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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 390, 426, 531 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 436 |
| AccBSI | CCGCTC | 2 cut(s) | 134, 146 |
| AcoI | YGGCCR | 3 cut(s) | 118, 202, 319 |
| AfaI | GTAC | 3 cut(s) | 339, 357, 497 |
| AfeI | AGCGCT | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 26, 49, 133, 190, 191, 236, 436, 521 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 1 cut(s) | 225 |
| AjnI | CCWGG | 1 cut(s) | 515 |
| AluBI | AGCT | 2 cut(s) | 116, 310 |
| AluI | AGCT | 2 cut(s) | 116, 310 |
| Aor51HI | AGCGCT | 1 cut(s) | 299 |
| AoxI | GGCC | 7 cut(s) | 17, 40, 118, 202, 256, 319, 385 |
| ApeKI | GCWGC | 5 cut(s) | 310, 315, 378, 413, 416 |
| AspLEI | GCGC | 2 cut(s) | 300, 315 |
| AspS9I | GGNCC | 2 cut(s) | 17, 41 |
| AsuC2I | CCSGG | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 2 cut(s) | 291, 452 |
| BanI | GGYRCC | 3 cut(s) | 390, 426, 531 |
| BauI | CACGAG | 1 cut(s) | 106 |
| BbvCI | CCTCAGC | 1 cut(s) | 301 |
| BbvI | GCAGC | 5 cut(s) | 297, 302, 390, 400, 428 |
| BccI | CCATC | 1 cut(s) | 438 |
| BceAI | ACGGC | 3 cut(s) | 105, 285, 312 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 75, 109 |
| BciT130I | CCWGG | 1 cut(s) | 517 |
| BcnI | CCSGG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 2 cut(s) | 21, 414 |
| BfoI | RGCGCY | 1 cut(s) | 301 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 255 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 517 |
| BmgT120I | GGNCC | 2 cut(s) | 17, 41 |
| BmiI | GGNNCC | 3 cut(s) | 392, 428, 533 |
| BmrFI | CCNGG | 2 cut(s) | 237, 517 |
| BmrI | ACTGGG | 1 cut(s) | 446 |
| BmsI | GCATC | 3 cut(s) | 83, 442, 456 |
| BmuI | ACTGGG | 1 cut(s) | 446 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 561 |
| BpmI | CTGGAG | 1 cut(s) | 294 |
| Bpu10I | CCTNAGC | 3 cut(s) | 208, 294, 301 |
| BpuMI | CCSGG | 1 cut(s) | 237 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 4 cut(s) | 259, 328, 394, 515 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 26, 49, 133, 190, 191, 236, 436, 521 |
| Bse118I | RCCGGY | 2 cut(s) | 387, 455 |
| Bse1I | ACTGG | 1 cut(s) | 441 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| BseBI | CCWGG | 1 cut(s) | 517 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseDI | CCNNGG | 4 cut(s) | 259, 328, 394, 515 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 26, 49, 133, 190, 191, 236, 436, 521 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 2 cut(s) | 285, 292 |
| BseNI | ACTGG | 1 cut(s) | 441 |
| BseRI | GAGGAG | 1 cut(s) | 21 |
| BseX3I | CGGCCG | 1 cut(s) | 319 |
| BseXI | GCAGC | 5 cut(s) | 297, 302, 390, 400, 428 |
| BsgI | GTGCAG | 1 cut(s) | 216 |
| Bsh1285I | CGRYCG | 1 cut(s) | 322 |
| BshFI | GGCC | 7 cut(s) | 19, 42, 120, 204, 258, 321, 387 |
| BshNI | GGYRCC | 3 cut(s) | 390, 426, 531 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiEI | CGRYCG | 1 cut(s) | 322 |
| BsiSI | CCGG | 4 cut(s) | 236, 388, 456, 567 |
| BslFI | GGGAC | 3 cut(s) | 42, 150, 167 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 26, 49, 133, 190, 191, 236, 436, 521 |
| BsmFI | GGGAC | 3 cut(s) | 42, 150, 167 |
| BsnI | GGCC | 7 cut(s) | 19, 42, 120, 204, 258, 321, 387 |
| Bsp143I | GATC | 1 cut(s) | 370 |
| Bsp19I | CCATGG | 1 cut(s) | 394 |
| BspANI | GGCC | 7 cut(s) | 19, 42, 120, 204, 258, 321, 387 |
| BspCNI | CTCAG | 2 cut(s) | 286, 293 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspLI | GGNNCC | 3 cut(s) | 392, 428, 533 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspT107I | GGYRCC | 3 cut(s) | 390, 426, 531 |
| BsrBI | CCGCTC | 2 cut(s) | 134, 146 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrFI | RCCGGY | 2 cut(s) | 387, 455 |
| BsrI | ACTGG | 1 cut(s) | 441 |
| BssAI | RCCGGY | 2 cut(s) | 387, 455 |
| BssECI | CCNNGG | 4 cut(s) | 259, 328, 394, 515 |
| BssMI | GATC | 1 cut(s) | 370 |
| BssSI | CACGAG | 1 cut(s) | 106 |
| BssT1I | CCWWGG | 1 cut(s) | 394 |
| Bst2BI | CACGAG | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 1 cut(s) | 517 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 5 cut(s) | 17, 114, 118, 469, 536 |
| BstDEI | CTNAG | 4 cut(s) | 208, 294, 301, 580 |
| BstDSI | CCRYGG | 2 cut(s) | 328, 394 |
| BstH2I | RGCGCY | 1 cut(s) | 301 |
| BstHHI | GCGC | 2 cut(s) | 300, 315 |
| BstKTI | GATC | 1 cut(s) | 373 |
| BstMBI | GATC | 1 cut(s) | 370 |
| BstMCI | CGRYCG | 1 cut(s) | 322 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 102, 255, 321, 324, 384, 461 |
| BstNI | CCWGG | 1 cut(s) | 517 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstSCI | CCNGG | 2 cut(s) | 235, 515 |
| BstSFI | CTRYAG | 2 cut(s) | 21, 414 |
| BstV1I | GCAGC | 5 cut(s) | 297, 302, 390, 400, 428 |
| BstZI | CGGCCG | 1 cut(s) | 319 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuRI | GGCC | 7 cut(s) | 19, 42, 120, 204, 258, 321, 387 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgI | CCRYGG | 2 cut(s) | 328, 394 |
| BtsI | GCAGTG | 1 cut(s) | 508 |
| BtsIMutI | CAGTG | 1 cut(s) | 508 |
| Cac8I | GCNNGC | 5 cut(s) | 17, 114, 118, 469, 536 |
| CciNI | GCGGCCGC | 1 cut(s) | 319 |
| CfoI | GCGC | 2 cut(s) | 300, 315 |
| Cfr10I | RCCGGY | 2 cut(s) | 387, 455 |
| Cfr13I | GGNCC | 2 cut(s) | 17, 41 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 2 cut(s) | 79, 111 |
| Csp6I | GTAC | 3 cut(s) | 338, 356, 496 |
| CviAII | CATG | 3 cut(s) | 179, 395, 461 |
| CviQI | GTAC | 3 cut(s) | 338, 356, 496 |
| DdeI | CTNAG | 4 cut(s) | 208, 294, 301, 580 |
| DpnI | GATC | 1 cut(s) | 372 |
| DpnII | GATC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 3 cut(s) | 118, 202, 319 |
| EagI | CGGCCG | 1 cut(s) | 319 |
| EciI | GGCGGA | 2 cut(s) | 114, 574 |
| EclXI | CGGCCG | 1 cut(s) | 319 |
| Eco130I | CCWWGG | 1 cut(s) | 394 |
| Eco47III | AGCGCT | 1 cut(s) | 299 |
| Eco52I | CGGCCG | 1 cut(s) | 319 |
| EcoRII | CCWGG | 1 cut(s) | 515 |
| EcoT14I | CCWWGG | 1 cut(s) | 394 |
| ErhI | CCWWGG | 1 cut(s) | 394 |
| FaeI | CATG | 3 cut(s) | 182, 398, 464 |
| FaiI | YATR | 4 cut(s) | 180, 396, 421, 462 |
| FaqI | GGGAC | 3 cut(s) | 42, 150, 167 |
| FatI | CATG | 3 cut(s) | 178, 394, 460 |
| FauI | CCCGC | 3 cut(s) | 8, 127, 184 |
| GlaI | GCGC | 2 cut(s) | 299, 314 |
| GsuI | CTGGAG | 1 cut(s) | 294 |
| HaeII | RGCGCY | 1 cut(s) | 301 |
| HaeIII | GGCC | 7 cut(s) | 19, 42, 120, 204, 258, 321, 387 |
| HapII | CCGG | 4 cut(s) | 236, 388, 456, 567 |
| HgaI | GACGC | 2 cut(s) | 79, 111 |
| HhaI | GCGC | 2 cut(s) | 300, 315 |
| Hin1II | CATG | 3 cut(s) | 182, 398, 464 |
| Hin6I | GCGC | 2 cut(s) | 298, 313 |
| HinP1I | GCGC | 2 cut(s) | 298, 313 |
| HinfI | GANTC | 3 cut(s) | 240, 333, 576 |
| HpaII | CCGG | 4 cut(s) | 236, 388, 456, 567 |
| HphI | GGTGA | 2 cut(s) | 291, 452 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 4 cut(s) | 212, 356, 377, 437 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 2 cut(s) | 233, 416 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 102, 255, 321, 324, 384, 461 |
| HpyF3I | CTNAG | 4 cut(s) | 208, 294, 301, 580 |
| Hsp92II | CATG | 3 cut(s) | 182, 398, 464 |
| HspAI | GCGC | 2 cut(s) | 298, 313 |
| Kzo9I | GATC | 1 cut(s) | 370 |
| LmnI | GCTCC | 3 cut(s) | 143, 170, 307 |
| Lsp1109I | GCAGC | 5 cut(s) | 297, 302, 390, 400, 428 |
| LweI | GCATC | 3 cut(s) | 83, 442, 456 |
| MalI | GATC | 1 cut(s) | 372 |
| MbiI | CCGCTC | 2 cut(s) | 134, 146 |
| MboI | GATC | 1 cut(s) | 370 |
| MboII | GAAGA | 1 cut(s) | 485 |
| MlyI | GAGTC | 3 cut(s) | 249, 342, 570 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| MnlI | CCTC | 9 cut(s) | 19, 32, 254, 269, 296, 494, 509, 521, 563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 424 |
| MspI | CCGG | 4 cut(s) | 236, 388, 456, 567 |
| MspR9I | CCNGG | 2 cut(s) | 237, 517 |
| MvaI | CCWGG | 1 cut(s) | 517 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 102, 255, 321, 324, 384, 461 |
| NciI | CCSGG | 1 cut(s) | 237 |
| NcoI | CCATGG | 1 cut(s) | 394 |
| NdeII | GATC | 1 cut(s) | 370 |
| NlaIII | CATG | 3 cut(s) | 182, 398, 464 |
| NlaIV | GGNNCC | 3 cut(s) | 392, 428, 533 |
| NmeAIII | GCCGAG | 1 cut(s) | 284 |
| NotI | GCGGCCGC | 1 cut(s) | 319 |
| NspI | RCATGY | 1 cut(s) | 182 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 436 |
| PleI | GAGTC | 3 cut(s) | 248, 341, 570 |
| PpsI | GAGTC | 3 cut(s) | 248, 341, 570 |
| PscI | ACATGT | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 515 |
| PspGI | CCWGG | 1 cut(s) | 515 |
| PspN4I | GGNNCC | 3 cut(s) | 392, 428, 533 |
| PspPI | GGNCC | 2 cut(s) | 17, 41 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| RsaI | GTAC | 3 cut(s) | 339, 357, 497 |
| RsaNI | GTAC | 3 cut(s) | 338, 356, 496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 424 |
| Sau3AI | GATC | 1 cut(s) | 370 |
| Sau96I | GGNCC | 2 cut(s) | 17, 41 |
| SchI | GAGTC | 3 cut(s) | 249, 342, 570 |
| ScrFI | CCNGG | 2 cut(s) | 237, 517 |
| SetI | ASST | 9 cut(s) | 13, 54, 118, 223, 265, 295, 312, 501, 526 |
| SfaNI | GCATC | 3 cut(s) | 83, 442, 456 |
| SfcI | CTRYAG | 2 cut(s) | 21, 414 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 424 |
| StyD4I | CCNGG | 2 cut(s) | 235, 515 |
| StyI | CCWWGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaqI | TCGA | 5 cut(s) | 64, 373, 433, 450, 486 |
| TatI | WGTACW | 1 cut(s) | 355 |
| TauI | GCSGC | 7 cut(s) | 99, 207, 249, 321, 324, 327, 467 |
| TscAI | CASTG | 1 cut(s) | 515 |
| TseI | GCWGC | 5 cut(s) | 310, 315, 378, 413, 416 |
| TspRI | CASTG | 1 cut(s) | 515 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 436 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 401 |