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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 40, 270 |
| AccB1I | GGYRCC | 3 cut(s) | 40, 270, 366 |
| AccBSI | CCGCTC | 5 cut(s) | 166, 193, 331, 364, 442 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccII | CGCG | 1 cut(s) | 405 |
| AcsI | RAATTY | 1 cut(s) | 146 |
| AfaI | GTAC | 2 cut(s) | 42, 272 |
| AfeI | AGCGCT | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 429 |
| AjiI | CACGTC | 2 cut(s) | 436, 454 |
| AjnI | CCWGG | 2 cut(s) | 69, 320 |
| AluBI | AGCT | 3 cut(s) | 258, 337, 412 |
| AluI | AGCT | 3 cut(s) | 258, 337, 412 |
| Aor51HI | AGCGCT | 1 cut(s) | 9 |
| AoxI | GGCC | 1 cut(s) | 261 |
| ApeKI | GCWGC | 3 cut(s) | 20, 55, 316 |
| ApoI | RAATTY | 1 cut(s) | 146 |
| Asp718I | GGTACC | 2 cut(s) | 40, 270 |
| AspLEI | GCGC | 2 cut(s) | 10, 228 |
| AsuHPI | GGTGA | 1 cut(s) | 223 |
| BanI | GGYRCC | 3 cut(s) | 40, 270, 366 |
| BbvI | GCAGC | 3 cut(s) | 32, 67, 328 |
| BceAI | ACGGC | 1 cut(s) | 407 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BciT130I | CCWGG | 2 cut(s) | 71, 322 |
| BclI | TGATCA | 1 cut(s) | 241 |
| BfmI | CTRYAG | 1 cut(s) | 253 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BisI | GCNGC | 8 cut(s) | 21, 56, 90, 194, 317, 365, 393, 406 |
| BlsI | GCNGC | 8 cut(s) | 22, 57, 91, 195, 318, 366, 394, 407 |
| Bme1390I | CCNGG | 2 cut(s) | 71, 322 |
| BmgBI | CACGTC | 2 cut(s) | 436, 454 |
| BmiI | GGNNCC | 4 cut(s) | 42, 159, 272, 368 |
| BmrFI | CCNGG | 2 cut(s) | 71, 322 |
| BmsI | GCATC | 4 cut(s) | 76, 346, 379, 388 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 29 |
| Bpu10I | CCTNAGC | 2 cut(s) | 162, 338 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 4 cut(s) | 320, 321, 375, 403 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 429 |
| BseBI | CCWGG | 2 cut(s) | 71, 322 |
| BseDI | CCNNGG | 4 cut(s) | 320, 321, 375, 403 |
| BseGI | GGATG | 3 cut(s) | 88, 117, 361 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 429 |
| BseMII | CTCAG | 2 cut(s) | 153, 352 |
| BseXI | GCAGC | 3 cut(s) | 32, 67, 328 |
| BseYI | CCCAGC | 1 cut(s) | 196 |
| Bsh1236I | CGCG | 1 cut(s) | 405 |
| BshFI | GGCC | 1 cut(s) | 263 |
| BshNI | GGYRCC | 3 cut(s) | 40, 270, 366 |
| BsiSI | CCGG | 1 cut(s) | 459 |
| BslFI | GGGAC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 429 |
| BsmFI | GGGAC | 1 cut(s) | 446 |
| BsnI | GGCC | 1 cut(s) | 263 |
| Bsp143I | GATC | 2 cut(s) | 241, 348 |
| BspANI | GGCC | 1 cut(s) | 263 |
| BspCNI | CTCAG | 2 cut(s) | 154, 351 |
| BspFNI | CGCG | 1 cut(s) | 405 |
| BspLI | GGNNCC | 4 cut(s) | 42, 159, 272, 368 |
| BspT107I | GGYRCC | 3 cut(s) | 40, 270, 366 |
| BsrBI | CCGCTC | 5 cut(s) | 166, 193, 331, 364, 442 |
| BssECI | CCNNGG | 4 cut(s) | 320, 321, 375, 403 |
| BssMI | GATC | 2 cut(s) | 241, 348 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 2 cut(s) | 71, 322 |
| BstC8I | GCNNGC | 3 cut(s) | 191, 403, 410 |
| BstDEI | CTNAG | 2 cut(s) | 162, 338 |
| BstDSI | CCRYGG | 1 cut(s) | 403 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 374 |
| BstF5I | GGATG | 3 cut(s) | 88, 117, 361 |
| BstFNI | CGCG | 1 cut(s) | 405 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 2 cut(s) | 10, 228 |
| BstKTI | GATC | 2 cut(s) | 244, 351 |
| BstMBI | GATC | 2 cut(s) | 241, 348 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 52, 140, 398 |
| BstNI | CCWGG | 2 cut(s) | 71, 322 |
| BstSCI | CCNGG | 2 cut(s) | 69, 320 |
| BstSFI | CTRYAG | 1 cut(s) | 253 |
| BstUI | CGCG | 1 cut(s) | 405 |
| BstV1I | GCAGC | 3 cut(s) | 32, 67, 328 |
| BsuRI | GGCC | 1 cut(s) | 263 |
| BtgI | CCRYGG | 1 cut(s) | 403 |
| BtrI | CACGTC | 2 cut(s) | 436, 454 |
| BtsCI | GGATG | 3 cut(s) | 88, 117, 361 |
| Cac8I | GCNNGC | 3 cut(s) | 191, 403, 410 |
| CfoI | GCGC | 2 cut(s) | 10, 228 |
| Cfr42I | CCGCGG | 1 cut(s) | 406 |
| CsiI | ACCWGGT | 1 cut(s) | 69 |
| Csp6I | GTAC | 2 cut(s) | 41, 271 |
| CviJI | RGCY | 9 cut(s) | 92, 160, 196, 258, 263, 286, 319, 337, 412 |
| CviKI_1 | RGCY | 9 cut(s) | 92, 160, 196, 258, 263, 286, 319, 337, 412 |
| CviQI | GTAC | 2 cut(s) | 41, 271 |
| DdeI | CTNAG | 2 cut(s) | 162, 338 |
| DpnI | GATC | 2 cut(s) | 243, 350 |
| DpnII | GATC | 2 cut(s) | 241, 348 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco47III | AGCGCT | 1 cut(s) | 9 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 374 |
| EcoRI | GAATTC | 1 cut(s) | 146 |
| EcoRII | CCWGG | 2 cut(s) | 69, 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaiI | YATR | 2 cut(s) | 139, 141 |
| FaqI | GGGAC | 1 cut(s) | 446 |
| FauI | CCCGC | 2 cut(s) | 159, 410 |
| FauNDI | CATATG | 1 cut(s) | 139 |
| FbaI | TGATCA | 1 cut(s) | 241 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 8 cut(s) | 21, 56, 90, 194, 317, 365, 393, 406 |
| FokI | GGATG | 3 cut(s) | 95, 124, 368 |
| Fsp4HI | GCNGC | 8 cut(s) | 21, 56, 90, 194, 317, 365, 393, 406 |
| GlaI | GCGC | 2 cut(s) | 9, 227 |
| GluI | GCNGC | 8 cut(s) | 21, 56, 90, 194, 317, 365, 393, 406 |
| GsaI | CCCAGC | 1 cut(s) | 200 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 1 cut(s) | 263 |
| HapII | CCGG | 1 cut(s) | 459 |
| HhaI | GCGC | 2 cut(s) | 10, 228 |
| Hin6I | GCGC | 2 cut(s) | 8, 226 |
| HinP1I | GCGC | 2 cut(s) | 8, 226 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HinfI | GANTC | 2 cut(s) | 125, 219 |
| HpaII | CCGG | 1 cut(s) | 459 |
| HphI | GGTGA | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 100 |
| Hpy188I | TCNGA | 1 cut(s) | 206 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 100 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 80 |
| HpyAV | CCTTC | 2 cut(s) | 208, 274 |
| HpyCH4IV | ACGT | 2 cut(s) | 435, 453 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 52, 140, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 162, 338 |
| HpySE526I | ACGT | 2 cut(s) | 435, 453 |
| HspAI | GCGC | 2 cut(s) | 8, 226 |
| KpnI | GGTACC | 2 cut(s) | 44, 274 |
| Ksp22I | TGATCA | 1 cut(s) | 241 |
| KspI | CCGCGG | 1 cut(s) | 406 |
| Kzo9I | GATC | 2 cut(s) | 241, 348 |
| LmnI | GCTCC | 6 cut(s) | 5, 15, 157, 328, 361, 439 |
| LpnPI | CCDG | 9 cut(s) | 56, 83, 164, 174, 182, 307, 325, 334, 383 |
| Lsp1109I | GCAGC | 3 cut(s) | 32, 67, 328 |
| LweI | GCATC | 4 cut(s) | 76, 346, 379, 388 |
| MabI | ACCWGGT | 1 cut(s) | 69 |
| MaeII | ACGT | 2 cut(s) | 435, 453 |
| MaeIII | GTNAC | 2 cut(s) | 28, 116 |
| MalI | GATC | 2 cut(s) | 243, 350 |
| MbiI | CCGCTC | 5 cut(s) | 166, 193, 331, 364, 442 |
| MboI | GATC | 2 cut(s) | 241, 348 |
| MboII | GAAGA | 1 cut(s) | 169 |
| MluCI | AATT | 1 cut(s) | 146 |
| MlyI | GAGTC | 1 cut(s) | 119 |
| MnlI | CCTC | 6 cut(s) | 23, 73, 145, 194, 200, 421 |
| MseI | TTAA | 1 cut(s) | 311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| MspA1I | CMGCKG | 2 cut(s) | 395, 405 |
| MspI | CCGG | 1 cut(s) | 459 |
| MspR9I | CCNGG | 2 cut(s) | 71, 322 |
| MvaI | CCWGG | 2 cut(s) | 71, 322 |
| MvnI | CGCG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 52, 140, 398 |
| NdeI | CATATG | 1 cut(s) | 139 |
| NdeII | GATC | 2 cut(s) | 241, 348 |
| NlaIV | GGNNCC | 4 cut(s) | 42, 159, 272, 368 |
| NmeAIII | GCCGAG | 1 cut(s) | 239 |
| NmuCI | GTSAC | 2 cut(s) | 28, 116 |
| PasI | CCCWGGG | 1 cut(s) | 321 |
| PfeI | GAWTC | 1 cut(s) | 219 |
| PflFI | GACNNNGTC | 1 cut(s) | 452 |
| PkrI | GCNGC | 8 cut(s) | 22, 57, 91, 195, 318, 366, 394, 407 |
| PleI | GAGTC | 1 cut(s) | 119 |
| PpsI | GAGTC | 1 cut(s) | 119 |
| Psp6I | CCWGG | 2 cut(s) | 69, 320 |
| PspFI | CCCAGC | 1 cut(s) | 196 |
| PspGI | CCWGG | 2 cut(s) | 69, 320 |
| PspN4I | GGNNCC | 4 cut(s) | 42, 159, 272, 368 |
| PsyI | GACNNNGTC | 1 cut(s) | 452 |
| RsaI | GTAC | 2 cut(s) | 42, 272 |
| RsaNI | GTAC | 2 cut(s) | 41, 271 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SacII | CCGCGG | 1 cut(s) | 406 |
| SalI | GTCGAC | 1 cut(s) | 74 |
| SaqAI | TTAA | 1 cut(s) | 311 |
| SatI | GCNGC | 8 cut(s) | 21, 56, 90, 194, 317, 365, 393, 406 |
| Sau3AI | GATC | 2 cut(s) | 241, 348 |
| SchI | GAGTC | 1 cut(s) | 119 |
| ScrFI | CCNGG | 2 cut(s) | 71, 322 |
| SexAI | ACCWGGT | 1 cut(s) | 69 |
| SfaNI | GCATC | 4 cut(s) | 76, 346, 379, 388 |
| SfcI | CTRYAG | 1 cut(s) | 253 |
| Sfr303I | CCGCGG | 1 cut(s) | 406 |
| SgrBI | CCGCGG | 1 cut(s) | 406 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| Sse9I | AATT | 1 cut(s) | 146 |
| StyD4I | CCNGG | 2 cut(s) | 69, 320 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaiI | ACGT | 2 cut(s) | 438, 456 |
| TaqI | TCGA | 1 cut(s) | 75 |
| TasI | AATT | 1 cut(s) | 146 |
| TauI | GCSGC | 5 cut(s) | 92, 196, 367, 395, 408 |
| TfiI | GAWTC | 1 cut(s) | 219 |
| Tru1I | TTAA | 1 cut(s) | 311 |
| Tru9I | TTAA | 1 cut(s) | 311 |
| TseFI | GTSAC | 2 cut(s) | 28, 116 |
| TseI | GCWGC | 3 cut(s) | 20, 55, 316 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 116 |
| TspGWI | ACGGA | 2 cut(s) | 170, 268 |
| Tth111I | GACNNNGTC | 1 cut(s) | 452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 374 |
| XapI | RAATTY | 1 cut(s) | 146 |
| XmiI | GTMKAC | 1 cut(s) | 75 |