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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AccBSI | CCGCTC | 1 cut(s) | 172 |
| AccII | CGCG | 2 cut(s) | 237, 526 |
| AclWI | GGATC | 2 cut(s) | 240, 259 |
| AcoI | YGGCCR | 2 cut(s) | 114, 435 |
| AcuI | CTGAAG | 1 cut(s) | 254 |
| AcyI | GRCGYC | 1 cut(s) | 109 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 171, 228, 274 |
| AgsI | TTSAA | 1 cut(s) | 454 |
| AjnI | CCWGG | 4 cut(s) | 60, 111, 287, 330 |
| AluBI | AGCT | 6 cut(s) | 37, 70, 205, 281, 310, 338 |
| AluI | AGCT | 6 cut(s) | 37, 70, 205, 281, 310, 338 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Alw26I | GTCTC | 1 cut(s) | 202 |
| AlwI | GGATC | 2 cut(s) | 240, 259 |
| Ama87I | CYCGRG | 2 cut(s) | 21, 38 |
| AoxI | GGCC | 6 cut(s) | 55, 114, 402, 423, 435, 500 |
| ApeKI | GCWGC | 4 cut(s) | 11, 134, 226, 281 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 144, 176 |
| AspS9I | GGNCC | 4 cut(s) | 55, 175, 291, 500 |
| AsuC2I | CCSGG | 2 cut(s) | 22, 23 |
| AsuHPI | GGTGA | 2 cut(s) | 154, 313 |
| AvaI | CYCGRG | 2 cut(s) | 21, 38 |
| AvaII | GGWCC | 2 cut(s) | 175, 291 |
| BalI | TGGCCA | 2 cut(s) | 116, 437 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| BauI | CACGAG | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BbvCI | CCTCAGC | 3 cut(s) | 297, 339, 551 |
| BbvI | GCAGC | 3 cut(s) | 146, 213, 268 |
| BccI | CCATC | 1 cut(s) | 511 |
| BciT130I | CCWGG | 4 cut(s) | 62, 113, 289, 332 |
| BcnI | CCSGG | 2 cut(s) | 22, 23 |
| BcoDI | GTCTC | 1 cut(s) | 202 |
| BfaI | CTAG | 3 cut(s) | 179, 206, 311 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 499 |
| Bme1390I | CCNGG | 6 cut(s) | 22, 23, 62, 113, 289, 332 |
| Bme18I | GGWCC | 2 cut(s) | 175, 291 |
| BmeT110I | CYCGRG | 2 cut(s) | 21, 38 |
| BmgT120I | GGNCC | 4 cut(s) | 55, 175, 291, 500 |
| BmiI | GGNNCC | 3 cut(s) | 176, 539, 558 |
| BmrFI | CCNGG | 6 cut(s) | 22, 23, 62, 113, 289, 332 |
| BmsI | GCATC | 3 cut(s) | 121, 130, 494 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| Bpu10I | CCTNAGC | 4 cut(s) | 81, 297, 339, 551 |
| BpuMI | CCSGG | 2 cut(s) | 22, 23 |
| Bsa29I | ATCGAT | 1 cut(s) | 471 |
| BsaHI | GRCGYC | 1 cut(s) | 109 |
| BsaJI | CCNNGG | 5 cut(s) | 21, 61, 331, 411, 432 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 171, 228, 274 |
| Bse1I | ACTGG | 2 cut(s) | 96, 426 |
| BseBI | CCWGG | 4 cut(s) | 62, 113, 289, 332 |
| BseCI | ATCGAT | 1 cut(s) | 471 |
| BseDI | CCNNGG | 5 cut(s) | 21, 61, 331, 411, 432 |
| BseGI | GGATG | 3 cut(s) | 103, 485, 537 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 171, 228, 274 |
| BseMII | CTCAG | 3 cut(s) | 288, 330, 542 |
| BseNI | ACTGG | 2 cut(s) | 96, 426 |
| BseRI | GAGGAG | 1 cut(s) | 59 |
| BseXI | GCAGC | 3 cut(s) | 146, 213, 268 |
| BseYI | CCCAGC | 3 cut(s) | 70, 489, 497 |
| Bsh1236I | CGCG | 2 cut(s) | 237, 526 |
| BshFI | GGCC | 6 cut(s) | 57, 116, 404, 425, 437, 502 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BshVI | ATCGAT | 1 cut(s) | 471 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 2 cut(s) | 21, 38 |
| BsiSI | CCGG | 1 cut(s) | 22 |
| BslFI | GGGAC | 2 cut(s) | 4, 188 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 171, 228, 274 |
| BsmAI | GTCTC | 1 cut(s) | 202 |
| BsmBI | CGTCTC | 1 cut(s) | 202 |
| BsmFI | GGGAC | 2 cut(s) | 4, 188 |
| BsnI | GGCC | 6 cut(s) | 57, 116, 404, 425, 437, 502 |
| BsoBI | CYCGRG | 2 cut(s) | 21, 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 3 cut(s) | 48, 232, 264 |
| Bsp19I | CCATGG | 1 cut(s) | 432 |
| BspANI | GGCC | 6 cut(s) | 57, 116, 404, 425, 437, 502 |
| BspCNI | CTCAG | 3 cut(s) | 289, 331, 543 |
| BspDI | ATCGAT | 1 cut(s) | 471 |
| BspFNI | CGCG | 2 cut(s) | 237, 526 |
| BspLI | GGNNCC | 3 cut(s) | 176, 539, 558 |
| BspPI | GGATC | 2 cut(s) | 240, 259 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BsrBI | CCGCTC | 1 cut(s) | 172 |
| BsrI | ACTGG | 2 cut(s) | 96, 426 |
| BssECI | CCNNGG | 5 cut(s) | 21, 61, 331, 411, 432 |
| BssMI | GATC | 3 cut(s) | 48, 232, 264 |
| BssNI | GRCGYC | 1 cut(s) | 109 |
| BssSI | CACGAG | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 1 cut(s) | 432 |
| Bst2BI | CACGAG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 4 cut(s) | 62, 113, 289, 332 |
| Bst4CI | ACNGT | 3 cut(s) | 18, 128, 166 |
| BstACI | GRCGYC | 1 cut(s) | 109 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 3 cut(s) | 495, 524, 561 |
| BstDEI | CTNAG | 6 cut(s) | 81, 246, 297, 339, 551, 564 |
| BstDSI | CCRYGG | 1 cut(s) | 432 |
| BstF5I | GGATG | 3 cut(s) | 103, 485, 537 |
| BstFNI | CGCG | 2 cut(s) | 237, 526 |
| BstKTI | GATC | 3 cut(s) | 51, 235, 267 |
| BstMAI | GTCTC | 1 cut(s) | 202 |
| BstMBI | GATC | 3 cut(s) | 48, 232, 264 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 140, 293, 362, 422, 499, 523, 556 |
| BstNI | CCWGG | 4 cut(s) | 62, 113, 289, 332 |
| BstSCI | CCNGG | 6 cut(s) | 20, 21, 60, 111, 287, 330 |
| BstUI | CGCG | 2 cut(s) | 237, 526 |
| BstV1I | GCAGC | 3 cut(s) | 146, 213, 268 |
| BstX2I | RGATCY | 1 cut(s) | 264 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 433, 497 |
| BstYI | RGATCY | 1 cut(s) | 264 |
| Bsu15I | ATCGAT | 1 cut(s) | 471 |
| BsuRI | GGCC | 6 cut(s) | 57, 116, 404, 425, 437, 502 |
| BsuTUI | ATCGAT | 1 cut(s) | 471 |
| BtgI | CCRYGG | 1 cut(s) | 432 |
| BtsCI | GGATG | 3 cut(s) | 103, 485, 537 |
| BtsIMutI | CAGTG | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 3 cut(s) | 495, 524, 561 |
| Cfr13I | GGNCC | 4 cut(s) | 55, 175, 291, 500 |
| Cfr9I | CCCGGG | 1 cut(s) | 21 |
| ClaI | ATCGAT | 1 cut(s) | 471 |
| CseI | GACGC | 1 cut(s) | 117 |
| CviAII | CATG | 2 cut(s) | 406, 433 |
| DdeI | CTNAG | 6 cut(s) | 81, 246, 297, 339, 551, 564 |
| DpnI | GATC | 3 cut(s) | 50, 234, 266 |
| DpnII | GATC | 3 cut(s) | 48, 232, 264 |
| EaeI | YGGCCR | 2 cut(s) | 114, 435 |
| EciI | GGCGGA | 2 cut(s) | 110, 404 |
| Ecl136II | GAGCTC | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 1 cut(s) | 432 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco47I | GGWCC | 2 cut(s) | 175, 291 |
| Eco53kI | GAGCTC | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 254 |
| Eco88I | CYCGRG | 2 cut(s) | 21, 38 |
| EcoICRI | GAGCTC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 2 cut(s) | 55, 175 |
| EcoRII | CCWGG | 4 cut(s) | 60, 111, 287, 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 432 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 432 |
| Esp3I | CGTCTC | 1 cut(s) | 202 |
| FaeI | CATG | 2 cut(s) | 409, 436 |
| FaiI | YATR | 3 cut(s) | 218, 407, 434 |
| FaqI | GGGAC | 2 cut(s) | 4, 188 |
| FatI | CATG | 2 cut(s) | 405, 432 |
| FauI | CCCGC | 5 cut(s) | 165, 222, 267, 502, 531 |
| FokI | GGATG | 3 cut(s) | 110, 472, 544 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| FspBI | CTAG | 3 cut(s) | 179, 206, 311 |
| GsaI | CCCAGC | 3 cut(s) | 74, 493, 501 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HaeIII | GGCC | 6 cut(s) | 57, 116, 404, 425, 437, 502 |
| HapII | CCGG | 1 cut(s) | 22 |
| HgaI | GACGC | 1 cut(s) | 117 |
| Hin1I | GRCGYC | 1 cut(s) | 109 |
| Hin1II | CATG | 2 cut(s) | 409, 436 |
| HinfI | GANTC | 1 cut(s) | 454 |
| HpaII | CCGG | 1 cut(s) | 22 |
| HphI | GGTGA | 2 cut(s) | 154, 313 |
| Hpy188I | TCNGA | 1 cut(s) | 459 |
| Hpy99I | CGWCG | 1 cut(s) | 111 |
| HpyAV | CCTTC | 3 cut(s) | 278, 394, 415 |
| HpyCH4III | ACNGT | 3 cut(s) | 18, 128, 166 |
| HpyCH4IV | ACGT | 1 cut(s) | 349 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 134, 517 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 140, 293, 362, 422, 499, 523, 556 |
| HpyF3I | CTNAG | 6 cut(s) | 81, 246, 297, 339, 551, 564 |
| HpySE526I | ACGT | 1 cut(s) | 349 |
| Hsp92I | GRCGYC | 1 cut(s) | 109 |
| Hsp92II | CATG | 2 cut(s) | 409, 436 |
| Kzo9I | GATC | 3 cut(s) | 48, 232, 264 |
| LmnI | GCTCC | 4 cut(s) | 34, 67, 103, 335 |
| Lsp1109I | GCAGC | 3 cut(s) | 146, 213, 268 |
| LweI | GCATC | 3 cut(s) | 121, 130, 494 |
| MaeI | CTAG | 3 cut(s) | 179, 206, 311 |
| MaeII | ACGT | 1 cut(s) | 349 |
| MaeIII | GTNAC | 2 cut(s) | 160, 322 |
| MalI | GATC | 3 cut(s) | 50, 234, 266 |
| MbiI | CCGCTC | 1 cut(s) | 172 |
| MboI | GATC | 3 cut(s) | 48, 232, 264 |
| MboII | GAAGA | 1 cut(s) | 316 |
| MfeI | CAATTG | 1 cut(s) | 383 |
| MflI | RGATCY | 1 cut(s) | 264 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MlsI | TGGCCA | 2 cut(s) | 116, 437 |
| MluCI | AATT | 3 cut(s) | 152, 383, 446 |
| MluNI | TGGCCA | 2 cut(s) | 116, 437 |
| Mox20I | TGGCCA | 2 cut(s) | 116, 437 |
| MscI | TGGCCA | 2 cut(s) | 116, 437 |
| MseI | TTAA | 1 cut(s) | 378 |
| Msp20I | TGGCCA | 2 cut(s) | 116, 437 |
| MspA1I | CMGCKG | 3 cut(s) | 274, 296, 497 |
| MspI | CCGG | 1 cut(s) | 22 |
| MspR9I | CCNGG | 6 cut(s) | 22, 23, 62, 113, 289, 332 |
| MunI | CAATTG | 1 cut(s) | 383 |
| MvaI | CCWGG | 4 cut(s) | 62, 113, 289, 332 |
| MvnI | CGCG | 2 cut(s) | 237, 526 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 140, 293, 362, 422, 499, 523, 556 |
| NciI | CCSGG | 2 cut(s) | 22, 23 |
| NcoI | CCATGG | 1 cut(s) | 432 |
| NdeII | GATC | 3 cut(s) | 48, 232, 264 |
| NlaIII | CATG | 2 cut(s) | 409, 436 |
| NlaIV | GGNNCC | 3 cut(s) | 176, 539, 558 |
| NmuCI | GTSAC | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 454 |
| PflFI | GACNNNGTC | 1 cut(s) | 194 |
| PpuMI | RGGWCCY | 1 cut(s) | 175 |
| Psp124BI | GAGCTC | 1 cut(s) | 39 |
| Psp5II | RGGWCCY | 1 cut(s) | 175 |
| Psp6I | CCWGG | 4 cut(s) | 60, 111, 287, 330 |
| PspFI | CCCAGC | 3 cut(s) | 70, 489, 497 |
| PspGI | CCWGG | 4 cut(s) | 60, 111, 287, 330 |
| PspN4I | GGNNCC | 3 cut(s) | 176, 539, 558 |
| PspPI | GGNCC | 4 cut(s) | 55, 175, 291, 500 |
| PspPPI | RGGWCCY | 1 cut(s) | 175 |
| PsuI | RGATCY | 1 cut(s) | 264 |
| PsyI | GACNNNGTC | 1 cut(s) | 194 |
| SacI | GAGCTC | 1 cut(s) | 39 |
| SaqAI | TTAA | 1 cut(s) | 378 |
| Sau3AI | GATC | 3 cut(s) | 48, 232, 264 |
| Sau96I | GGNCC | 4 cut(s) | 55, 175, 291, 500 |
| ScrFI | CCNGG | 6 cut(s) | 22, 23, 62, 113, 289, 332 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SfaNI | GCATC | 3 cut(s) | 121, 130, 494 |
| SinI | GGWCC | 2 cut(s) | 175, 291 |
| SmaI | CCCGGG | 1 cut(s) | 23 |
| Sse9I | AATT | 3 cut(s) | 152, 383, 446 |
| SspMI | CTAG | 3 cut(s) | 179, 206, 311 |
| SstI | GAGCTC | 1 cut(s) | 39 |
| StyD4I | CCNGG | 6 cut(s) | 20, 21, 60, 111, 287, 330 |
| StyI | CCWWGG | 1 cut(s) | 432 |
| TaaI | ACNGT | 3 cut(s) | 18, 128, 166 |
| TaiI | ACGT | 1 cut(s) | 352 |
| TaqI | TCGA | 1 cut(s) | 471 |
| TaqII | GACCGA | 2 cut(s) | 425, 496 |
| TasI | AATT | 3 cut(s) | 152, 383, 446 |
| TauI | GCSGC | 7 cut(s) | 8, 11, 287, 356, 359, 419, 550 |
| TfiI | GAWTC | 1 cut(s) | 454 |
| Tru1I | TTAA | 1 cut(s) | 378 |
| Tru9I | TTAA | 1 cut(s) | 378 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 1 cut(s) | 160 |
| TseI | GCWGC | 4 cut(s) | 11, 134, 226, 281 |
| Tsp45I | GTSAC | 1 cut(s) | 160 |
| TspMI | CCCGGG | 1 cut(s) | 21 |
| TspRI | CASTG | 1 cut(s) | 433 |
| Tth111I | GACNNNGTC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 2 cut(s) | 175, 291 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 439 |
| XmaI | CCCGGG | 1 cut(s) | 21 |
| XspI | CTAG | 3 cut(s) | 179, 206, 311 |