY | 4 cut(s) | 584, 822, 1243, 1872 |
| HapII | CCGG | 9 cut(s) | 632, 873, 936, 1333, 1416, 1679, 1724, 1774, 1805 |
| HgaI | GACGC | 5 cut(s) | 53, 350, 989, 1016, 1585 |
| HhaI | GCGC | 6 cut(s) | 583, 680, 821, 857, 1242, 1871 |
| Hin1I | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| Hin6I | GCGC | 6 cut(s) | 581, 678, 819, 855, 1240, 1869 |
| HinP1I | GCGC | 6 cut(s) | 581, 678, 819, 855, 1240, 1869 |
| HincII | GTYRAC | 2 cut(s) | 745, 1393 |
| HindII | GTYRAC | 2 cut(s) | 745, 1393 |
| HpaII | CCGG | 9 cut(s) | 632, 873, 936, 1333, 1416, 1679, 1724, 1774, 1805 |
| HphI | GGTGA | 5 cut(s) | 395, 775, 799, 1075, 1555 |
| Hpy166II | GTNNAC | 4 cut(s) | 454, 745, 1228, 1393 |
| Hpy188I | TCNGA | 8 cut(s) | 312, 498, 604, 775, 960, 1170, 1765, 1849 |
| Hpy188III | TCNNGA | 6 cut(s) | 224, 490, 592, 620, 842, 1103 |
| Hpy8I | GTNNAC | 4 cut(s) | 454, 745, 1228, 1393 |
| Hpy99I | CGWCG | 3 cut(s) | 827, 935, 1010 |
| HpyAV | CCTTC | 9 cut(s) | 172, 371, 493, 538, 1165, 1264, 1354, 1468, 1516 |
| HpyCH4III | ACNGT | 4 cut(s) | 388, 739, 827, 1390 |
| HpyCH4IV | ACGT | 3 cut(s) | 251, 1230, 1326 |
| HpyCH4V | TGCA | 6 cut(s) | 441, 1090, 1204, 1402, 1484, 1795 |
| HpyF3I | CTNAG | 3 cut(s) | 458, 1542, 1620 |
| HpySE526I | ACGT | 3 cut(s) | 251, 1230, 1326 |
| Hsp92I | GRCGYC | 7 cut(s) | 361, 581, 819, 981, 1240, 1596, 1869 |
| HspAI | GCGC | 6 cut(s) | 581, 678, 819, 855, 1240, 1869 |
| KasI | GGCGCC | 4 cut(s) | 580, 818, 1239, 1868 |
| KpnI | GGTACC | 1 cut(s) | 1815 |
| KroI | GCCGGC | 2 cut(s) | 872, 1415 |
| KroNI | GCCGGC | 2 cut(s) | 874, 1417 |
| KspI | CCGCGG | 1 cut(s) | 1279 |
| Kzo9I | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| LmnI | GCTCC | 6 cut(s) | 879, 1339, 1363, 1429, 1681, 1843 |
| Lsp1109I | GCAGC | 8 cut(s) | 34, 150, 205, 453, 856, 1414, 1480, 1654 |
| LweI | GCATC | 6 cut(s) | 200, 643, 780, 786, 1678, 1782 |
| MaeI | CTAG | 6 cut(s) | 30, 77, 1103, 1310, 1751, 1857 |
| MaeII | ACGT | 3 cut(s) | 251, 1230, 1326 |
| MaeIII | GTNAC | 4 cut(s) | 247, 635, 913, 1561 |
| MalI | GATC | 5 cut(s) | 60, 233, 675, 840, 1846 |
| MbiI | CCGCTC | 4 cut(s) | 1098, 1237, 1303, 1315 |
| MboI | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| MflI | RGATCY | 1 cut(s) | 1844 |
| MluCI | AATT | 4 cut(s) | 107, 276, 683, 1127 |
| Mly113I | GGCGCC | 4 cut(s) | 581, 819, 1240, 1869 |
| MlyI | GAGTC | 5 cut(s) | 206, 772, 1418, 1738, 1837 |
| MmeI | TCCRAC | 3 cut(s) | 634, 1161, 1422 |
| Mph1103I | ATGCAT | 1 cut(s) | 1797 |
| MroNI | GCCGGC | 2 cut(s) | 872, 1415 |
| MseI | TTAA | 3 cut(s) | 129, 597, 1191 |
| MslI | CAYNNNNRTG | 2 cut(s) | 947, 1790 |
| MspA1I | CMGCKG | 7 cut(s) | 218, 716, 1278, 1405, 1493, 1658, 1741 |
| MspCI | CTTAAG | 2 cut(s) | 128, 1190 |
| MspI | CCGG | 9 cut(s) | 632, 873, 936, 1333, 1416, 1679, 1724, 1774, 1805 |
| MspR9I | CCNGG | 9 cut(s) | 150, 242, 470, 633, 1333, 1574, 1774, 1775, 1842 |
| MvaI | CCWGG | 5 cut(s) | 150, 242, 470, 1574, 1842 |
| MvnI | CGCG | 8 cut(s) | 57, 302, 651, 678, 864, 1010, 1278, 1520 |
| NaeI | GCCGGC | 2 cut(s) | 874, 1417 |
| NarI | GGCGCC | 4 cut(s) | 581, 819, 1240, 1869 |
| NciI | CCSGG | 4 cut(s) | 633, 1333, 1774, 1775 |
| NcoI | CCATGG | 2 cut(s) | 669, 1497 |
| NdeII | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| NgoMIV | GCCGGC | 2 cut(s) | 872, 1415 |
| NheI | GCTAGC | 1 cut(s) | 76 |
| NmeAIII | GCCGAG | 2 cut(s) | 795, 1780 |
| NmuCI | GTSAC | 3 cut(s) | 247, 913, 1561 |
| NotI | GCGGCCGC | 1 cut(s) | 1643 |
| NsiI | ATGCAT | 1 cut(s) | 1797 |
| NspI | RCATGY | 3 cut(s) | 328, 709, 1120 |
| OliI | CACNNNNGTG | 1 cut(s) | 947 |
| PaeR7I | CTCGAG | 1 cut(s) | 6 |
| PaqCI | CACCTGC | 1 cut(s) | 124 |
| PasI | CCCWGGG | 1 cut(s) | 149 |
| PceI | AGGCCT | 1 cut(s) | 925 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PdiI | GCCGGC | 2 cut(s) | 874, 1417 |
| PfeI | GAWTC | 7 cut(s) | 121, 196, 493, 503, 623, 1106, 1502 |
| PflFI | GACNNNGTC | 1 cut(s) | 1607 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 327, 757 |
| PfoI | TCCNGGA | 1 cut(s) | 1840 |
| Ple19I | CGATCG | 1 cut(s) | 61 |
| PleI | GAGTC | 5 cut(s) | 206, 772, 1417, 1738, 1836 |
| PluTI | GGCGCC | 4 cut(s) | 584, 822, 1243, 1872 |
| PpsI | GAGTC | 5 cut(s) | 206, 772, 1417, 1738, 1836 |
| Ppu21I | YACGTR | 1 cut(s) | 1327 |
| PpuMI | RGGWCCY | 2 cut(s) | 525, 1306 |
| PscI | ACATGT | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 2 cut(s) | 525, 1306 |
| Psp6I | CCWGG | 5 cut(s) | 148, 240, 468, 1572, 1840 |
| PspFI | CCCAGC | 2 cut(s) | 716, 1872 |
| PspGI | CCWGG | 5 cut(s) | 148, 240, 468, 1572, 1840 |
| PspPPI | RGGWCCY | 2 cut(s) | 525, 1306 |
| PspXI | VCTCGAGB | 1 cut(s) | 6 |
| PstI | CTGCAG | 1 cut(s) | 1404 |
| PstNI | CAGNNNCTG | 1 cut(s) | 757 |
| PsuI | RGATCY | 1 cut(s) | 1844 |
| PsyI | GACNNNGTC | 1 cut(s) | 1607 |
| PvuI | CGATCG | 1 cut(s) | 61 |
| RsaI | GTAC | 3 cut(s) | 399, 888, 1813 |
| RsaNI | GTAC | 3 cut(s) | 398, 887, 1812 |
| RseI | CAYNNNNRTG | 2 cut(s) | 947, 1790 |
| Rsr2I | CGGWCCG | 1 cut(s) | 384 |
| RsrII | CGGWCCG | 1 cut(s) | 384 |
| SacII | CCGCGG | 1 cut(s) | 1279 |
| SalI | GTCGAC | 2 cut(s) | 743, 1391 |
| SaqAI | TTAA | 3 cut(s) | 129, 597, 1191 |
| Sau3AI | GATC | 5 cut(s) | 58, 231, 673, 838, 1844 |
| SchI | GAGTC | 5 cut(s) | 206, 772, 1418, 1738, 1837 |
| ScrFI | CCNGG | 9 cut(s) | 150, 242, 470, 633, 1333, 1574, 1774, 1775, 1842 |
| SfaNI | GCATC | 6 cut(s) | 200, 643, 780, 786, 1678, 1782 |
| SfcI | CTRYAG | 2 cut(s) | 738, 1400 |
| SfoI | GGCGCC | 4 cut(s) | 582, 820, 1241, 1870 |
| Sfr274I | CTCGAG | 1 cut(s) | 6 |
| Sfr303I | CCGCGG | 1 cut(s) | 1279 |
| SgrAI | CRCCGGYG | 1 cut(s) | 935 |
| SgrBI | CCGCGG | 1 cut(s) | 1279 |
| SinI | GGWCC | 5 cut(s) | 384, 525, 1024, 1306, 1721 |
| SlaI | CTCGAG | 1 cut(s) | 6 |
| SmaI | CCCGGG | 1 cut(s) | 1775 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 947, 1790 |
| SmlI | CTYRAG | 5 cut(s) | 6, 128, 222, 919, 1190 |
| SmoI | CTYRAG | 5 cut(s) | 6, 128, 222, 919, 1190 |
| Sse9I | AATT | 4 cut(s) | 107, 276, 683, 1127 |
| SseBI | AGGCCT | 1 cut(s) | 925 |
| SspDI | GGCGCC | 4 cut(s) | 580, 818, 1239, 1868 |
| SspMI | CTAG | 6 cut(s) | 30, 77, 1103, 1310, 1751, 1857 |
| StuI | AGGCCT | 1 cut(s) | 925 |
| StyD4I | CCNGG | 9 cut(s) | 148, 240, 468, 631, 1331, 1572, 1772, 1773, 1840 |
| StyI | CCWWGG | 5 cut(s) | 433, 669, 1248, 1377, 1497 |
| TaaI | ACNGT | 4 cut(s) | 388, 739, 827, 1390 |
| TaiI | ACGT | 3 cut(s) | 254, 1233, 1329 |
| TasI | AATT | 4 cut(s) | 107, 276, 683, 1127 |
| TfiI | GAWTC | 7 cut(s) | 121, 196, 493, 503, 623, 1106, 1502 |
| Tru1I | TTAA | 3 cut(s) | 129, 597, 1191 |
| Tru9I | TTAA | 3 cut(s) | 129, 597, 1191 |
| TscAI | CASTG | 3 cut(s) | 762, 789, 1840 |
| TseFI | GTSAC | 3 cut(s) | 247, 913, 1561 |
| TseI | GCWGC | 9 cut(s) | 47, 163, 218, 441, 869, 1402, 1493, 1667, 1876 |
| Tsp45I | GTSAC | 3 cut(s) | 247, 913, 1561 |
| TspDTI | ATGAA | 5 cut(s) | 191, 362, 1002, 1283, 1774 |
| TspMI | CCCGGG | 1 cut(s) | 1773 |
| TspRI | CASTG | 3 cut(s) | 762, 789, 1840 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1607 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 327, 757 |
| Vha464I | CTTAAG | 2 cut(s) | 128, 1190 |
| VpaK11BI | GGWCC | 5 cut(s) | 384, 525, 1024, 1306, 1721 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1247, 1541 |
| XapI | RAATTY | 2 cut(s) | 276, 1127 |
| XbaI | TCTAGA | 1 cut(s) | 1102 |
| XceI | RCATGY | 3 cut(s) | 328, 709, 1120 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1219 |
| XhoI | CTCGAG | 1 cut(s) | 6 |
| XmaI | CCCGGG | 1 cut(s) | 1773 |
| XmiI | GTMKAC | 2 cut(s) | 744, 1392 |
| XspI | CTAG | 6 cut(s) | 30, 77, 1103, 1310, 1751, 1857 |
| Zsp2I | ATGCAT | 1 cut(s) | 1797 |