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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 425 |
| AclWI | GGATC | 1 cut(s) | 658 |
| AcuI | CTGAAG | 1 cut(s) | 594 |
| AdeI | CACNNNGTG | 1 cut(s) | 98 |
| AfaI | GTAC | 2 cut(s) | 443, 789 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 636 |
| AgsI | TTSAA | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 757 |
| AluBI | AGCT | 5 cut(s) | 34, 343, 499, 572, 780 |
| AluI | AGCT | 5 cut(s) | 34, 343, 499, 572, 780 |
| Alw26I | GTCTC | 8 cut(s) | 36, 53, 96, 113, 156, 276, 293, 587 |
| AlwI | GGATC | 1 cut(s) | 658 |
| AoxI | GGCC | 2 cut(s) | 417, 675 |
| ApeKI | GCWGC | 4 cut(s) | 343, 533, 595, 777 |
| AspLEI | GCGC | 1 cut(s) | 154 |
| AspS9I | GGNCC | 1 cut(s) | 639 |
| AsuC2I | CCSGG | 1 cut(s) | 643 |
| AsuHPI | GGTGA | 2 cut(s) | 349, 526 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 639 |
| BbsI | GAAGAC | 1 cut(s) | 228 |
| BbvCI | CCTCAGC | 1 cut(s) | 330 |
| BbvI | GCAGC | 4 cut(s) | 330, 520, 607, 789 |
| BccI | CCATC | 2 cut(s) | 638, 667 |
| BceAI | ACGGC | 1 cut(s) | 723 |
| BciT130I | CCWGG | 1 cut(s) | 759 |
| BclI | TGATCA | 3 cut(s) | 516, 735, 766 |
| BcnI | CCSGG | 1 cut(s) | 643 |
| BcoDI | GTCTC | 8 cut(s) | 36, 53, 96, 113, 156, 276, 293, 587 |
| BfaI | CTAG | 4 cut(s) | 21, 81, 201, 261 |
| BisI | GCNGC | 6 cut(s) | 344, 420, 423, 534, 596, 778 |
| BlpI | GCTNAGC | 3 cut(s) | 35, 155, 215 |
| BlsI | GCNGC | 6 cut(s) | 345, 421, 424, 535, 597, 779 |
| Bme1390I | CCNGG | 2 cut(s) | 643, 759 |
| Bme18I | GGWCC | 1 cut(s) | 639 |
| BmgT120I | GGNCC | 1 cut(s) | 639 |
| BmrFI | CCNGG | 2 cut(s) | 643, 759 |
| BmrI | ACTGGG | 1 cut(s) | 532 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 1 cut(s) | 532 |
| BpiI | GAAGAC | 1 cut(s) | 228 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 33, 65, 93, 125, 273, 305 |
| Bpu10I | CCTNAGC | 2 cut(s) | 330, 507 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 35, 155, 215 |
| BpuEI | CTTGAG | 1 cut(s) | 350 |
| BpuMI | CCSGG | 1 cut(s) | 643 |
| BsaI | GGTCTC | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 4 cut(s) | 384, 642, 757, 829 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 636 |
| Bse1I | ACTGG | 3 cut(s) | 527, 665, 804 |
| BseBI | CCWGG | 1 cut(s) | 759 |
| BseDI | CCNNGG | 4 cut(s) | 384, 642, 757, 829 |
| BseGI | GGATG | 2 cut(s) | 454, 630 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 636 |
| BseMII | CTCAG | 3 cut(s) | 321, 668, 795 |
| BseNI | ACTGG | 3 cut(s) | 527, 665, 804 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseXI | GCAGC | 4 cut(s) | 330, 520, 607, 789 |
| BshFI | GGCC | 2 cut(s) | 419, 677 |
| BsiSI | CCGG | 1 cut(s) | 642 |
| BslFI | GGGAC | 1 cut(s) | 742 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 636 |
| BsmAI | GTCTC | 8 cut(s) | 36, 53, 96, 113, 156, 276, 293, 587 |
| BsmFI | GGGAC | 1 cut(s) | 742 |
| BsnI | GGCC | 2 cut(s) | 419, 677 |
| Bso31I | GGTCTC | 1 cut(s) | 587 |
| Bsp143I | GATC | 4 cut(s) | 516, 650, 735, 766 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 35, 155, 215 |
| BspANI | GGCC | 2 cut(s) | 419, 677 |
| BspCNI | CTCAG | 3 cut(s) | 322, 667, 794 |
| BspHI | TCATGA | 1 cut(s) | 702 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspPI | GGATC | 1 cut(s) | 658 |
| BspTNI | GGTCTC | 1 cut(s) | 587 |
| BsrBI | CCGCTC | 1 cut(s) | 425 |
| BsrI | ACTGG | 3 cut(s) | 527, 665, 804 |
| BssECI | CCNNGG | 4 cut(s) | 384, 642, 757, 829 |
| BssMI | GATC | 4 cut(s) | 516, 650, 735, 766 |
| BssT1I | CCWWGG | 2 cut(s) | 384, 829 |
| Bst2UI | CCWGG | 1 cut(s) | 759 |
| Bst4CI | ACNGT | 4 cut(s) | 47, 107, 167, 287 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 429 |
| BstC8I | GCNNGC | 7 cut(s) | 55, 115, 175, 262, 295, 361, 427 |
| BstF5I | GGATG | 2 cut(s) | 454, 630 |
| BstHHI | GCGC | 1 cut(s) | 154 |
| BstKTI | GATC | 4 cut(s) | 519, 653, 738, 769 |
| BstMAI | GTCTC | 8 cut(s) | 36, 53, 96, 113, 156, 276, 293, 587 |
| BstMBI | GATC | 4 cut(s) | 516, 650, 735, 766 |
| BstNI | CCWGG | 1 cut(s) | 759 |
| BstSCI | CCNGG | 2 cut(s) | 641, 757 |
| BstV1I | GCAGC | 4 cut(s) | 330, 520, 607, 789 |
| BstV2I | GAAGAC | 1 cut(s) | 228 |
| BstX2I | RGATCY | 1 cut(s) | 650 |
| BstYI | RGATCY | 1 cut(s) | 650 |
| BsuRI | GGCC | 2 cut(s) | 419, 677 |
| BtgZI | GCGATG | 1 cut(s) | 636 |
| BtsCI | GGATG | 2 cut(s) | 454, 630 |
| BtsIMutI | CAGTG | 4 cut(s) | 477, 672, 789, 797 |
| Cac8I | GCNNGC | 7 cut(s) | 55, 115, 175, 262, 295, 361, 427 |
| CciI | TCATGA | 1 cut(s) | 702 |
| CfoI | GCGC | 1 cut(s) | 154 |
| Cfr13I | GGNCC | 1 cut(s) | 639 |
| CpoI | CGGWCCG | 1 cut(s) | 639 |
| CseI | GACGC | 1 cut(s) | 328 |
| Csp6I | GTAC | 2 cut(s) | 442, 788 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 472, 507 |
| CspI | CGGWCCG | 1 cut(s) | 639 |
| CviAII | CATG | 3 cut(s) | 692, 703, 719 |
| CviQI | GTAC | 2 cut(s) | 442, 788 |
| DpnI | GATC | 4 cut(s) | 518, 652, 737, 768 |
| DpnII | GATC | 4 cut(s) | 516, 650, 735, 766 |
| DraIII | CACNNNGTG | 1 cut(s) | 98 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 429 |
| EarI | CTCTTC | 2 cut(s) | 345, 429 |
| Eco130I | CCWWGG | 2 cut(s) | 384, 829 |
| Eco31I | GGTCTC | 1 cut(s) | 587 |
| Eco47I | GGWCC | 1 cut(s) | 639 |
| Eco57I | CTGAAG | 1 cut(s) | 594 |
| EcoRII | CCWGG | 1 cut(s) | 757 |
| EcoT14I | CCWWGG | 2 cut(s) | 384, 829 |
| ErhI | CCWWGG | 2 cut(s) | 384, 829 |
| FaeI | CATG | 3 cut(s) | 695, 706, 722 |
| FaiI | YATR | 6 cut(s) | 307, 540, 542, 693, 704, 720 |
| FaqI | GGGAC | 1 cut(s) | 742 |
| FatI | CATG | 3 cut(s) | 691, 702, 718 |
| FauNDI | CATATG | 1 cut(s) | 540 |
| FbaI | TGATCA | 3 cut(s) | 516, 735, 766 |
| Fnu4HI | GCNGC | 6 cut(s) | 344, 420, 423, 534, 596, 778 |
| FokI | GGATG | 2 cut(s) | 461, 617 |
| Fsp4HI | GCNGC | 6 cut(s) | 344, 420, 423, 534, 596, 778 |
| FspBI | CTAG | 4 cut(s) | 21, 81, 201, 261 |
| GlaI | GCGC | 1 cut(s) | 153 |
| GluI | GCNGC | 6 cut(s) | 344, 420, 423, 534, 596, 778 |
| HaeIII | GGCC | 2 cut(s) | 419, 677 |
| HapII | CCGG | 1 cut(s) | 642 |
| HgaI | GACGC | 1 cut(s) | 328 |
| HhaI | GCGC | 1 cut(s) | 154 |
| Hin1II | CATG | 3 cut(s) | 695, 706, 722 |
| Hin6I | GCGC | 1 cut(s) | 152 |
| HinP1I | GCGC | 1 cut(s) | 152 |
| HincII | GTYRAC | 1 cut(s) | 456 |
| HindII | GTYRAC | 1 cut(s) | 456 |
| HinfI | GANTC | 5 cut(s) | 556, 587, 626, 699, 836 |
| HpaII | CCGG | 1 cut(s) | 642 |
| HphI | GGTGA | 2 cut(s) | 349, 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 456 |
| Hpy188I | TCNGA | 5 cut(s) | 318, 433, 682, 766, 771 |
| Hpy188III | TCNNGA | 2 cut(s) | 584, 703 |
| Hpy8I | GTNNAC | 1 cut(s) | 456 |
| Hpy99I | CGWCG | 1 cut(s) | 595 |
| HpyAV | CCTTC | 5 cut(s) | 409, 454, 523, 569, 641 |
| HpyCH4III | ACNGT | 4 cut(s) | 47, 107, 167, 287 |
| HpyCH4V | TGCA | 5 cut(s) | 57, 92, 117, 177, 346 |
| Hsp92II | CATG | 3 cut(s) | 695, 706, 722 |
| HspAI | GCGC | 1 cut(s) | 152 |
| Ksp22I | TGATCA | 3 cut(s) | 516, 735, 766 |
| Kzo9I | GATC | 4 cut(s) | 516, 650, 735, 766 |
| LmnI | GCTCC | 1 cut(s) | 550 |
| LpnPI | CCDG | 8 cut(s) | 383, 508, 647, 655, 678, 744, 771, 785 |
| Lsp1109I | GCAGC | 4 cut(s) | 330, 520, 607, 789 |
| MaeI | CTAG | 4 cut(s) | 21, 81, 201, 261 |
| MaeIII | GTNAC | 4 cut(s) | 208, 667, 809, 817 |
| MalI | GATC | 4 cut(s) | 518, 652, 737, 768 |
| MbiI | CCGCTC | 1 cut(s) | 425 |
| MboI | GATC | 4 cut(s) | 516, 650, 735, 766 |
| MboII | GAAGA | 3 cut(s) | 233, 362, 446 |
| MflI | RGATCY | 1 cut(s) | 650 |
| MluCI | AATT | 1 cut(s) | 374 |
| MlyI | GAGTC | 3 cut(s) | 581, 635, 693 |
| MmeI | TCCRAC | 1 cut(s) | 705 |
| MnlI | CCTC | 9 cut(s) | 77, 119, 179, 239, 325, 374, 430, 572, 688 |
| MspA1I | CMGCKG | 2 cut(s) | 572, 637 |
| MspI | CCGG | 1 cut(s) | 642 |
| MspR9I | CCNGG | 2 cut(s) | 643, 759 |
| MvaI | CCWGG | 1 cut(s) | 759 |
| NciI | CCSGG | 1 cut(s) | 643 |
| NdeI | CATATG | 1 cut(s) | 540 |
| NdeII | GATC | 4 cut(s) | 516, 650, 735, 766 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| NlaIII | CATG | 3 cut(s) | 695, 706, 722 |
| NmuCI | GTSAC | 2 cut(s) | 667, 809 |
| PagI | TCATGA | 1 cut(s) | 702 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 668 |
| PfeI | GAWTC | 1 cut(s) | 556 |
| PkrI | GCNGC | 6 cut(s) | 345, 421, 424, 535, 597, 779 |
| PleI | GAGTC | 3 cut(s) | 581, 634, 693 |
| PpsI | GAGTC | 3 cut(s) | 581, 634, 693 |
| Psp6I | CCWGG | 1 cut(s) | 757 |
| PspGI | CCWGG | 1 cut(s) | 757 |
| PspPI | GGNCC | 1 cut(s) | 639 |
| PsuI | RGATCY | 1 cut(s) | 650 |
| PvuII | CAGCTG | 1 cut(s) | 572 |
| RsaI | GTAC | 2 cut(s) | 443, 789 |
| RsaNI | GTAC | 2 cut(s) | 442, 788 |
| Rsr2I | CGGWCCG | 1 cut(s) | 639 |
| RsrII | CGGWCCG | 1 cut(s) | 639 |
| SatI | GCNGC | 6 cut(s) | 344, 420, 423, 534, 596, 778 |
| Sau3AI | GATC | 4 cut(s) | 516, 650, 735, 766 |
| Sau96I | GGNCC | 1 cut(s) | 639 |
| SchI | GAGTC | 3 cut(s) | 581, 635, 693 |
| ScrFI | CCNGG | 2 cut(s) | 643, 759 |
| SetI | ASST | 9 cut(s) | 36, 88, 336, 345, 465, 501, 574, 583, 782 |
| SinI | GGWCC | 1 cut(s) | 639 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 1 cut(s) | 374 |
| SspMI | CTAG | 4 cut(s) | 21, 81, 201, 261 |
| StyD4I | CCNGG | 2 cut(s) | 641, 757 |
| StyI | CCWWGG | 2 cut(s) | 384, 829 |
| TaaI | ACNGT | 4 cut(s) | 47, 107, 167, 287 |
| TaqI | TCGA | 2 cut(s) | 585, 697 |
| TasI | AATT | 1 cut(s) | 374 |
| TatI | WGTACW | 1 cut(s) | 441 |
| TauI | GCSGC | 2 cut(s) | 422, 425 |
| TfiI | GAWTC | 1 cut(s) | 556 |
| TscAI | CASTG | 4 cut(s) | 477, 672, 789, 804 |
| TseFI | GTSAC | 2 cut(s) | 667, 809 |
| TseI | GCWGC | 4 cut(s) | 343, 533, 595, 777 |
| Tsp45I | GTSAC | 2 cut(s) | 667, 809 |
| TspDTI | ATGAA | 4 cut(s) | 17, 77, 557, 680 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 4 cut(s) | 477, 672, 789, 804 |
| VpaK11BI | GGWCC | 1 cut(s) | 639 |
| XspI | CTAG | 4 cut(s) | 21, 81, 201, 261 |