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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1980 |
| Acc36I | ACCTGC | 1 cut(s) | 888 |
| AccB1I | GGYRCC | 8 cut(s) | 371, 683, 871, 1513, 1552, 2052, 2306, 2342 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 195, 936, 2352 |
| AccBSI | CCGCTC | 8 cut(s) | 764, 1548, 1695, 2050, 2071, 2417, 2466, 2624 |
| AccIII | TCCGGA | 3 cut(s) | 39, 226, 538 |
| AclWI | GGATC | 1 cut(s) | 880 |
| AcoI | YGGCCR | 2 cut(s) | 1459, 2040 |
| AcsI | RAATTY | 1 cut(s) | 2489 |
| AcuI | CTGAAG | 6 cut(s) | 446, 758, 1344, 1816, 2132, 2678 |
| AcyI | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| AdeI | CACNNNGTG | 1 cut(s) | 1149 |
| AfeI | AGCGCT | 1 cut(s) | 954 |
| AflIII | ACRYGT | 4 cut(s) | 64, 933, 1178, 2094 |
| AgsI | TTSAA | 7 cut(s) | 492, 804, 1303, 1670, 2141, 2249, 2456 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2592 |
| AhlI | ACTAGT | 1 cut(s) | 70 |
| AjiI | CACGTC | 2 cut(s) | 224, 536 |
| AjnI | CCWGG | 9 cut(s) | 236, 548, 1338, 1362, 1878, 1959, 2021, 2055, 2443 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1734, 1766 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 834 |
| Alw26I | GTCTC | 3 cut(s) | 1142, 1259, 2579 |
| Alw44I | GTGCAC | 2 cut(s) | 518, 830 |
| AlwI | GGATC | 1 cut(s) | 880 |
| Ama87I | CYCGRG | 2 cut(s) | 2467, 2565 |
| Aor13HI | TCCGGA | 3 cut(s) | 39, 226, 538 |
| Aor51HI | AGCGCT | 1 cut(s) | 954 |
| ApaI | GGGCCC | 2 cut(s) | 1534, 1633 |
| ApaLI | GTGCAC | 2 cut(s) | 518, 830 |
| ApoI | RAATTY | 1 cut(s) | 2489 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2145 |
| AsuC2I | CCSGG | 8 cut(s) | 447, 759, 1147, 1275, 1627, 2114, 2566, 2567 |
| AsuHPI | GGTGA | 5 cut(s) | 466, 778, 1135, 1615, 2207 |
| AsuNHI | GCTAGC | 1 cut(s) | 949 |
| AvaI | CYCGRG | 2 cut(s) | 2467, 2565 |
| AvaII | GGWCC | 4 cut(s) | 989, 1315, 1491, 2110 |
| BaeGI | GKGCMC | 7 cut(s) | 522, 822, 834, 929, 1534, 1633, 2284 |
| BalI | TGGCCA | 1 cut(s) | 2042 |
| BanI | GGYRCC | 8 cut(s) | 371, 683, 871, 1513, 1552, 2052, 2306, 2342 |
| BanII | GRGCYC | 4 cut(s) | 1412, 1534, 1633, 2464 |
| BauI | CACGAG | 4 cut(s) | 521, 833, 1068, 1868 |
| BbsI | GAAGAC | 2 cut(s) | 88, 1382 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 834 |
| BbvCI | CCTCAGC | 2 cut(s) | 1916, 2217 |
| BccI | CCATC | 3 cut(s) | 1420, 2392, 2636 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1991, 2025 |
| BciT130I | CCWGG | 9 cut(s) | 238, 550, 1340, 1364, 1880, 1961, 2023, 2057, 2445 |
| BciVI | GTATCC | 3 cut(s) | 334, 646, 2110 |
| BcnI | CCSGG | 8 cut(s) | 447, 759, 1147, 1275, 1627, 2114, 2566, 2567 |
| BcoDI | GTCTC | 3 cut(s) | 1142, 1259, 2579 |
| BcuI | ACTAGT | 1 cut(s) | 70 |
| BfaI | CTAG | 7 cut(s) | 71, 105, 167, 284, 596, 950, 2189 |
| BfmI | CTRYAG | 5 cut(s) | 51, 182, 881, 1937, 2330 |
| BfoI | RGCGCY | 6 cut(s) | 283, 595, 956, 1042, 1517, 2346 |
| BfuAI | ACCTGC | 1 cut(s) | 888 |
| BfuI | GTATCC | 3 cut(s) | 334, 646, 2110 |
| BlpI | GCTNAGC | 2 cut(s) | 1406, 2508 |
| BmcAI | AGTACT | 1 cut(s) | 1196 |
| Bme18I | GGWCC | 4 cut(s) | 989, 1315, 1491, 2110 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2592 |
| BmeT110I | CYCGRG | 2 cut(s) | 2467, 2565 |
| BmgBI | CACGTC | 2 cut(s) | 224, 536 |
| BmrI | ACTGGG | 3 cut(s) | 1784, 2362, 2586 |
| BmsI | GCATC | 7 cut(s) | 915, 1104, 1999, 2008, 2316, 2358, 2643 |
| BmtI | GCTAGC | 1 cut(s) | 953 |
| BmuI | ACTGGG | 3 cut(s) | 1784, 2362, 2586 |
| BpiI | GAAGAC | 2 cut(s) | 88, 1382 |
| BpmI | CTGGAG | 5 cut(s) | 411, 723, 1361, 1811, 2078 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1916, 2217, 2311 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1406, 2508 |
| BpuMI | CCSGG | 8 cut(s) | 447, 759, 1147, 1275, 1627, 2114, 2566, 2567 |
| BsaAI | YACGTR | 2 cut(s) | 67, 1033 |
| BsaHI | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| BsaI | GGTCTC | 1 cut(s) | 2579 |
| BsaWI | WCCGGW | 5 cut(s) | 39, 226, 438, 538, 750 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1334, 1364, 2660, 2690 |
| Bse118I | RCCGGY | 6 cut(s) | 420, 732, 1238, 1493, 2303, 2371 |
| Bse1I | ACTGG | 7 cut(s) | 1029, 1131, 1779, 2357, 2409, 2592, 2645 |
| Bse3DI | GCAATG | 3 cut(s) | 114, 1317, 2433 |
| BseAI | TCCGGA | 3 cut(s) | 39, 226, 538 |
| BseBI | CCWGG | 9 cut(s) | 238, 550, 1340, 1364, 1880, 1961, 2023, 2057, 2445 |
| BseGI | GGATG | 3 cut(s) | 405, 717, 2384 |
| BseMI | GCAATG | 3 cut(s) | 114, 1317, 2433 |
| BseMII | CTCAG | 6 cut(s) | 1397, 1907, 2208, 2520, 2522, 2688 |
| BseNI | ACTGG | 7 cut(s) | 1029, 1131, 1779, 2357, 2409, 2592, 2645 |
| BseRI | GAGGAG | 7 cut(s) | 290, 494, 602, 806, 1130, 1622, 1625 |
| BseSI | GKGCMC | 7 cut(s) | 522, 822, 834, 929, 1534, 1633, 2284 |
| BseYI | CCCAGC | 1 cut(s) | 2543 |
| BsgI | GTGCAG | 2 cut(s) | 1102, 1353 |
| Bsh1285I | CGRYCG | 2 cut(s) | 996, 2376 |
| BshNI | GGYRCC | 8 cut(s) | 371, 683, 871, 1513, 1552, 2052, 2306, 2342 |
| BsiEI | CGRYCG | 2 cut(s) | 996, 2376 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 834 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2467, 2565 |
| BslFI | GGGAC | 7 cut(s) | 282, 1504, 1958, 2083, 2123, 2521, 2580 |
| BsmAI | GTCTC | 3 cut(s) | 1142, 1259, 2579 |
| BsmBI | CGTCTC | 1 cut(s) | 1142 |
| BsmFI | GGGAC | 7 cut(s) | 282, 1504, 1958, 2083, 2123, 2521, 2580 |
| Bso31I | GGTCTC | 1 cut(s) | 2579 |
| BsoBI | CYCGRG | 2 cut(s) | 2467, 2565 |
| Bsp120I | GGGCCC | 2 cut(s) | 1530, 1629 |
| Bsp1286I | GDGCHC | 9 cut(s) | 522, 822, 834, 929, 1412, 1534, 1633, 2284, 2464 |
| Bsp13I | TCCGGA | 3 cut(s) | 39, 226, 538 |
| Bsp1407I | TGTACA | 1 cut(s) | 1480 |
| Bsp143I | GATC | 3 cut(s) | 86, 885, 2178 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1406, 2508 |
| BspCNI | CTCAG | 6 cut(s) | 1398, 1908, 2209, 2521, 2521, 2689 |
| BspEI | TCCGGA | 3 cut(s) | 39, 226, 538 |
| BspMAI | CTGCAG | 3 cut(s) | 885, 1941, 2334 |
| BspMI | ACCTGC | 1 cut(s) | 888 |
| BspOI | GCTAGC | 1 cut(s) | 953 |
| BspPI | GGATC | 1 cut(s) | 880 |
| BspT107I | GGYRCC | 8 cut(s) | 371, 683, 871, 1513, 1552, 2052, 2306, 2342 |
| BspTNI | GGTCTC | 1 cut(s) | 2579 |
| BsrBI | CCGCTC | 8 cut(s) | 764, 1548, 1695, 2050, 2071, 2417, 2466, 2624 |
| BsrDI | GCAATG | 3 cut(s) | 114, 1317, 2433 |
| BsrFI | RCCGGY | 6 cut(s) | 420, 732, 1238, 1493, 2303, 2371 |
| BsrGI | TGTACA | 1 cut(s) | 1480 |
| BsrI | ACTGG | 7 cut(s) | 1029, 1131, 1779, 2357, 2409, 2592, 2645 |
| BssAI | RCCGGY | 6 cut(s) | 420, 732, 1238, 1493, 2303, 2371 |
| BssMI | GATC | 3 cut(s) | 86, 885, 2178 |
| BssNI | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| BssSI | CACGAG | 4 cut(s) | 521, 833, 1068, 1868 |
| BssT1I | CCWWGG | 2 cut(s) | 2079, 2388 |
| Bst2BI | CACGAG | 4 cut(s) | 521, 833, 1068, 1868 |
| Bst2UI | CCWGG | 9 cut(s) | 238, 550, 1340, 1364, 1880, 1961, 2023, 2057, 2445 |
| Bst4CI | ACNGT | 5 cut(s) | 136, 475, 787, 997, 1319 |
| Bst6I | CTCTTC | 3 cut(s) | 1071, 1360, 1599 |
| BstACI | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| BstAUI | TGTACA | 1 cut(s) | 1480 |
| BstBAI | YACGTR | 2 cut(s) | 67, 1033 |
| BstDEI | CTNAG | 7 cut(s) | 1406, 1916, 2217, 2311, 2508, 2529, 2697 |
| BstDSI | CCRYGG | 4 cut(s) | 996, 1425, 1517, 2232 |
| BstEII | GGTNACC | 1 cut(s) | 1621 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1904 |
| BstF5I | GGATG | 3 cut(s) | 405, 717, 2384 |
| BstH2I | RGCGCY | 6 cut(s) | 283, 595, 956, 1042, 1517, 2346 |
| BstKTI | GATC | 3 cut(s) | 89, 888, 2181 |
| BstMAI | GTCTC | 3 cut(s) | 1142, 1259, 2579 |
| BstMBI | GATC | 3 cut(s) | 86, 885, 2178 |
| BstMCI | CGRYCG | 2 cut(s) | 996, 2376 |
| BstNI | CCWGG | 9 cut(s) | 238, 550, 1340, 1364, 1880, 1961, 2023, 2057, 2445 |
| BstNSI | RCATGY | 4 cut(s) | 937, 1216, 1853, 2098 |
| BstPI | GGTNACC | 1 cut(s) | 1621 |
| BstSFI | CTRYAG | 5 cut(s) | 51, 182, 881, 1937, 2330 |
| BstSLI | GKGCMC | 7 cut(s) | 522, 822, 834, 929, 1534, 1633, 2284 |
| BstV2I | GAAGAC | 2 cut(s) | 88, 1382 |
| BstX2I | RGATCY | 1 cut(s) | 885 |
| BstYI | RGATCY | 1 cut(s) | 885 |
| BsuI | GTATCC | 3 cut(s) | 334, 646, 2110 |
| BtgI | CCRYGG | 4 cut(s) | 996, 1425, 1517, 2232 |
| BtgZI | GCGATG | 2 cut(s) | 892, 2022 |
| BtrI | CACGTC | 2 cut(s) | 224, 536 |
| BtsCI | GGATG | 3 cut(s) | 405, 717, 2384 |
| BtsI | GCAGTG | 2 cut(s) | 522, 834 |
| BtsIMutI | CAGTG | 5 cut(s) | 132, 522, 834, 2282, 2652 |
| BveI | ACCTGC | 1 cut(s) | 888 |
| Cfr10I | RCCGGY | 6 cut(s) | 420, 732, 1238, 1493, 2303, 2371 |
| Cfr42I | CCGCGG | 2 cut(s) | 1520, 2235 |
| Cfr9I | CCCGGG | 1 cut(s) | 2565 |
| CviAII | CATG | 8 cut(s) | 272, 584, 934, 1213, 1438, 1850, 2095, 2450 |
| DdeI | CTNAG | 7 cut(s) | 1406, 1916, 2217, 2311, 2508, 2529, 2697 |
| DinI | GGCGCC | 2 cut(s) | 1515, 2344 |
| DpnI | GATC | 3 cut(s) | 88, 887, 2180 |
| DpnII | GATC | 3 cut(s) | 86, 885, 2178 |
| DraIII | CACNNNGTG | 1 cut(s) | 1149 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2592 |
| EaeI | YGGCCR | 2 cut(s) | 1459, 2040 |
| Eam1104I | CTCTTC | 3 cut(s) | 1071, 1360, 1599 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2592 |
| EarI | CTCTTC | 3 cut(s) | 1071, 1360, 1599 |
| EciI | GGCGGA | 6 cut(s) | 456, 768, 1016, 1126, 2099, 2388 |
| Eco130I | CCWWGG | 2 cut(s) | 2079, 2388 |
| Eco24I | GRGCYC | 4 cut(s) | 1412, 1534, 1633, 2464 |
| Eco31I | GGTCTC | 1 cut(s) | 2579 |
| Eco47I | GGWCC | 4 cut(s) | 989, 1315, 1491, 2110 |
| Eco47III | AGCGCT | 1 cut(s) | 954 |
| Eco57I | CTGAAG | 6 cut(s) | 446, 758, 1344, 1816, 2132, 2678 |
| Eco88I | CYCGRG | 2 cut(s) | 2467, 2565 |
| Eco91I | GGTNACC | 1 cut(s) | 1621 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1904 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1530, 1531, 1629 |
| EcoO65I | GGTNACC | 1 cut(s) | 1621 |
| EcoRI | GAATTC | 1 cut(s) | 2489 |
| EcoRII | CCWGG | 9 cut(s) | 236, 548, 1338, 1362, 1878, 1959, 2021, 2055, 2443 |
| EcoT14I | CCWWGG | 2 cut(s) | 2079, 2388 |
| EcoT38I | GRGCYC | 4 cut(s) | 1412, 1534, 1633, 2464 |
| EgeI | GGCGCC | 2 cut(s) | 1515, 2344 |
| EheI | GGCGCC | 2 cut(s) | 1515, 2344 |
| ErhI | CCWWGG | 2 cut(s) | 2079, 2388 |
| Esp3I | CGTCTC | 1 cut(s) | 1142 |
| FaeI | CATG | 8 cut(s) | 275, 587, 937, 1216, 1441, 1853, 2098, 2453 |
| FaqI | GGGAC | 7 cut(s) | 282, 1504, 1958, 2083, 2123, 2521, 2580 |
| FatI | CATG | 8 cut(s) | 271, 583, 933, 1212, 1437, 1849, 2094, 2449 |
| FokI | GGATG | 3 cut(s) | 412, 724, 2371 |
| FriOI | GRGCYC | 4 cut(s) | 1412, 1534, 1633, 2464 |
| FspBI | CTAG | 7 cut(s) | 71, 105, 167, 284, 596, 950, 2189 |
| GsaI | CCCAGC | 1 cut(s) | 2547 |
| GsuI | CTGGAG | 5 cut(s) | 411, 723, 1361, 1811, 2078 |
| HaeII | RGCGCY | 6 cut(s) | 283, 595, 956, 1042, 1517, 2346 |
| Hin1I | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| Hin1II | CATG | 8 cut(s) | 275, 587, 937, 1216, 1441, 1853, 2098, 2453 |
| HincII | GTYRAC | 5 cut(s) | 418, 694, 730, 1809, 2682 |
| HindII | GTYRAC | 5 cut(s) | 418, 694, 730, 1809, 2682 |
| HindIII | AAGCTT | 2 cut(s) | 486, 798 |
| HphI | GGTGA | 5 cut(s) | 466, 778, 1135, 1615, 2207 |
| Hpy166II | GTNNAC | 9 cut(s) | 418, 520, 694, 730, 832, 1030, 1387, 1809, 2682 |
| Hpy188I | TCNGA | 5 cut(s) | 125, 1100, 1417, 2530, 2610 |
| Hpy188III | TCNNGA | 6 cut(s) | 40, 227, 539, 1070, 1303, 1790 |
| Hpy8I | GTNNAC | 9 cut(s) | 418, 520, 694, 730, 832, 1030, 1387, 1809, 2682 |
| Hpy99I | CGWCG | 8 cut(s) | 28, 475, 787, 1298, 1739, 1982, 2006, 2677 |
| HpyAV | CCTTC | 9 cut(s) | 94, 1516, 1840, 1948, 2119, 2156, 2293, 2450, 2653 |
| HpyCH4III | ACNGT | 5 cut(s) | 136, 475, 787, 997, 1319 |
| HpyCH4IV | ACGT | 7 cut(s) | 66, 223, 535, 1032, 1977, 2037, 2675 |
| HpyF3I | CTNAG | 7 cut(s) | 1406, 1916, 2217, 2311, 2508, 2529, 2697 |
| HpySE526I | ACGT | 7 cut(s) | 66, 223, 535, 1032, 1977, 2037, 2675 |
| Hsp92I | GRCGYC | 5 cut(s) | 1389, 1514, 1977, 2343, 2516 |
| Hsp92II | CATG | 8 cut(s) | 275, 587, 937, 1216, 1441, 1853, 2098, 2453 |
| KasI | GGCGCC | 2 cut(s) | 1513, 2342 |
| Kpn2I | TCCGGA | 3 cut(s) | 39, 226, 538 |
| KspI | CCGCGG | 2 cut(s) | 1520, 2235 |
| Kzo9I | GATC | 3 cut(s) | 86, 885, 2178 |
| LweI | GCATC | 7 cut(s) | 915, 1104, 1999, 2008, 2316, 2358, 2643 |
| MaeI | CTAG | 7 cut(s) | 71, 105, 167, 284, 596, 950, 2189 |
| MaeII | ACGT | 7 cut(s) | 66, 223, 535, 1032, 1977, 2037, 2675 |
| MaeIII | GTNAC | 8 cut(s) | 13, 46, 219, 531, 856, 1463, 1585, 1621 |
| MalI | GATC | 3 cut(s) | 88, 887, 2180 |
| MbiI | CCGCTC | 8 cut(s) | 764, 1548, 1695, 2050, 2071, 2417, 2466, 2624 |
| MboI | GATC | 3 cut(s) | 86, 885, 2178 |
| MboII | GAAGA | 7 cut(s) | 93, 212, 1088, 1347, 1387, 1616, 1657 |
| MflI | RGATCY | 1 cut(s) | 885 |
| MhlI | GDGCHC | 9 cut(s) | 522, 822, 834, 929, 1412, 1534, 1633, 2284, 2464 |
| MlsI | TGGCCA | 1 cut(s) | 2042 |
| MluCI | AATT | 2 cut(s) | 1333, 2489 |
| MluI | ACGCGT | 1 cut(s) | 1178 |
| MluNI | TGGCCA | 1 cut(s) | 2042 |
| Mly113I | GGCGCC | 2 cut(s) | 1514, 2343 |
| MlyI | GAGTC | 7 cut(s) | 356, 668, 1060, 1261, 1832, 1857, 2165 |
| MmeI | TCCRAC | 2 cut(s) | 124, 1840 |
| Mox20I | TGGCCA | 1 cut(s) | 2042 |
| MroI | TCCGGA | 3 cut(s) | 39, 226, 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2145 |
| MscI | TGGCCA | 1 cut(s) | 2042 |
| MseI | TTAA | 2 cut(s) | 35, 138 |
| Msp20I | TGGCCA | 1 cut(s) | 2042 |
| MvaI | CCWGG | 9 cut(s) | 238, 550, 1340, 1364, 1880, 1961, 2023, 2057, 2445 |
| NarI | GGCGCC | 2 cut(s) | 1514, 2343 |
| NciI | CCSGG | 8 cut(s) | 447, 759, 1147, 1275, 1627, 2114, 2566, 2567 |
| NdeII | GATC | 3 cut(s) | 86, 885, 2178 |
| NheI | GCTAGC | 1 cut(s) | 949 |
| NlaIII | CATG | 8 cut(s) | 275, 587, 937, 1216, 1441, 1853, 2098, 2453 |
| NmeAIII | GCCGAG | 1 cut(s) | 1747 |
| NmuCI | GTSAC | 5 cut(s) | 219, 531, 856, 1463, 1621 |
| NspI | RCATGY | 4 cut(s) | 937, 1216, 1853, 2098 |
| PaeI | GCATGC | 1 cut(s) | 1216 |
| PasI | CCCWGGG | 1 cut(s) | 1960 |
| PciI | ACATGT | 2 cut(s) | 933, 2094 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 220 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2145 |
| PfeI | GAWTC | 3 cut(s) | 1114, 1703, 2249 |
| PflFI | GACNNNGTC | 1 cut(s) | 2677 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 195, 936, 2352 |
| PfoI | TCCNGGA | 1 cut(s) | 1338 |
| PleI | GAGTC | 7 cut(s) | 355, 667, 1060, 1261, 1831, 1857, 2164 |
| PluTI | GGCGCC | 2 cut(s) | 1517, 2346 |
| PpsI | GAGTC | 7 cut(s) | 355, 667, 1060, 1261, 1831, 1857, 2164 |
| Ppu21I | YACGTR | 2 cut(s) | 67, 1033 |
| PscI | ACATGT | 2 cut(s) | 933, 2094 |
| Psp6I | CCWGG | 9 cut(s) | 236, 548, 1338, 1362, 1878, 1959, 2021, 2055, 2443 |
| PspEI | GGTNACC | 1 cut(s) | 1621 |
| PspFI | CCCAGC | 1 cut(s) | 2543 |
| PspGI | CCWGG | 9 cut(s) | 236, 548, 1338, 1362, 1878, 1959, 2021, 2055, 2443 |
| PspOMI | GGGCCC | 2 cut(s) | 1530, 1629 |
| PstI | CTGCAG | 3 cut(s) | 885, 1941, 2334 |
| PsuI | RGATCY | 1 cut(s) | 885 |
| PsyI | GACNNNGTC | 1 cut(s) | 2677 |
| PvuII | CAGCTG | 1 cut(s) | 1290 |
| SacII | CCGCGG | 2 cut(s) | 1520, 2235 |
| SaqAI | TTAA | 2 cut(s) | 35, 138 |
| Sau3AI | GATC | 3 cut(s) | 86, 885, 2178 |
| ScaI | AGTACT | 1 cut(s) | 1196 |
| SchI | GAGTC | 7 cut(s) | 356, 668, 1060, 1261, 1832, 1857, 2165 |
| SduI | GDGCHC | 9 cut(s) | 522, 822, 834, 929, 1412, 1534, 1633, 2284, 2464 |
| SfaNI | GCATC | 7 cut(s) | 915, 1104, 1999, 2008, 2316, 2358, 2643 |
| SfcI | CTRYAG | 5 cut(s) | 51, 182, 881, 1937, 2330 |
| SfoI | GGCGCC | 2 cut(s) | 1515, 2344 |
| Sfr303I | CCGCGG | 2 cut(s) | 1520, 2235 |
| SgrBI | CCGCGG | 2 cut(s) | 1520, 2235 |
| SinI | GGWCC | 4 cut(s) | 989, 1315, 1491, 2110 |
| SmaI | CCCGGG | 1 cut(s) | 2567 |
| SpeI | ACTAGT | 1 cut(s) | 70 |
| SphI | GCATGC | 1 cut(s) | 1216 |
| Sse9I | AATT | 2 cut(s) | 1333, 2489 |
| SspDI | GGCGCC | 2 cut(s) | 1513, 2342 |
| SspI | AATATT | 1 cut(s) | 843 |
| SspMI | CTAG | 7 cut(s) | 71, 105, 167, 284, 596, 950, 2189 |
| StyI | CCWWGG | 2 cut(s) | 2079, 2388 |
| TaaI | ACNGT | 5 cut(s) | 136, 475, 787, 997, 1319 |
| TaiI | ACGT | 7 cut(s) | 69, 226, 538, 1035, 1980, 2040, 2678 |
| TaqI | TCGA | 4 cut(s) | 363, 675, 1980, 2366 |
| TaqII | GACCGA | 3 cut(s) | 1006, 1794, 2303 |
| TasI | AATT | 2 cut(s) | 1333, 2489 |
| TatI | WGTACW | 5 cut(s) | 1194, 1350, 1480, 1835, 2271 |
| TfiI | GAWTC | 3 cut(s) | 1114, 1703, 2249 |
| Tru1I | TTAA | 2 cut(s) | 35, 138 |
| Tru9I | TTAA | 2 cut(s) | 35, 138 |
| TscAI | CASTG | 5 cut(s) | 139, 522, 834, 2289, 2652 |
| TseFI | GTSAC | 5 cut(s) | 219, 531, 856, 1463, 1621 |
| Tsp45I | GTSAC | 5 cut(s) | 219, 531, 856, 1463, 1621 |
| TspDTI | ATGAA | 2 cut(s) | 1695, 1755 |
| TspGWI | ACGGA | 3 cut(s) | 1124, 1558, 1592 |
| TspMI | CCCGGG | 1 cut(s) | 2565 |
| TspRI | CASTG | 5 cut(s) | 139, 522, 834, 2289, 2652 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2677 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 195, 936, 2352 |
| VneI | GTGCAC | 2 cut(s) | 518, 830 |
| VpaK11BI | GGWCC | 4 cut(s) | 989, 1315, 1491, 2110 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1904 |
| XapI | RAATTY | 1 cut(s) | 2489 |
| XceI | RCATGY | 4 cut(s) | 937, 1216, 1853, 2098 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1454 |
| XmaI | CCCGGG | 1 cut(s) | 2565 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2145 |
| XspI | CTAG | 7 cut(s) | 71, 105, 167, 284, 596, 950, 2189 |
| ZraI | GACGTC | 1 cut(s) | 1978 |
| ZrmI | AGTACT | 1 cut(s) | 1196 |