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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 314 |
| Acc36I | ACCTGC | 1 cut(s) | 314 |
| AccB1I | GGYRCC | 2 cut(s) | 326, 362 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 372 |
| AccBSI | CCGCTC | 1 cut(s) | 145 |
| AccI | GTMKAC | 1 cut(s) | 111 |
| AciI | CCGC | 7 cut(s) | 107, 145, 215, 258, 280, 314, 401 |
| AclWI | GGATC | 1 cut(s) | 232 |
| AcoI | YGGCCR | 4 cut(s) | 129, 216, 267, 333 |
| AcsI | RAATTY | 1 cut(s) | 91 |
| AcyI | GRCGYC | 3 cut(s) | 114, 363, 383 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 37, 60, 144, 208, 247, 372 |
| AjnI | CCWGG | 3 cut(s) | 54, 150, 330 |
| AluBI | AGCT | 2 cut(s) | 10, 127 |
| AluI | AGCT | 2 cut(s) | 10, 127 |
| AlwI | GGATC | 1 cut(s) | 232 |
| AoxI | GGCC | 6 cut(s) | 28, 51, 129, 216, 267, 333 |
| ApeKI | GCWGC | 3 cut(s) | 244, 349, 352 |
| ApoI | RAATTY | 1 cut(s) | 91 |
| AspLEI | GCGC | 2 cut(s) | 304, 365 |
| AspS9I | GGNCC | 2 cut(s) | 52, 148 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| AvaII | GGWCC | 1 cut(s) | 148 |
| BaeGI | GKGCMC | 1 cut(s) | 331 |
| BalI | TGGCCA | 1 cut(s) | 335 |
| BanI | GGYRCC | 2 cut(s) | 326, 362 |
| BbvI | GCAGC | 3 cut(s) | 256, 336, 364 |
| BceAI | ACGGC | 1 cut(s) | 116 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 86, 120 |
| BciT130I | CCWGG | 3 cut(s) | 56, 152, 332 |
| BfaI | CTAG | 1 cut(s) | 261 |
| BfmI | CTRYAG | 3 cut(s) | 32, 242, 350 |
| BfoI | RGCGCY | 2 cut(s) | 305, 366 |
| BfuAI | ACCTGC | 1 cut(s) | 314 |
| BisI | GCNGC | 8 cut(s) | 216, 245, 258, 281, 315, 350, 353, 401 |
| BlsI | GCNGC | 8 cut(s) | 217, 246, 259, 282, 316, 351, 354, 402 |
| Bme1390I | CCNGG | 3 cut(s) | 56, 152, 332 |
| Bme18I | GGWCC | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 2 cut(s) | 52, 148 |
| BmiI | GGNNCC | 3 cut(s) | 149, 328, 364 |
| BmrFI | CCNGG | 3 cut(s) | 56, 152, 332 |
| BmsI | GCATC | 3 cut(s) | 71, 94, 378 |
| BpmI | CTGGAG | 1 cut(s) | 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 3 cut(s) | 114, 363, 383 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 270, 330 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 37, 60, 144, 208, 247, 372 |
| Bse118I | RCCGGY | 1 cut(s) | 391 |
| BseBI | CCWGG | 3 cut(s) | 56, 152, 332 |
| BseDI | CCNNGG | 3 cut(s) | 54, 270, 330 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 37, 60, 144, 208, 247, 372 |
| BseRI | GAGGAG | 1 cut(s) | 32 |
| BseSI | GKGCMC | 1 cut(s) | 331 |
| BseXI | GCAGC | 3 cut(s) | 256, 336, 364 |
| Bsh1285I | CGRYCG | 1 cut(s) | 396 |
| BshFI | GGCC | 6 cut(s) | 30, 53, 131, 218, 269, 335 |
| BshNI | GGYRCC | 2 cut(s) | 326, 362 |
| BsiEI | CGRYCG | 1 cut(s) | 396 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslFI | GGGAC | 2 cut(s) | 161, 178 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 37, 60, 144, 208, 247, 372 |
| BsmFI | GGGAC | 2 cut(s) | 161, 178 |
| BsnI | GGCC | 6 cut(s) | 30, 53, 131, 218, 269, 335 |
| Bsp1286I | GDGCHC | 1 cut(s) | 331 |
| Bsp143I | GATC | 2 cut(s) | 205, 237 |
| BspACI | CCGC | 7 cut(s) | 107, 145, 215, 258, 280, 314, 401 |
| BspANI | GGCC | 6 cut(s) | 30, 53, 131, 218, 269, 335 |
| BspLI | GGNNCC | 3 cut(s) | 149, 328, 364 |
| BspMAI | CTGCAG | 2 cut(s) | 246, 354 |
| BspMI | ACCTGC | 1 cut(s) | 314 |
| BspPI | GGATC | 1 cut(s) | 232 |
| BspT107I | GGYRCC | 2 cut(s) | 326, 362 |
| BsrBI | CCGCTC | 1 cut(s) | 145 |
| BsrFI | RCCGGY | 1 cut(s) | 391 |
| BssAI | RCCGGY | 1 cut(s) | 391 |
| BssECI | CCNNGG | 3 cut(s) | 54, 270, 330 |
| BssMI | GATC | 2 cut(s) | 205, 237 |
| BssNI | GRCGYC | 3 cut(s) | 114, 363, 383 |
| Bst2UI | CCWGG | 3 cut(s) | 56, 152, 332 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstACI | GRCGYC | 3 cut(s) | 114, 363, 383 |
| BstC8I | GCNNGC | 3 cut(s) | 125, 129, 267 |
| BstDEI | CTNAG | 1 cut(s) | 11 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstH2I | RGCGCY | 2 cut(s) | 305, 366 |
| BstHHI | GCGC | 2 cut(s) | 304, 365 |
| BstKTI | GATC | 2 cut(s) | 208, 240 |
| BstMBI | GATC | 2 cut(s) | 205, 237 |
| BstMCI | CGRYCG | 1 cut(s) | 396 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 266, 320, 397 |
| BstNI | CCWGG | 3 cut(s) | 56, 152, 332 |
| BstSCI | CCNGG | 3 cut(s) | 54, 150, 330 |
| BstSFI | CTRYAG | 3 cut(s) | 32, 242, 350 |
| BstSLI | GKGCMC | 1 cut(s) | 331 |
| BstV1I | GCAGC | 3 cut(s) | 256, 336, 364 |
| BstX2I | RGATCY | 1 cut(s) | 237 |
| BstYI | RGATCY | 1 cut(s) | 237 |
| BsuRI | GGCC | 6 cut(s) | 30, 53, 131, 218, 269, 335 |
| BtgZI | GCGATG | 1 cut(s) | 94 |
| BveI | ACCTGC | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 3 cut(s) | 125, 129, 267 |
| CfoI | GCGC | 2 cut(s) | 304, 365 |
| Cfr10I | RCCGGY | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 2 cut(s) | 52, 148 |
| CseI | GACGC | 2 cut(s) | 122, 372 |
| DdeI | CTNAG | 1 cut(s) | 11 |
| DinI | GGCGCC | 1 cut(s) | 364 |
| DpnI | GATC | 2 cut(s) | 207, 239 |
| DpnII | GATC | 2 cut(s) | 205, 237 |
| EaeI | YGGCCR | 4 cut(s) | 129, 216, 267, 333 |
| Eco147I | AGGCCT | 1 cut(s) | 30 |
| Eco47I | GGWCC | 1 cut(s) | 148 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 1 cut(s) | 148 |
| EcoRII | CCWGG | 3 cut(s) | 54, 150, 330 |
| EgeI | GGCGCC | 1 cut(s) | 364 |
| EheI | GGCGCC | 1 cut(s) | 364 |
| FaiI | YATR | 2 cut(s) | 191, 294 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 68, 100 |
| FaqI | GGGAC | 2 cut(s) | 161, 178 |
| FauI | CCCGC | 1 cut(s) | 138 |
| FblI | GTMKAC | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 8 cut(s) | 216, 245, 258, 281, 315, 350, 353, 401 |
| Fsp4HI | GCNGC | 8 cut(s) | 216, 245, 258, 281, 315, 350, 353, 401 |
| FspBI | CTAG | 1 cut(s) | 261 |
| GlaI | GCGC | 2 cut(s) | 303, 364 |
| GluI | GCNGC | 8 cut(s) | 216, 245, 258, 281, 315, 350, 353, 401 |
| GsuI | CTGGAG | 1 cut(s) | 305 |
| HaeII | RGCGCY | 2 cut(s) | 305, 366 |
| HaeIII | GGCC | 6 cut(s) | 30, 53, 131, 218, 269, 335 |
| HapII | CCGG | 1 cut(s) | 392 |
| HgaI | GACGC | 2 cut(s) | 122, 372 |
| HhaI | GCGC | 2 cut(s) | 304, 365 |
| Hin1I | GRCGYC | 3 cut(s) | 114, 363, 383 |
| Hin6I | GCGC | 2 cut(s) | 302, 363 |
| HinP1I | GCGC | 2 cut(s) | 302, 363 |
| HinfI | GANTC | 1 cut(s) | 251 |
| HpaII | CCGG | 1 cut(s) | 392 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 112 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy8I | GTNNAC | 1 cut(s) | 112 |
| Hpy99I | CGWCG | 2 cut(s) | 137, 388 |
| HpyAV | CCTTC | 4 cut(s) | 292, 313, 352, 373 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 244, 352 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 266, 320, 397 |
| HpyF3I | CTNAG | 1 cut(s) | 11 |
| Hsp92I | GRCGYC | 3 cut(s) | 114, 363, 383 |
| HspAI | GCGC | 2 cut(s) | 302, 363 |
| KasI | GGCGCC | 1 cut(s) | 362 |
| Kzo9I | GATC | 2 cut(s) | 205, 237 |
| LmnI | GCTCC | 3 cut(s) | 7, 181, 204 |
| Lsp1109I | GCAGC | 3 cut(s) | 256, 336, 364 |
| LweI | GCATC | 3 cut(s) | 71, 94, 378 |
| MaeI | CTAG | 1 cut(s) | 261 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MalI | GATC | 2 cut(s) | 207, 239 |
| MbiI | CCGCTC | 1 cut(s) | 145 |
| MboI | GATC | 2 cut(s) | 205, 237 |
| MflI | RGATCY | 1 cut(s) | 237 |
| MhlI | GDGCHC | 1 cut(s) | 331 |
| MlsI | TGGCCA | 1 cut(s) | 335 |
| MluCI | AATT | 2 cut(s) | 91, 167 |
| MluNI | TGGCCA | 1 cut(s) | 335 |
| Mly113I | GGCGCC | 1 cut(s) | 363 |
| MlyI | GAGTC | 1 cut(s) | 260 |
| MmeI | TCCRAC | 2 cut(s) | 120, 159 |
| MnlI | CCTC | 6 cut(s) | 10, 13, 30, 43, 265, 280 |
| Mox20I | TGGCCA | 1 cut(s) | 335 |
| MscI | TGGCCA | 1 cut(s) | 335 |
| MseI | TTAA | 2 cut(s) | 75, 276 |
| Msp20I | TGGCCA | 1 cut(s) | 335 |
| MspI | CCGG | 1 cut(s) | 392 |
| MspR9I | CCNGG | 3 cut(s) | 56, 152, 332 |
| MvaI | CCWGG | 3 cut(s) | 56, 152, 332 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 266, 320, 397 |
| NarI | GGCGCC | 1 cut(s) | 363 |
| NdeII | GATC | 2 cut(s) | 205, 237 |
| NlaIV | GGNNCC | 3 cut(s) | 149, 328, 364 |
| NmeAIII | GCCGAG | 1 cut(s) | 295 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| PaqCI | CACCTGC | 1 cut(s) | 314 |
| PceI | AGGCCT | 1 cut(s) | 30 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 372 |
| PkrI | GCNGC | 8 cut(s) | 217, 246, 259, 282, 316, 351, 354, 402 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PluTI | GGCGCC | 1 cut(s) | 366 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| PpuMI | RGGWCCY | 1 cut(s) | 148 |
| Psp5II | RGGWCCY | 1 cut(s) | 148 |
| Psp6I | CCWGG | 3 cut(s) | 54, 150, 330 |
| PspGI | CCWGG | 3 cut(s) | 54, 150, 330 |
| PspN4I | GGNNCC | 3 cut(s) | 149, 328, 364 |
| PspPI | GGNCC | 2 cut(s) | 52, 148 |
| PspPPI | RGGWCCY | 1 cut(s) | 148 |
| PstI | CTGCAG | 2 cut(s) | 246, 354 |
| PsuI | RGATCY | 1 cut(s) | 237 |
| SaqAI | TTAA | 2 cut(s) | 75, 276 |
| SatI | GCNGC | 8 cut(s) | 216, 245, 258, 281, 315, 350, 353, 401 |
| Sau3AI | GATC | 2 cut(s) | 205, 237 |
| Sau96I | GGNCC | 2 cut(s) | 52, 148 |
| SchI | GAGTC | 1 cut(s) | 260 |
| ScrFI | CCNGG | 3 cut(s) | 56, 152, 332 |
| SduI | GDGCHC | 1 cut(s) | 331 |
| SetI | ASST | 8 cut(s) | 12, 24, 65, 129, 153, 234, 276, 328 |
| SfaNI | GCATC | 3 cut(s) | 71, 94, 378 |
| SfcI | CTRYAG | 3 cut(s) | 32, 242, 350 |
| SfoI | GGCGCC | 1 cut(s) | 364 |
| SinI | GGWCC | 1 cut(s) | 148 |
| Sse9I | AATT | 2 cut(s) | 91, 167 |
| SseBI | AGGCCT | 1 cut(s) | 30 |
| SsiI | CCGC | 7 cut(s) | 107, 145, 215, 258, 280, 314, 401 |
| SspDI | GGCGCC | 1 cut(s) | 362 |
| SspMI | CTAG | 1 cut(s) | 261 |
| StuI | AGGCCT | 1 cut(s) | 30 |
| StyD4I | CCNGG | 3 cut(s) | 54, 150, 330 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaqI | TCGA | 1 cut(s) | 386 |
| TasI | AATT | 2 cut(s) | 91, 167 |
| TauI | GCSGC | 5 cut(s) | 218, 260, 283, 317, 403 |
| Tru1I | TTAA | 2 cut(s) | 75, 276 |
| Tru9I | TTAA | 2 cut(s) | 75, 276 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| TseI | GCWGC | 3 cut(s) | 244, 349, 352 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspGWI | ACGGA | 1 cut(s) | 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 372 |
| VpaK11BI | GGWCC | 1 cut(s) | 148 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 91 |
| XmiI | GTMKAC | 1 cut(s) | 111 |
| XspI | CTAG | 1 cut(s) | 261 |