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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 895 |
| Acc36I | ACCTGC | 1 cut(s) | 895 |
| Acc65I | GGTACC | 1 cut(s) | 1748 |
| AccB1I | GGYRCC | 6 cut(s) | 637, 742, 1499, 1535, 1625, 1748 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 1545 |
| AccBSI | CCGCTC | 5 cut(s) | 1048, 1075, 1243, 1264, 1632 |
| AccII | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| AclWI | GGATC | 4 cut(s) | 1254, 1330, 1356, 1759 |
| AcoI | YGGCCR | 2 cut(s) | 699, 1725 |
| AcsI | RAATTY | 2 cut(s) | 1379, 1704 |
| AcyI | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| AfaI | GTAC | 4 cut(s) | 561, 841, 1466, 1750 |
| AflII | CTTAAG | 1 cut(s) | 1250 |
| AflIII | ACRYGT | 2 cut(s) | 48, 610 |
| AgsI | TTSAA | 6 cut(s) | 485, 511, 669, 1144, 1385, 1450 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 5 cut(s) | 317, 409, 501, 677, 902 |
| AluBI | AGCT | 9 cut(s) | 371, 806, 1162, 1276, 1292, 1309, 1372, 1419, 1619 |
| AluI | AGCT | 9 cut(s) | 371, 806, 1162, 1276, 1292, 1309, 1372, 1419, 1619 |
| Alw21I | GWGCWC | 1 cut(s) | 1601 |
| Alw26I | GTCTC | 4 cut(s) | 678, 934, 1133, 1163 |
| AlwI | GGATC | 4 cut(s) | 1254, 1330, 1356, 1759 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 887 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 706 |
| AoxI | GGCC | 5 cut(s) | 542, 699, 1320, 1428, 1725 |
| ApeKI | GCWGC | 6 cut(s) | 371, 973, 1342, 1419, 1505, 1841 |
| ApoI | RAATTY | 2 cut(s) | 1379, 1704 |
| Asp718I | GGTACC | 1 cut(s) | 1748 |
| AspLEI | GCGC | 2 cut(s) | 1182, 1538 |
| AspS9I | GGNCC | 6 cut(s) | 359, 542, 906, 1101, 1303, 1572 |
| AsuC2I | CCSGG | 1 cut(s) | 1807 |
| AsuHPI | GGTGA | 7 cut(s) | 430, 780, 976, 1133, 1327, 1768, 1841 |
| AsuNHI | GCTAGC | 2 cut(s) | 247, 1309 |
| AvaI | CYCGRG | 2 cut(s) | 22, 706 |
| AvaII | GGWCC | 5 cut(s) | 359, 906, 1101, 1303, 1572 |
| AxyI | CCTNAGG | 1 cut(s) | 1110 |
| BaeGI | GKGCMC | 3 cut(s) | 642, 745, 1630 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1740, 1773 |
| BalI | TGGCCA | 1 cut(s) | 701 |
| BanI | GGYRCC | 6 cut(s) | 637, 742, 1499, 1535, 1625, 1748 |
| BauI | CACGAG | 1 cut(s) | 1043 |
| BbsI | GAAGAC | 1 cut(s) | 391 |
| Bbv12I | GWGCWC | 1 cut(s) | 1601 |
| BbvCI | CCTCAGC | 1 cut(s) | 1620 |
| BbvI | GCAGC | 6 cut(s) | 358, 985, 1354, 1406, 1492, 1828 |
| BccI | CCATC | 5 cut(s) | 103, 731, 1091, 1244, 1474 |
| BceAI | ACGGC | 1 cut(s) | 349 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1823, 1857 |
| BciT130I | CCWGG | 5 cut(s) | 319, 411, 503, 679, 904 |
| BclI | TGATCA | 1 cut(s) | 1039 |
| BcnI | CCSGG | 1 cut(s) | 1807 |
| BcoDI | GTCTC | 4 cut(s) | 678, 934, 1133, 1163 |
| BfaI | CTAG | 9 cut(s) | 6, 131, 201, 248, 267, 807, 1208, 1310, 1794 |
| BfmI | CTRYAG | 5 cut(s) | 105, 146, 339, 888, 1340 |
| BfoI | RGCGCY | 2 cut(s) | 1183, 1539 |
| BfrI | CTTAAG | 1 cut(s) | 1250 |
| BfuAI | ACCTGC | 1 cut(s) | 895 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 411 |
| BglII | AGATCT | 1 cut(s) | 18 |
| BlpI | GCTNAGC | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 6 cut(s) | 319, 411, 503, 679, 904, 1807 |
| Bme18I | GGWCC | 5 cut(s) | 359, 906, 1101, 1303, 1572 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 706 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 6 cut(s) | 359, 542, 906, 1101, 1303, 1572 |
| BmrFI | CCNGG | 6 cut(s) | 319, 411, 503, 679, 904, 1807 |
| BmsI | GCATC | 1 cut(s) | 1201 |
| BmtI | GCTAGC | 2 cut(s) | 251, 1313 |
| BpiI | GAAGAC | 1 cut(s) | 391 |
| BpmI | CTGGAG | 3 cut(s) | 747, 886, 916 |
| Bpu10I | CCTNAGC | 3 cut(s) | 917, 1620, 1633 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 1115 |
| BpuMI | CCSGG | 1 cut(s) | 1807 |
| BsaHI | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| BsaI | GGTCTC | 2 cut(s) | 934, 1163 |
| BsaJI | CCNNGG | 9 cut(s) | 158, 318, 677, 705, 1365, 1437, 1566, 1575, 1752 |
| Bse1I | ACTGG | 1 cut(s) | 1550 |
| Bse21I | CCTNAGG | 1 cut(s) | 1110 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| BseBI | CCWGG | 5 cut(s) | 319, 411, 503, 679, 904 |
| BseDI | CCNNGG | 9 cut(s) | 158, 318, 677, 705, 1365, 1437, 1566, 1575, 1752 |
| BseGI | GGATG | 5 cut(s) | 78, 220, 1102, 1554, 1672 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 6 cut(s) | 70, 931, 1101, 1611, 1647, 1688 |
| BseNI | ACTGG | 1 cut(s) | 1550 |
| BseRI | GAGGAG | 1 cut(s) | 982 |
| BseSI | GKGCMC | 3 cut(s) | 642, 745, 1630 |
| BseXI | GCAGC | 6 cut(s) | 358, 985, 1354, 1406, 1492, 1828 |
| Bsh1236I | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| Bsh1285I | CGRYCG | 2 cut(s) | 187, 1777 |
| BshFI | GGCC | 5 cut(s) | 544, 701, 1322, 1430, 1727 |
| BshNI | GGYRCC | 6 cut(s) | 637, 742, 1499, 1535, 1625, 1748 |
| BsiEI | CGRYCG | 2 cut(s) | 187, 1777 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1601 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 706 |
| BsiSI | CCGG | 2 cut(s) | 1661, 1806 |
| BslFI | GGGAC | 2 cut(s) | 1114, 1543 |
| BsmAI | GTCTC | 4 cut(s) | 678, 934, 1133, 1163 |
| BsmFI | GGGAC | 2 cut(s) | 1114, 1543 |
| BsnI | GGCC | 5 cut(s) | 544, 701, 1322, 1430, 1727 |
| Bso31I | GGTCTC | 2 cut(s) | 934, 1163 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 706 |
| Bsp1286I | GDGCHC | 4 cut(s) | 642, 745, 1601, 1630 |
| Bsp143I | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 56 |
| Bsp19I | CCATGG | 2 cut(s) | 1437, 1752 |
| Bsp68I | TCGCGA | 1 cut(s) | 330 |
| BspANI | GGCC | 5 cut(s) | 544, 701, 1322, 1430, 1727 |
| BspCNI | CTCAG | 6 cut(s) | 69, 930, 1102, 1612, 1646, 1687 |
| BspFNI | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| BspMAI | CTGCAG | 3 cut(s) | 109, 892, 1344 |
| BspMI | ACCTGC | 1 cut(s) | 895 |
| BspOI | GCTAGC | 2 cut(s) | 251, 1313 |
| BspPI | GGATC | 4 cut(s) | 1254, 1330, 1356, 1759 |
| BspQI | GCTCTTC | 1 cut(s) | 1409 |
| BspT107I | GGYRCC | 6 cut(s) | 637, 742, 1499, 1535, 1625, 1748 |
| BspTI | CTTAAG | 1 cut(s) | 1250 |
| BspTNI | GGTCTC | 2 cut(s) | 934, 1163 |
| BsrBI | CCGCTC | 5 cut(s) | 1048, 1075, 1243, 1264, 1632 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrI | ACTGG | 1 cut(s) | 1550 |
| BssECI | CCNNGG | 9 cut(s) | 158, 318, 677, 705, 1365, 1437, 1566, 1575, 1752 |
| BssMI | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| BssNI | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| BssSI | CACGAG | 1 cut(s) | 1043 |
| BssT1I | CCWWGG | 4 cut(s) | 158, 1437, 1575, 1752 |
| Bst2BI | CACGAG | 1 cut(s) | 1043 |
| Bst2UI | CCWGG | 5 cut(s) | 319, 411, 503, 679, 904 |
| Bst4CI | ACNGT | 6 cut(s) | 120, 343, 386, 481, 839, 1603 |
| Bst6I | CTCTTC | 2 cut(s) | 931, 1409 |
| BstACI | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| BstAFI | CTTAAG | 1 cut(s) | 1250 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1211 |
| BstC8I | GCNNGC | 9 cut(s) | 249, 253, 295, 684, 1073, 1216, 1311, 1399, 1630 |
| BstDEI | CTNAG | 6 cut(s) | 56, 917, 1110, 1620, 1633, 1674 |
| BstDSI | CCRYGG | 4 cut(s) | 1365, 1437, 1566, 1752 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| BstF5I | GGATG | 5 cut(s) | 78, 220, 1102, 1554, 1672 |
| BstFNI | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| BstH2I | RGCGCY | 2 cut(s) | 1183, 1539 |
| BstHHI | GCGC | 2 cut(s) | 1182, 1538 |
| BstKTI | GATC | 7 cut(s) | 21, 1042, 1249, 1338, 1364, 1767, 1777 |
| BstMAI | GTCTC | 4 cut(s) | 678, 934, 1133, 1163 |
| BstMBI | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| BstMCI | CGRYCG | 2 cut(s) | 187, 1777 |
| BstNI | CCWGG | 5 cut(s) | 319, 411, 503, 679, 904 |
| BstNSI | RCATGY | 2 cut(s) | 614, 1522 |
| BstSCI | CCNGG | 6 cut(s) | 317, 409, 501, 677, 902, 1805 |
| BstSFI | CTRYAG | 5 cut(s) | 105, 146, 339, 888, 1340 |
| BstSLI | GKGCMC | 3 cut(s) | 642, 745, 1630 |
| BstUI | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| BstV1I | GCAGC | 6 cut(s) | 358, 985, 1354, 1406, 1492, 1828 |
| BstV2I | GAAGAC | 1 cut(s) | 391 |
| BstX2I | RGATCY | 4 cut(s) | 18, 1246, 1335, 1361 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1745 |
| BstYI | RGATCY | 4 cut(s) | 18, 1246, 1335, 1361 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1110 |
| BsuRI | GGCC | 5 cut(s) | 544, 701, 1322, 1430, 1727 |
| BtgI | CCRYGG | 4 cut(s) | 1365, 1437, 1566, 1752 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 5 cut(s) | 78, 220, 1102, 1554, 1672 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 116, 438, 1599 |
| BtuMI | TCGCGA | 1 cut(s) | 330 |
| BveI | ACCTGC | 1 cut(s) | 895 |
| Cac8I | GCNNGC | 9 cut(s) | 249, 253, 295, 684, 1073, 1216, 1311, 1399, 1630 |
| CaiI | CAGNNNCTG | 1 cut(s) | 887 |
| CfoI | GCGC | 2 cut(s) | 1182, 1538 |
| Cfr13I | GGNCC | 6 cut(s) | 359, 542, 906, 1101, 1303, 1572 |
| Cfr42I | CCGCGG | 2 cut(s) | 1368, 1569 |
| CseI | GACGC | 8 cut(s) | 80, 731, 931, 1211, 1219, 1545, 1646, 1768 |
| Csp6I | GTAC | 4 cut(s) | 560, 840, 1465, 1749 |
| CviAII | CATG | 9 cut(s) | 61, 611, 984, 1438, 1519, 1712, 1723, 1753, 1857 |
| CviQI | GTAC | 4 cut(s) | 560, 840, 1465, 1749 |
| DdeI | CTNAG | 6 cut(s) | 56, 917, 1110, 1620, 1633, 1674 |
| DinI | GGCGCC | 1 cut(s) | 1537 |
| DpnI | GATC | 7 cut(s) | 20, 1041, 1248, 1337, 1363, 1766, 1776 |
| DpnII | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| EaeI | YGGCCR | 2 cut(s) | 699, 1725 |
| Eam1104I | CTCTTC | 2 cut(s) | 931, 1409 |
| EarI | CTCTTC | 2 cut(s) | 931, 1409 |
| EciI | GGCGGA | 4 cut(s) | 80, 392, 1011, 1679 |
| Eco130I | CCWWGG | 4 cut(s) | 158, 1437, 1575, 1752 |
| Eco31I | GGTCTC | 2 cut(s) | 934, 1163 |
| Eco47I | GGWCC | 5 cut(s) | 359, 906, 1101, 1303, 1572 |
| Eco81I | CCTNAGG | 1 cut(s) | 1110 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 706 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| EcoO109I | RGGNCCY | 3 cut(s) | 542, 1101, 1572 |
| EcoRII | CCWGG | 5 cut(s) | 317, 409, 501, 677, 902 |
| EcoT14I | CCWWGG | 4 cut(s) | 158, 1437, 1575, 1752 |
| EgeI | GGCGCC | 1 cut(s) | 1537 |
| EheI | GGCGCC | 1 cut(s) | 1537 |
| ErhI | CCWWGG | 4 cut(s) | 158, 1437, 1575, 1752 |
| FaeI | CATG | 9 cut(s) | 64, 614, 987, 1441, 1522, 1715, 1726, 1756, 1860 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 383, 415 |
| FaqI | GGGAC | 2 cut(s) | 1114, 1543 |
| FatI | CATG | 9 cut(s) | 60, 610, 983, 1437, 1518, 1711, 1722, 1752, 1856 |
| FbaI | TGATCA | 1 cut(s) | 1039 |
| FokI | GGATG | 5 cut(s) | 85, 227, 1109, 1561, 1679 |
| FspBI | CTAG | 9 cut(s) | 6, 131, 201, 248, 267, 807, 1208, 1310, 1794 |
| GlaI | GCGC | 2 cut(s) | 1181, 1537 |
| GsuI | CTGGAG | 3 cut(s) | 747, 886, 916 |
| HaeII | RGCGCY | 2 cut(s) | 1183, 1539 |
| HaeIII | GGCC | 5 cut(s) | 544, 701, 1322, 1430, 1727 |
| HapII | CCGG | 2 cut(s) | 1661, 1806 |
| HgaI | GACGC | 8 cut(s) | 80, 731, 931, 1211, 1219, 1545, 1646, 1768 |
| HhaI | GCGC | 2 cut(s) | 1182, 1538 |
| Hin1I | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| Hin1II | CATG | 9 cut(s) | 64, 614, 987, 1441, 1522, 1715, 1726, 1756, 1860 |
| Hin6I | GCGC | 2 cut(s) | 1180, 1536 |
| HinP1I | GCGC | 2 cut(s) | 1180, 1536 |
| HincII | GTYRAC | 1 cut(s) | 315 |
| HindII | GTYRAC | 1 cut(s) | 315 |
| HpaII | CCGG | 2 cut(s) | 1661, 1806 |
| HphI | GGTGA | 7 cut(s) | 430, 780, 976, 1133, 1327, 1768, 1841 |
| Hpy166II | GTNNAC | 2 cut(s) | 315, 616 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 124, 766, 947, 1361, 1702, 1786 |
| Hpy188III | TCNNGA | 9 cut(s) | 22, 191, 329, 485, 812, 933, 1033, 1043, 1132 |
| Hpy8I | GTNNAC | 2 cut(s) | 315, 616 |
| Hpy99I | CGWCG | 3 cut(s) | 335, 1205, 1235 |
| HpyCH4III | ACNGT | 6 cut(s) | 120, 343, 386, 481, 839, 1603 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 953 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 170, 890, 987, 1153, 1342 |
| HpyF3I | CTNAG | 6 cut(s) | 56, 917, 1110, 1620, 1633, 1674 |
| HpySE526I | ACGT | 2 cut(s) | 48, 953 |
| Hsp92I | GRCGYC | 4 cut(s) | 942, 1536, 1556, 1760 |
| Hsp92II | CATG | 9 cut(s) | 64, 614, 987, 1441, 1522, 1715, 1726, 1756, 1860 |
| HspAI | GCGC | 2 cut(s) | 1180, 1536 |
| KasI | GGCGCC | 1 cut(s) | 1535 |
| KpnI | GGTACC | 1 cut(s) | 1752 |
| Ksp22I | TGATCA | 1 cut(s) | 1039 |
| KspI | CCGCGG | 2 cut(s) | 1368, 1569 |
| Kzo9I | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| LguI | GCTCTTC | 1 cut(s) | 1409 |
| LmnI | GCTCC | 5 cut(s) | 432, 728, 901, 1369, 1849 |
| Lsp1109I | GCAGC | 6 cut(s) | 358, 985, 1354, 1406, 1492, 1828 |
| LweI | GCATC | 1 cut(s) | 1201 |
| MaeI | CTAG | 9 cut(s) | 6, 131, 201, 248, 267, 807, 1208, 1310, 1794 |
| MaeII | ACGT | 2 cut(s) | 48, 953 |
| MaeIII | GTNAC | 3 cut(s) | 260, 1756, 1829 |
| MalI | GATC | 7 cut(s) | 20, 1041, 1248, 1337, 1363, 1766, 1776 |
| MbiI | CCGCTC | 5 cut(s) | 1048, 1075, 1243, 1264, 1632 |
| MboI | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| MboII | GAAGA | 7 cut(s) | 90, 314, 391, 948, 1397, 1400, 1426 |
| MflI | RGATCY | 4 cut(s) | 18, 1246, 1335, 1361 |
| MhlI | GDGCHC | 4 cut(s) | 642, 745, 1601, 1630 |
| MlsI | TGGCCA | 1 cut(s) | 701 |
| MluCI | AATT | 2 cut(s) | 1379, 1704 |
| MluNI | TGGCCA | 1 cut(s) | 701 |
| Mly113I | GGCGCC | 1 cut(s) | 1536 |
| MlyI | GAGTC | 7 cut(s) | 77, 320, 532, 1001, 1135, 1664, 1675 |
| MmeI | TCCRAC | 2 cut(s) | 1074, 1803 |
| Mox20I | TGGCCA | 1 cut(s) | 701 |
| MscI | TGGCCA | 1 cut(s) | 701 |
| MseI | TTAA | 4 cut(s) | 759, 1226, 1251, 1332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 570 |
| Msp20I | TGGCCA | 1 cut(s) | 701 |
| MspA1I | CMGCKG | 9 cut(s) | 278, 371, 467, 1276, 1367, 1505, 1568, 1585, 1678 |
| MspCI | CTTAAG | 1 cut(s) | 1250 |
| MspI | CCGG | 2 cut(s) | 1661, 1806 |
| MspR9I | CCNGG | 6 cut(s) | 319, 411, 503, 679, 904, 1807 |
| MvaI | CCWGG | 5 cut(s) | 319, 411, 503, 679, 904 |
| MvnI | CGCG | 6 cut(s) | 330, 793, 1025, 1218, 1367, 1568 |
| NarI | GGCGCC | 1 cut(s) | 1536 |
| NciI | CCSGG | 1 cut(s) | 1807 |
| NcoI | CCATGG | 2 cut(s) | 1437, 1752 |
| NdeII | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| NheI | GCTAGC | 2 cut(s) | 247, 1309 |
| NlaIII | CATG | 9 cut(s) | 64, 614, 987, 1441, 1522, 1715, 1726, 1756, 1860 |
| NmuCI | GTSAC | 3 cut(s) | 260, 1756, 1829 |
| NruI | TCGCGA | 1 cut(s) | 330 |
| NspI | RCATGY | 2 cut(s) | 614, 1522 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PaqCI | CACCTGC | 1 cut(s) | 895 |
| PciI | ACATGT | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 1 cut(s) | 1409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PfeI | GAWTC | 4 cut(s) | 665, 785, 1349, 1442 |
| PflFI | GACNNNGTC | 1 cut(s) | 1835 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 1545 |
| PfoI | TCCNGGA | 1 cut(s) | 902 |
| Ple19I | CGATCG | 1 cut(s) | 1777 |
| PleI | GAGTC | 7 cut(s) | 77, 319, 531, 1001, 1134, 1664, 1675 |
| PluTI | GGCGCC | 1 cut(s) | 1539 |
| PpsI | GAGTC | 7 cut(s) | 77, 319, 531, 1001, 1134, 1664, 1675 |
| PpuMI | RGGWCCY | 2 cut(s) | 1101, 1572 |
| PscI | ACATGT | 1 cut(s) | 610 |
| Psp5II | RGGWCCY | 2 cut(s) | 1101, 1572 |
| Psp6I | CCWGG | 5 cut(s) | 317, 409, 501, 677, 902 |
| PspGI | CCWGG | 5 cut(s) | 317, 409, 501, 677, 902 |
| PspPI | GGNCC | 6 cut(s) | 359, 542, 906, 1101, 1303, 1572 |
| PspPPI | RGGWCCY | 2 cut(s) | 1101, 1572 |
| PstI | CTGCAG | 3 cut(s) | 109, 892, 1344 |
| PstNI | CAGNNNCTG | 1 cut(s) | 887 |
| PsuI | RGATCY | 4 cut(s) | 18, 1246, 1335, 1361 |
| PsyI | GACNNNGTC | 1 cut(s) | 1835 |
| PvuI | CGATCG | 1 cut(s) | 1777 |
| PvuII | CAGCTG | 2 cut(s) | 371, 1276 |
| RruI | TCGCGA | 1 cut(s) | 330 |
| RsaI | GTAC | 4 cut(s) | 561, 841, 1466, 1750 |
| RsaNI | GTAC | 4 cut(s) | 560, 840, 1465, 1749 |
| RseI | CAYNNNNRTG | 1 cut(s) | 570 |
| SacII | CCGCGG | 2 cut(s) | 1368, 1569 |
| SapI | GCTCTTC | 1 cut(s) | 1409 |
| SaqAI | TTAA | 4 cut(s) | 759, 1226, 1251, 1332 |
| Sau3AI | GATC | 7 cut(s) | 18, 1039, 1246, 1335, 1361, 1764, 1774 |
| Sau96I | GGNCC | 6 cut(s) | 359, 542, 906, 1101, 1303, 1572 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 7 cut(s) | 77, 320, 532, 1001, 1135, 1664, 1675 |
| ScrFI | CCNGG | 6 cut(s) | 319, 411, 503, 679, 904, 1807 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 4 cut(s) | 642, 745, 1601, 1630 |
| SfaNI | GCATC | 1 cut(s) | 1201 |
| SfcI | CTRYAG | 5 cut(s) | 105, 146, 339, 888, 1340 |
| SfoI | GGCGCC | 1 cut(s) | 1537 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| Sfr303I | CCGCGG | 2 cut(s) | 1368, 1569 |
| SgrBI | CCGCGG | 2 cut(s) | 1368, 1569 |
| SinI | GGWCC | 5 cut(s) | 359, 906, 1101, 1303, 1572 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 570 |
| SmlI | CTYRAG | 3 cut(s) | 22, 1130, 1250 |
| SmoI | CTYRAG | 3 cut(s) | 22, 1130, 1250 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 2 cut(s) | 1379, 1704 |
| SspDI | GGCGCC | 1 cut(s) | 1535 |
| SspMI | CTAG | 9 cut(s) | 6, 131, 201, 248, 267, 807, 1208, 1310, 1794 |
| StyD4I | CCNGG | 6 cut(s) | 317, 409, 501, 677, 902, 1805 |
| StyI | CCWWGG | 4 cut(s) | 158, 1437, 1575, 1752 |
| TaaI | ACNGT | 6 cut(s) | 120, 343, 386, 481, 839, 1603 |
| TaiI | ACGT | 2 cut(s) | 51, 956 |
| TaqI | TCGA | 3 cut(s) | 23, 138, 1239 |
| TaqII | GACCGA | 3 cut(s) | 173, 376, 1187 |
| TasI | AATT | 2 cut(s) | 1379, 1704 |
| TfiI | GAWTC | 4 cut(s) | 665, 785, 1349, 1442 |
| Tru1I | TTAA | 4 cut(s) | 759, 1226, 1251, 1332 |
| Tru9I | TTAA | 4 cut(s) | 759, 1226, 1251, 1332 |
| TscAI | CASTG | 4 cut(s) | 34, 123, 445, 1606 |
| TseFI | GTSAC | 3 cut(s) | 260, 1756, 1829 |
| TseI | GCWGC | 6 cut(s) | 371, 973, 1342, 1419, 1505, 1841 |
| Tsp45I | GTSAC | 3 cut(s) | 260, 1756, 1829 |
| TspDTI | ATGAA | 4 cut(s) | 588, 674, 1565, 1711 |
| TspRI | CASTG | 4 cut(s) | 34, 123, 445, 1606 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1835 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 1545 |
| Vha464I | CTTAAG | 1 cut(s) | 1250 |
| VpaK11BI | GGWCC | 5 cut(s) | 359, 906, 1101, 1303, 1572 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| XapI | RAATTY | 2 cut(s) | 1379, 1704 |
| XceI | RCATGY | 2 cut(s) | 614, 1522 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XspI | CTAG | 9 cut(s) | 6, 131, 201, 248, 267, 807, 1208, 1310, 1794 |