Cytosolic purine
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 439, 993, 1038 |
| Acc65I | GGTACC | 1 cut(s) | 321 |
| AccB1I | GGYRCC | 5 cut(s) | 321, 335, 523, 1582, 2243 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| AccBSI | CCGCTC | 5 cut(s) | 1336, 1645, 1672, 1885, 2014 |
| AccI | GTMKAC | 2 cut(s) | 345, 1026 |
| AccII | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| AclWI | GGATC | 3 cut(s) | 965, 1110, 1305 |
| AcoI | YGGCCR | 5 cut(s) | 3, 603, 2073, 2136, 2286 |
| AcsI | RAATTY | 2 cut(s) | 551, 2171 |
| AcuI | CTGAAG | 4 cut(s) | 131, 924, 1717, 2139 |
| AcvI | CACGTG | 1 cut(s) | 2423 |
| AcyI | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| AfaI | GTAC | 9 cut(s) | 294, 323, 665, 683, 818, 920, 1667, 2338, 2461 |
| AflIII | ACRYGT | 4 cut(s) | 48, 1040, 1972, 2226 |
| AgsI | TTSAA | 6 cut(s) | 134, 1052, 2158, 2233, 2534, 2549 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 769, 2475 |
| AjiI | CACGTC | 2 cut(s) | 49, 2278 |
| AjnI | CCWGG | 3 cut(s) | 158, 246, 1956 |
| AleI | CACNNNNGTG | 1 cut(s) | 1245 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1634, 1666 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| AlwI | GGATC | 3 cut(s) | 965, 1110, 1305 |
| Ama87I | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| ApaI | GGGCCC | 2 cut(s) | 1525, 2212 |
| ApoI | RAATTY | 2 cut(s) | 551, 2171 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1276, 1308, 1342, 1374 |
| Asp718I | GGTACC | 1 cut(s) | 321 |
| AsuC2I | CCSGG | 9 cut(s) | 40, 297, 631, 1062, 1178, 2212, 2213, 2449, 2450 |
| AsuHPI | GGTGA | 8 cut(s) | 221, 430, 1183, 1228, 1232, 1259, 1435, 1607 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaI | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| AvaII | GGWCC | 5 cut(s) | 641, 786, 1358, 2382, 2493 |
| BaeGI | GKGCMC | 2 cut(s) | 1525, 2212 |
| BalI | TGGCCA | 2 cut(s) | 5, 605 |
| BanI | GGYRCC | 5 cut(s) | 321, 335, 523, 1582, 2243 |
| BanII | GRGCYC | 4 cut(s) | 200, 416, 1525, 2212 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 276, 308 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbrPI | CACGTG | 1 cut(s) | 2423 |
| BbsI | GAAGAC | 2 cut(s) | 1565, 2186 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BbvCI | CCTCAGC | 1 cut(s) | 1817 |
| BccI | CCATC | 8 cut(s) | 161, 358, 1093, 1247, 1533, 1952, 2065, 2450 |
| BceAI | ACGGC | 8 cut(s) | 326, 349, 464, 829, 1418, 1574, 1728, 2522 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 3 cut(s) | 160, 248, 1958 |
| BcnI | CCSGG | 9 cut(s) | 40, 297, 631, 1062, 1178, 2212, 2213, 2449, 2450 |
| BfaI | CTAG | 3 cut(s) | 201, 267, 1601 |
| BfmI | CTRYAG | 3 cut(s) | 105, 2006, 2463 |
| BfoI | RGCGCY | 8 cut(s) | 247, 694, 740, 1193, 1457, 1471, 1586, 2247 |
| BfuAI | ACCTGC | 3 cut(s) | 439, 993, 1038 |
| BlpI | GCTNAGC | 3 cut(s) | 1193, 1738, 1881 |
| Bme18I | GGWCC | 5 cut(s) | 641, 786, 1358, 2382, 2493 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 769, 2475 |
| BmeT110I | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| BmgBI | CACGTC | 2 cut(s) | 49, 2278 |
| BmrI | ACTGGG | 2 cut(s) | 1975, 2469 |
| BmsI | GCATC | 3 cut(s) | 447, 1215, 1329 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BmuI | ACTGGG | 2 cut(s) | 1975, 2469 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2312 |
| BpiI | GAAGAC | 2 cut(s) | 1565, 2186 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 1589, 1621 |
| BpmI | CTGGAG | 4 cut(s) | 1478, 1823, 1979, 2456 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1817 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1193, 1738, 1881 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| BpuMI | CCSGG | 9 cut(s) | 40, 297, 631, 1062, 1178, 2212, 2213, 2449, 2450 |
| BsaAI | YACGTR | 2 cut(s) | 685, 2423 |
| BsaBI | GATNNNNATC | 1 cut(s) | 368 |
| BsaHI | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| BsaI | GGTCTC | 4 cut(s) | 457, 1841, 1947, 2462 |
| BsaWI | WCCGGW | 4 cut(s) | 384, 402, 892, 1210 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1121, 1151, 1294, 1324, 1494, 1524, 1634, 1664 |
| Bse118I | RCCGGY | 3 cut(s) | 726, 1378, 2281 |
| Bse1I | ACTGG | 7 cut(s) | 782, 1012, 1234, 1415, 1875, 1981, 2475 |
| Bse3DI | GCAATG | 1 cut(s) | 2000 |
| Bse8I | GATNNNNATC | 1 cut(s) | 368 |
| BseBI | CCWGG | 3 cut(s) | 160, 248, 1958 |
| BseGI | GGATG | 9 cut(s) | 153, 369, 393, 448, 1258, 1344, 2076, 2368, 2461 |
| BseJI | GATNNNNATC | 1 cut(s) | 368 |
| BseMI | GCAATG | 1 cut(s) | 2000 |
| BseMII | CTCAG | 8 cut(s) | 342, 855, 1184, 1295, 1752, 1808, 1872, 2102 |
| BseNI | ACTGG | 7 cut(s) | 782, 1012, 1234, 1415, 1875, 1981, 2475 |
| BseRI | GAGGAG | 1 cut(s) | 1421 |
| BseSI | GKGCMC | 2 cut(s) | 1525, 2212 |
| BseX3I | CGGCCG | 1 cut(s) | 2136 |
| BseYI | CCCAGC | 9 cut(s) | 463, 1158, 1319, 1439, 1675, 2089, 2326, 2385, 2397 |
| BsgI | GTGCAG | 2 cut(s) | 1289, 2069 |
| Bsh1236I | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| Bsh1285I | CGRYCG | 3 cut(s) | 2139, 2513, 2517 |
| BshNI | GGYRCC | 5 cut(s) | 321, 335, 523, 1582, 2243 |
| BsiEI | CGRYCG | 3 cut(s) | 2139, 2513, 2517 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| BslFI | GGGAC | 6 cut(s) | 776, 799, 924, 1291, 2282, 2368 |
| BsmBI | CGTCTC | 2 cut(s) | 1497, 1981 |
| BsmFI | GGGAC | 6 cut(s) | 776, 799, 924, 1291, 2282, 2368 |
| BsmI | GAATGC | 1 cut(s) | 1942 |
| Bso31I | GGTCTC | 4 cut(s) | 457, 1841, 1947, 2462 |
| BsoBI | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| Bsp120I | GGGCCC | 2 cut(s) | 1521, 2208 |
| Bsp1286I | GDGCHC | 4 cut(s) | 200, 416, 1525, 2212 |
| Bsp143I | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1193, 1738, 1881 |
| Bsp68I | TCGCGA | 1 cut(s) | 1080 |
| BspCNI | CTCAG | 8 cut(s) | 341, 856, 1185, 1294, 1751, 1809, 1873, 2103 |
| BspFNI | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| BspMAI | CTGCAG | 2 cut(s) | 109, 2010 |
| BspMI | ACCTGC | 3 cut(s) | 439, 993, 1038 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 3 cut(s) | 965, 1110, 1305 |
| BspT107I | GGYRCC | 5 cut(s) | 321, 335, 523, 1582, 2243 |
| BspTNI | GGTCTC | 4 cut(s) | 457, 1841, 1947, 2462 |
| BsrBI | CCGCTC | 5 cut(s) | 1336, 1645, 1672, 1885, 2014 |
| BsrDI | GCAATG | 1 cut(s) | 2000 |
| BsrFI | RCCGGY | 3 cut(s) | 726, 1378, 2281 |
| BsrI | ACTGG | 7 cut(s) | 782, 1012, 1234, 1415, 1875, 1981, 2475 |
| BssAI | RCCGGY | 3 cut(s) | 726, 1378, 2281 |
| BssMI | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| BssNI | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 2 cut(s) | 502, 1243 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 3 cut(s) | 160, 248, 1958 |
| Bst4CI | ACNGT | 7 cut(s) | 439, 649, 809, 1168, 1267, 1288, 1477 |
| Bst6I | CTCTTC | 2 cut(s) | 933, 1491 |
| BstACI | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| BstBAI | YACGTR | 2 cut(s) | 685, 2423 |
| BstDEI | CTNAG | 9 cut(s) | 328, 758, 864, 1193, 1281, 1738, 1817, 1881, 2111 |
| BstDSI | CCRYGG | 4 cut(s) | 648, 1167, 1263, 1924 |
| BstEII | GGTNACC | 1 cut(s) | 2101 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 879, 1247 |
| BstF5I | GGATG | 9 cut(s) | 153, 369, 393, 448, 1258, 1344, 2076, 2368, 2461 |
| BstFNI | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| BstH2I | RGCGCY | 8 cut(s) | 247, 694, 740, 1193, 1457, 1471, 1586, 2247 |
| BstKTI | GATC | 8 cut(s) | 750, 830, 960, 1105, 1300, 1998, 2500, 2513 |
| BstMBI | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| BstMCI | CGRYCG | 3 cut(s) | 2139, 2513, 2517 |
| BstNI | CCWGG | 3 cut(s) | 160, 248, 1958 |
| BstNSI | RCATGY | 1 cut(s) | 2230 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2312 |
| BstPI | GGTNACC | 1 cut(s) | 2101 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 2006, 2463 |
| BstSLI | GKGCMC | 2 cut(s) | 1525, 2212 |
| BstUI | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| BstV2I | GAAGAC | 2 cut(s) | 1565, 2186 |
| BstZI | CGGCCG | 1 cut(s) | 2136 |
| BtgI | CCRYGG | 4 cut(s) | 648, 1167, 1263, 1924 |
| BtgZI | GCGATG | 2 cut(s) | 355, 1112 |
| BtrI | CACGTC | 2 cut(s) | 49, 2278 |
| BtsCI | GGATG | 9 cut(s) | 153, 369, 393, 448, 1258, 1344, 2076, 2368, 2461 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 512 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 116, 444, 512, 1422, 2183 |
| BtuMI | TCGCGA | 1 cut(s) | 1080 |
| BveI | ACCTGC | 3 cut(s) | 439, 993, 1038 |
| CciNI | GCGGCCGC | 1 cut(s) | 2136 |
| Cfr10I | RCCGGY | 3 cut(s) | 726, 1378, 2281 |
| Cfr42I | CCGCGG | 1 cut(s) | 1927 |
| Cfr9I | CCCGGG | 2 cut(s) | 2211, 2448 |
| CseI | GACGC | 7 cut(s) | 80, 176, 1091, 1776, 1928, 1963, 2253 |
| Csp6I | GTAC | 9 cut(s) | 293, 322, 664, 682, 817, 919, 1666, 2337, 2460 |
| CviAII | CATG | 5 cut(s) | 607, 1135, 1769, 2227, 2317 |
| CviQI | GTAC | 9 cut(s) | 293, 322, 664, 682, 817, 919, 1666, 2337, 2460 |
| DdeI | CTNAG | 9 cut(s) | 328, 758, 864, 1193, 1281, 1738, 1817, 1881, 2111 |
| DinI | GGCGCC | 2 cut(s) | 1584, 2245 |
| DpnI | GATC | 8 cut(s) | 749, 829, 959, 1104, 1299, 1997, 2499, 2512 |
| DpnII | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| DriI | GACNNNNNGTC | 2 cut(s) | 769, 2475 |
| EaeI | YGGCCR | 5 cut(s) | 3, 603, 2073, 2136, 2286 |
| EagI | CGGCCG | 1 cut(s) | 2136 |
| Eam1104I | CTCTTC | 2 cut(s) | 933, 1491 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 769, 2475 |
| EarI | CTCTTC | 2 cut(s) | 933, 1491 |
| Ecl136II | GAGCTC | 1 cut(s) | 198 |
| EclXI | CGGCCG | 1 cut(s) | 2136 |
| Eco130I | CCWWGG | 2 cut(s) | 502, 1243 |
| Eco24I | GRGCYC | 4 cut(s) | 200, 416, 1525, 2212 |
| Eco31I | GGTCTC | 4 cut(s) | 457, 1841, 1947, 2462 |
| Eco32I | GATATC | 1 cut(s) | 1755 |
| Eco47I | GGWCC | 5 cut(s) | 641, 786, 1358, 2382, 2493 |
| Eco52I | CGGCCG | 1 cut(s) | 2136 |
| Eco53kI | GAGCTC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 4 cut(s) | 131, 924, 1717, 2139 |
| Eco72I | CACGTG | 1 cut(s) | 2423 |
| Eco88I | CYCGRG | 4 cut(s) | 2211, 2344, 2448, 2487 |
| Eco91I | GGTNACC | 1 cut(s) | 2101 |
| EcoICRI | GAGCTC | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 879, 1247 |
| EcoO109I | RGGNCCY | 6 cut(s) | 641, 786, 1358, 1521, 2208, 2382 |
| EcoO65I | GGTNACC | 1 cut(s) | 2101 |
| EcoRII | CCWGG | 3 cut(s) | 158, 246, 1956 |
| EcoRV | GATATC | 1 cut(s) | 1755 |
| EcoT14I | CCWWGG | 2 cut(s) | 502, 1243 |
| EcoT38I | GRGCYC | 4 cut(s) | 200, 416, 1525, 2212 |
| EgeI | GGCGCC | 2 cut(s) | 1584, 2245 |
| EheI | GGCGCC | 2 cut(s) | 1584, 2245 |
| ErhI | CCWWGG | 2 cut(s) | 502, 1243 |
| Esp3I | CGTCTC | 2 cut(s) | 1497, 1981 |
| FaeI | CATG | 5 cut(s) | 610, 1138, 1772, 2230, 2320 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 897, 929 |
| FaqI | GGGAC | 6 cut(s) | 776, 799, 924, 1291, 2282, 2368 |
| FatI | CATG | 5 cut(s) | 606, 1134, 1768, 2226, 2316 |
| FauNDI | CATATG | 1 cut(s) | 1662 |
| FblI | GTMKAC | 2 cut(s) | 345, 1026 |
| FokI | GGATG | 9 cut(s) | 140, 376, 400, 455, 1265, 1351, 2083, 2355, 2468 |
| FriOI | GRGCYC | 4 cut(s) | 200, 416, 1525, 2212 |
| FspBI | CTAG | 3 cut(s) | 201, 267, 1601 |
| GsaI | CCCAGC | 9 cut(s) | 467, 1162, 1323, 1443, 1679, 2093, 2330, 2389, 2401 |
| GsuI | CTGGAG | 4 cut(s) | 1478, 1823, 1979, 2456 |
| HaeII | RGCGCY | 8 cut(s) | 247, 694, 740, 1193, 1457, 1471, 1586, 2247 |
| HgaI | GACGC | 7 cut(s) | 80, 176, 1091, 1776, 1928, 1963, 2253 |
| Hin1I | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| Hin1II | CATG | 5 cut(s) | 610, 1138, 1772, 2230, 2320 |
| HincII | GTYRAC | 3 cut(s) | 346, 382, 1027 |
| HindII | GTYRAC | 3 cut(s) | 346, 382, 1027 |
| HpaI | GTTAAC | 1 cut(s) | 382 |
| HphI | GGTGA | 8 cut(s) | 221, 430, 1183, 1228, 1232, 1259, 1435, 1607 |
| Hpy166II | GTNNAC | 8 cut(s) | 346, 382, 484, 682, 715, 921, 1027, 1174 |
| Hpy188III | TCNNGA | 7 cut(s) | 191, 454, 485, 751, 1079, 1840, 2435 |
| Hpy8I | GTNNAC | 8 cut(s) | 346, 382, 484, 682, 715, 921, 1027, 1174 |
| Hpy99I | CGWCG | 9 cut(s) | 242, 347, 350, 809, 1085, 1292, 1439, 1792, 2413 |
| HpyCH4III | ACNGT | 7 cut(s) | 439, 649, 809, 1168, 1267, 1288, 1477 |
| HpyCH4IV | ACGT | 8 cut(s) | 9, 48, 398, 684, 929, 1042, 2277, 2422 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 535, 702, 1270, 1375, 1940, 2008, 2050 |
| HpyF3I | CTNAG | 9 cut(s) | 328, 758, 864, 1193, 1281, 1738, 1817, 1881, 2111 |
| HpySE526I | ACGT | 8 cut(s) | 9, 48, 398, 684, 929, 1042, 2277, 2422 |
| Hsp92I | GRCGYC | 5 cut(s) | 1583, 1787, 1920, 2244, 2264 |
| Hsp92II | CATG | 5 cut(s) | 610, 1138, 1772, 2230, 2320 |
| KasI | GGCGCC | 2 cut(s) | 1582, 2243 |
| KflI | GGGWCCC | 1 cut(s) | 2382 |
| KpnI | GGTACC | 1 cut(s) | 325 |
| KroI | GCCGGC | 1 cut(s) | 726 |
| KroNI | GCCGGC | 1 cut(s) | 728 |
| KspAI | GTTAAC | 1 cut(s) | 382 |
| KspI | CCGCGG | 1 cut(s) | 1927 |
| Kzo9I | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| LmnI | GCTCC | 8 cut(s) | 278, 465, 734, 1333, 1408, 1642, 1987, 2011 |
| LweI | GCATC | 3 cut(s) | 447, 1215, 1329 |
| MaeI | CTAG | 3 cut(s) | 201, 267, 1601 |
| MaeII | ACGT | 8 cut(s) | 9, 48, 398, 684, 929, 1042, 2277, 2422 |
| MaeIII | GTNAC | 7 cut(s) | 508, 1396, 1423, 1764, 2101, 2265, 2418 |
| MalI | GATC | 8 cut(s) | 749, 829, 959, 1104, 1299, 1997, 2499, 2512 |
| MbiI | CCGCTC | 5 cut(s) | 1336, 1645, 1672, 1885, 2014 |
| MboI | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| MboII | GAAGA | 8 cut(s) | 947, 950, 1397, 1508, 1546, 1570, 1835, 2191 |
| MfeI | CAATTG | 1 cut(s) | 1716 |
| MhlI | GDGCHC | 4 cut(s) | 200, 416, 1525, 2212 |
| MlsI | TGGCCA | 2 cut(s) | 5, 605 |
| MluCI | AATT | 4 cut(s) | 551, 1120, 1716, 2171 |
| MluI | ACGCGT | 1 cut(s) | 1972 |
| MluNI | TGGCCA | 2 cut(s) | 5, 605 |
| Mly113I | GGCGCC | 2 cut(s) | 1583, 2244 |
| MlyI | GAGTC | 8 cut(s) | 77, 758, 1084, 1273, 1453, 1598, 2066, 2386 |
| MmeI | TCCRAC | 4 cut(s) | 895, 1965, 2391, 2504 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 605 |
| MroNI | GCCGGC | 1 cut(s) | 726 |
| MscI | TGGCCA | 2 cut(s) | 5, 605 |
| MseI | TTAA | 3 cut(s) | 381, 858, 2175 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1203, 1245 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 605 |
| MunI | CAATTG | 1 cut(s) | 1716 |
| Mva1269I | GAATGC | 1 cut(s) | 1942 |
| MvaI | CCWGG | 3 cut(s) | 160, 248, 1958 |
| MvnI | CGCG | 9 cut(s) | 187, 237, 948, 1080, 1705, 1802, 1926, 1974, 2519 |
| NaeI | GCCGGC | 1 cut(s) | 728 |
| NarI | GGCGCC | 2 cut(s) | 1583, 2244 |
| NciI | CCSGG | 9 cut(s) | 40, 297, 631, 1062, 1178, 2212, 2213, 2449, 2450 |
| NdeI | CATATG | 1 cut(s) | 1662 |
| NdeII | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| NgoMIV | GCCGGC | 1 cut(s) | 726 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 5 cut(s) | 610, 1138, 1772, 2230, 2320 |
| NmeAIII | GCCGAG | 5 cut(s) | 719, 1168, 1639, 2101, 2314 |
| NmuCI | GTSAC | 4 cut(s) | 1396, 1423, 2265, 2418 |
| NotI | GCGGCCGC | 1 cut(s) | 2136 |
| NruI | TCGCGA | 1 cut(s) | 1080 |
| NspI | RCATGY | 1 cut(s) | 2230 |
| OliI | CACNNNNGTG | 1 cut(s) | 1245 |
| PaeR7I | CTCGAG | 1 cut(s) | 2487 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PciI | ACATGT | 1 cut(s) | 2226 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 339 |
| PctI | GAATGC | 1 cut(s) | 1942 |
| PdiI | GCCGGC | 1 cut(s) | 728 |
| PfeI | GAWTC | 4 cut(s) | 35, 311, 529, 754 |
| PflFI | GACNNNGTC | 1 cut(s) | 2407 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| Ple19I | CGATCG | 1 cut(s) | 2513 |
| PleI | GAGTC | 8 cut(s) | 77, 758, 1083, 1273, 1452, 1598, 2065, 2386 |
| PluTI | GGCGCC | 2 cut(s) | 1586, 2247 |
| PmaCI | CACGTG | 1 cut(s) | 2423 |
| PmlI | CACGTG | 1 cut(s) | 2423 |
| PpsI | GAGTC | 8 cut(s) | 77, 758, 1083, 1273, 1452, 1598, 2065, 2386 |
| Ppu21I | YACGTR | 2 cut(s) | 685, 2423 |
| PpuMI | RGGWCCY | 4 cut(s) | 641, 786, 1358, 2382 |
| PscI | ACATGT | 1 cut(s) | 2226 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2312 |
| Psp124BI | GAGCTC | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 4 cut(s) | 641, 786, 1358, 2382 |
| Psp6I | CCWGG | 3 cut(s) | 158, 246, 1956 |
| PspCI | CACGTG | 1 cut(s) | 2423 |
| PspEI | GGTNACC | 1 cut(s) | 2101 |
| PspFI | CCCAGC | 9 cut(s) | 463, 1158, 1319, 1439, 1675, 2089, 2326, 2385, 2397 |
| PspGI | CCWGG | 3 cut(s) | 158, 246, 1956 |
| PspOMI | GGGCCC | 2 cut(s) | 1521, 2208 |
| PspPPI | RGGWCCY | 4 cut(s) | 641, 786, 1358, 2382 |
| PspXI | VCTCGAGB | 1 cut(s) | 2487 |
| PstI | CTGCAG | 2 cut(s) | 109, 2010 |
| PsyI | GACNNNGTC | 1 cut(s) | 2407 |
| PvuI | CGATCG | 1 cut(s) | 2513 |
| PvuII | CAGCTG | 1 cut(s) | 2330 |
| RruI | TCGCGA | 1 cut(s) | 1080 |
| RsaI | GTAC | 9 cut(s) | 294, 323, 665, 683, 818, 920, 1667, 2338, 2461 |
| RsaNI | GTAC | 9 cut(s) | 293, 322, 664, 682, 817, 919, 1666, 2337, 2460 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1203, 1245 |
| SacI | GAGCTC | 1 cut(s) | 200 |
| SacII | CCGCGG | 1 cut(s) | 1927 |
| SalI | GTCGAC | 2 cut(s) | 344, 1025 |
| SaqAI | TTAA | 3 cut(s) | 381, 858, 2175 |
| Sau3AI | GATC | 8 cut(s) | 747, 827, 957, 1102, 1297, 1995, 2497, 2510 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 8 cut(s) | 77, 758, 1084, 1273, 1453, 1598, 2066, 2386 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 4 cut(s) | 200, 416, 1525, 2212 |
| SfaNI | GCATC | 3 cut(s) | 447, 1215, 1329 |
| SfcI | CTRYAG | 3 cut(s) | 105, 2006, 2463 |
| SfoI | GGCGCC | 2 cut(s) | 1584, 2245 |
| Sfr274I | CTCGAG | 1 cut(s) | 2487 |
| Sfr303I | CCGCGG | 1 cut(s) | 1927 |
| SgrBI | CCGCGG | 1 cut(s) | 1927 |
| SgrDI | CGTCGACG | 1 cut(s) | 344 |
| SinI | GGWCC | 5 cut(s) | 641, 786, 1358, 2382, 2493 |
| SlaI | CTCGAG | 1 cut(s) | 2487 |
| SmaI | CCCGGG | 2 cut(s) | 2213, 2450 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1203, 1245 |
| SmlI | CTYRAG | 2 cut(s) | 718, 2487 |
| SmoI | CTYRAG | 2 cut(s) | 718, 2487 |
| SrfI | GCCCGGGC | 1 cut(s) | 2213 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 4 cut(s) | 551, 1120, 1716, 2171 |
| SspDI | GGCGCC | 2 cut(s) | 1582, 2243 |
| SspMI | CTAG | 3 cut(s) | 201, 267, 1601 |
| SstI | GAGCTC | 1 cut(s) | 200 |
| StyI | CCWWGG | 2 cut(s) | 502, 1243 |
| TaaI | ACNGT | 7 cut(s) | 439, 649, 809, 1168, 1267, 1288, 1477 |
| TaiI | ACGT | 8 cut(s) | 12, 51, 401, 687, 932, 1045, 2280, 2425 |
| TaqII | GACCGA | 3 cut(s) | 557, 2204, 2503 |
| TasI | AATT | 4 cut(s) | 551, 1120, 1716, 2171 |
| TatI | WGTACW | 1 cut(s) | 663 |
| TfiI | GAWTC | 4 cut(s) | 35, 311, 529, 754 |
| Tru1I | TTAA | 3 cut(s) | 381, 858, 2175 |
| Tru9I | TTAA | 3 cut(s) | 381, 858, 2175 |
| TscAI | CASTG | 6 cut(s) | 34, 123, 444, 519, 1422, 2190 |
| TseFI | GTSAC | 4 cut(s) | 1396, 1423, 2265, 2418 |
| Tsp45I | GTSAC | 4 cut(s) | 1396, 1423, 2265, 2418 |
| TspDTI | ATGAA | 5 cut(s) | 404, 623, 1649, 1983, 2096 |
| TspGWI | ACGGA | 2 cut(s) | 1649, 1877 |
| TspMI | CCCGGG | 2 cut(s) | 2211, 2448 |
| TspRI | CASTG | 6 cut(s) | 34, 123, 444, 519, 1422, 2190 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2407 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 588 |
| VpaK11BI | GGWCC | 5 cut(s) | 641, 786, 1358, 2382, 2493 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 879, 1247 |
| XapI | RAATTY | 2 cut(s) | 551, 2171 |
| XceI | RCATGY | 1 cut(s) | 2230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1241 |
| XhoI | CTCGAG | 1 cut(s) | 2487 |
| XmaI | CCCGGG | 2 cut(s) | 2211, 2448 |
| XmiI | GTMKAC | 2 cut(s) | 345, 1026 |
| XspI | CTAG | 3 cut(s) | 201, 267, 1601 |