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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 234 |
| Acc65I | GGTACC | 1 cut(s) | 299 |
| AccB1I | GGYRCC | 3 cut(s) | 299, 926, 962 |
| AccBSI | CCGCTC | 3 cut(s) | 55, 457, 622 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AccII | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| AccIII | TCCGGA | 1 cut(s) | 651 |
| AclWI | GGATC | 1 cut(s) | 183 |
| AcoI | YGGCCR | 1 cut(s) | 525 |
| AcsI | RAATTY | 2 cut(s) | 186, 437 |
| AcuI | CTGAAG | 1 cut(s) | 752 |
| AcyI | GRCGYC | 1 cut(s) | 963 |
| AfaI | GTAC | 2 cut(s) | 301, 893 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 59, 407, 457, 613, 709, 772, 853, 910 |
| AgeI | ACCGGT | 1 cut(s) | 59 |
| AgsI | TTSAA | 4 cut(s) | 603, 644, 877, 952 |
| AjnI | CCWGG | 2 cut(s) | 261, 591 |
| AluBI | AGCT | 4 cut(s) | 586, 736, 758, 799 |
| AluI | AGCT | 4 cut(s) | 586, 736, 758, 799 |
| Alw26I | GTCTC | 2 cut(s) | 653, 683 |
| AlwI | GGATC | 1 cut(s) | 183 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 703 |
| Ama87I | CYCGRG | 2 cut(s) | 452, 488 |
| Aor13HI | TCCGGA | 1 cut(s) | 651 |
| AoxI | GGCC | 3 cut(s) | 168, 259, 525 |
| ApeKI | GCWGC | 5 cut(s) | 577, 724, 733, 857, 932 |
| ApoI | RAATTY | 2 cut(s) | 186, 437 |
| AsiGI | ACCGGT | 1 cut(s) | 59 |
| Asp718I | GGTACC | 1 cut(s) | 299 |
| AspLEI | GCGC | 4 cut(s) | 98, 235, 314, 965 |
| AspS9I | GGNCC | 1 cut(s) | 510 |
| AsuC2I | CCSGG | 1 cut(s) | 887 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 385 |
| AsuII | TTCGAA | 1 cut(s) | 495 |
| AvaI | CYCGRG | 2 cut(s) | 452, 488 |
| AvaII | GGWCC | 1 cut(s) | 510 |
| AxyI | CCTNAGG | 1 cut(s) | 612 |
| BanI | GGYRCC | 3 cut(s) | 299, 926, 962 |
| BauI | CACGAG | 1 cut(s) | 581 |
| BbsI | GAAGAC | 1 cut(s) | 771 |
| BbvCI | CCTCAGC | 2 cut(s) | 281, 320 |
| BbvI | GCAGC | 5 cut(s) | 564, 711, 745, 844, 919 |
| BccI | CCATC | 3 cut(s) | 251, 335, 500 |
| BceAI | ACGGC | 4 cut(s) | 196, 512, 526, 540 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 469, 503 |
| BciT130I | CCWGG | 2 cut(s) | 263, 593 |
| BcnI | CCSGG | 1 cut(s) | 887 |
| BcoDI | GTCTC | 2 cut(s) | 653, 683 |
| BfaI | CTAG | 1 cut(s) | 413 |
| BfmI | CTRYAG | 1 cut(s) | 83 |
| BfoI | RGCGCY | 2 cut(s) | 315, 966 |
| Bme1390I | CCNGG | 3 cut(s) | 263, 593, 887 |
| Bme18I | GGWCC | 1 cut(s) | 510 |
| BmeT110I | CYCGRG | 2 cut(s) | 452, 488 |
| BmgT120I | GGNCC | 1 cut(s) | 510 |
| BmiI | GGNNCC | 5 cut(s) | 301, 511, 845, 928, 964 |
| BmrFI | CCNGG | 3 cut(s) | 263, 593, 887 |
| BmsI | GCATC | 2 cut(s) | 571, 634 |
| BpiI | GAAGAC | 1 cut(s) | 771 |
| BpmI | CTGGAG | 1 cut(s) | 284 |
| Bpu10I | CCTNAGC | 2 cut(s) | 281, 320 |
| Bpu14I | TTCGAA | 1 cut(s) | 495 |
| BpuMI | CCSGG | 1 cut(s) | 887 |
| BsaHI | GRCGYC | 1 cut(s) | 963 |
| BsaI | GGTCTC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 6 cut(s) | 100, 171, 212, 390, 708, 885 |
| BsaWI | WCCGGW | 2 cut(s) | 59, 651 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 59, 407, 457, 613, 709, 772, 853, 910 |
| Bse118I | RCCGGY | 1 cut(s) | 59 |
| Bse1I | ACTGG | 1 cut(s) | 830 |
| Bse21I | CCTNAGG | 1 cut(s) | 612 |
| BseAI | TCCGGA | 1 cut(s) | 651 |
| BseBI | CCWGG | 2 cut(s) | 263, 593 |
| BseDI | CCNNGG | 6 cut(s) | 100, 171, 212, 390, 708, 885 |
| BseGI | GGATG | 2 cut(s) | 370, 511 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 59, 407, 457, 613, 709, 772, 853, 910 |
| BseMII | CTCAG | 5 cut(s) | 272, 311, 620, 626, 783 |
| BseNI | ACTGG | 1 cut(s) | 830 |
| BseRI | GAGGAG | 3 cut(s) | 281, 650, 809 |
| BseX3I | CGGCCG | 1 cut(s) | 525 |
| BseXI | GCAGC | 5 cut(s) | 564, 711, 745, 844, 919 |
| BseYI | CCCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 1 cut(s) | 563 |
| Bsh1236I | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| Bsh1285I | CGRYCG | 2 cut(s) | 387, 528 |
| BshFI | GGCC | 3 cut(s) | 170, 261, 527 |
| BshNI | GGYRCC | 3 cut(s) | 299, 926, 962 |
| BshTI | ACCGGT | 1 cut(s) | 59 |
| BsiEI | CGRYCG | 2 cut(s) | 387, 528 |
| BsiHKCI | CYCGRG | 2 cut(s) | 452, 488 |
| BsiSI | CCGG | 3 cut(s) | 60, 652, 887 |
| BslFI | GGGAC | 2 cut(s) | 523, 868 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 59, 407, 457, 613, 709, 772, 853, 910 |
| BsmAI | GTCTC | 2 cut(s) | 653, 683 |
| BsmFI | GGGAC | 2 cut(s) | 523, 868 |
| BsnI | GGCC | 3 cut(s) | 170, 261, 527 |
| Bso31I | GGTCTC | 1 cut(s) | 683 |
| BsoBI | CYCGRG | 2 cut(s) | 452, 488 |
| Bsp119I | TTCGAA | 1 cut(s) | 495 |
| Bsp13I | TCCGGA | 1 cut(s) | 651 |
| Bsp1407I | TGTACA | 1 cut(s) | 891 |
| Bsp143I | GATC | 2 cut(s) | 175, 221 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspANI | GGCC | 3 cut(s) | 170, 261, 527 |
| BspCNI | CTCAG | 5 cut(s) | 273, 312, 621, 625, 784 |
| BspEI | TCCGGA | 1 cut(s) | 651 |
| BspFNI | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| BspLI | GGNNCC | 5 cut(s) | 301, 511, 845, 928, 964 |
| BspPI | GGATC | 1 cut(s) | 183 |
| BspT104I | TTCGAA | 1 cut(s) | 495 |
| BspT107I | GGYRCC | 3 cut(s) | 299, 926, 962 |
| BspTNI | GGTCTC | 1 cut(s) | 683 |
| BsrBI | CCGCTC | 3 cut(s) | 55, 457, 622 |
| BsrFI | RCCGGY | 1 cut(s) | 59 |
| BsrGI | TGTACA | 1 cut(s) | 891 |
| BsrI | ACTGG | 1 cut(s) | 830 |
| BssAI | RCCGGY | 1 cut(s) | 59 |
| BssECI | CCNNGG | 6 cut(s) | 100, 171, 212, 390, 708, 885 |
| BssMI | GATC | 2 cut(s) | 175, 221 |
| BssNI | GRCGYC | 1 cut(s) | 963 |
| BssSI | CACGAG | 1 cut(s) | 581 |
| BssT1I | CCWWGG | 3 cut(s) | 100, 171, 708 |
| Bst2BI | CACGAG | 1 cut(s) | 581 |
| Bst2UI | CCWGG | 2 cut(s) | 263, 593 |
| Bst4CI | ACNGT | 3 cut(s) | 87, 379, 865 |
| Bst6I | CTCTTC | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 963 |
| BstAUI | TGTACA | 1 cut(s) | 891 |
| BstBI | TTCGAA | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 8 cut(s) | 23, 53, 209, 482, 608, 738, 756, 900 |
| BstDEI | CTNAG | 6 cut(s) | 281, 320, 612, 629, 750, 792 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 212 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 707, 908 |
| BstF5I | GGATG | 2 cut(s) | 370, 511 |
| BstFNI | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| BstH2I | RGCGCY | 2 cut(s) | 315, 966 |
| BstHHI | GCGC | 4 cut(s) | 98, 235, 314, 965 |
| BstKTI | GATC | 2 cut(s) | 178, 224 |
| BstMAI | GTCTC | 2 cut(s) | 653, 683 |
| BstMBI | GATC | 2 cut(s) | 175, 221 |
| BstMCI | CGRYCG | 2 cut(s) | 387, 528 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 277, 311, 325, 431, 583, 730, 733, 929 |
| BstNI | CCWGG | 2 cut(s) | 263, 593 |
| BstNSI | RCATGY | 1 cut(s) | 211 |
| BstSCI | CCNGG | 3 cut(s) | 261, 591, 885 |
| BstSFI | CTRYAG | 1 cut(s) | 83 |
| BstUI | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| BstV1I | GCAGC | 5 cut(s) | 564, 711, 745, 844, 919 |
| BstV2I | GAAGAC | 1 cut(s) | 771 |
| BstZI | CGGCCG | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 1 cut(s) | 612 |
| BsuRI | GGCC | 3 cut(s) | 170, 261, 527 |
| BtgI | CCRYGG | 2 cut(s) | 171, 212 |
| BtsCI | GGATG | 2 cut(s) | 370, 511 |
| BtsI | GCAGTG | 1 cut(s) | 704 |
| BtsIMutI | CAGTG | 2 cut(s) | 704, 861 |
| Cac8I | GCNNGC | 8 cut(s) | 23, 53, 209, 482, 608, 738, 756, 900 |
| CaiI | CAGNNNCTG | 1 cut(s) | 703 |
| CfoI | GCGC | 4 cut(s) | 98, 235, 314, 965 |
| Cfr10I | RCCGGY | 1 cut(s) | 59 |
| Cfr13I | GGNCC | 1 cut(s) | 510 |
| Csp6I | GTAC | 2 cut(s) | 300, 892 |
| CspAI | ACCGGT | 1 cut(s) | 59 |
| CviAII | CATG | 2 cut(s) | 172, 208 |
| CviQI | GTAC | 2 cut(s) | 300, 892 |
| DdeI | CTNAG | 6 cut(s) | 281, 320, 612, 629, 750, 792 |
| DinI | GGCGCC | 1 cut(s) | 964 |
| DpnI | GATC | 2 cut(s) | 177, 223 |
| DpnII | GATC | 2 cut(s) | 175, 221 |
| EaeI | YGGCCR | 1 cut(s) | 525 |
| EagI | CGGCCG | 1 cut(s) | 525 |
| Eam1104I | CTCTTC | 1 cut(s) | 473 |
| EarI | CTCTTC | 1 cut(s) | 473 |
| EciI | GGCGGA | 1 cut(s) | 377 |
| EclXI | CGGCCG | 1 cut(s) | 525 |
| Eco130I | CCWWGG | 3 cut(s) | 100, 171, 708 |
| Eco31I | GGTCTC | 1 cut(s) | 683 |
| Eco32I | GATATC | 1 cut(s) | 763 |
| Eco47I | GGWCC | 1 cut(s) | 510 |
| Eco52I | CGGCCG | 1 cut(s) | 525 |
| Eco57I | CTGAAG | 1 cut(s) | 752 |
| Eco81I | CCTNAGG | 1 cut(s) | 612 |
| Eco88I | CYCGRG | 2 cut(s) | 452, 488 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 707, 908 |
| EcoO109I | RGGNCCY | 1 cut(s) | 510 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 2 cut(s) | 261, 591 |
| EcoRV | GATATC | 1 cut(s) | 763 |
| EcoT14I | CCWWGG | 3 cut(s) | 100, 171, 708 |
| EgeI | GGCGCC | 1 cut(s) | 964 |
| EheI | GGCGCC | 1 cut(s) | 964 |
| ErhI | CCWWGG | 3 cut(s) | 100, 171, 708 |
| FaeI | CATG | 2 cut(s) | 175, 211 |
| FaiI | YATR | 5 cut(s) | 33, 173, 209, 317, 432 |
| FaqI | GGGAC | 2 cut(s) | 523, 868 |
| FatI | CATG | 2 cut(s) | 171, 207 |
| FauI | CCCGC | 4 cut(s) | 60, 285, 450, 765 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| FokI | GGATG | 2 cut(s) | 377, 518 |
| FspBI | CTAG | 1 cut(s) | 413 |
| FspI | TGCGCA | 1 cut(s) | 234 |
| GlaI | GCGC | 4 cut(s) | 97, 234, 313, 964 |
| GsaI | CCCAGC | 1 cut(s) | 137 |
| GsuI | CTGGAG | 1 cut(s) | 284 |
| HaeII | RGCGCY | 2 cut(s) | 315, 966 |
| HaeIII | GGCC | 3 cut(s) | 170, 261, 527 |
| HapII | CCGG | 3 cut(s) | 60, 652, 887 |
| HhaI | GCGC | 4 cut(s) | 98, 235, 314, 965 |
| Hin1I | GRCGYC | 1 cut(s) | 963 |
| Hin1II | CATG | 2 cut(s) | 175, 211 |
| Hin6I | GCGC | 4 cut(s) | 96, 233, 312, 963 |
| HinP1I | GCGC | 4 cut(s) | 96, 233, 312, 963 |
| HincII | GTYRAC | 2 cut(s) | 79, 90 |
| HindII | GTYRAC | 2 cut(s) | 79, 90 |
| HinfI | GANTC | 6 cut(s) | 28, 91, 416, 716, 776, 869 |
| HpaII | CCGG | 3 cut(s) | 60, 652, 887 |
| HphI | GGTGA | 2 cut(s) | 49, 385 |
| Hpy166II | GTNNAC | 4 cut(s) | 79, 90, 823, 892 |
| Hpy188I | TCNGA | 3 cut(s) | 192, 630, 793 |
| Hpy188III | TCNNGA | 4 cut(s) | 442, 520, 652, 941 |
| Hpy8I | GTNNAC | 4 cut(s) | 79, 90, 823, 892 |
| Hpy99I | CGWCG | 2 cut(s) | 158, 526 |
| HpyAV | CCTTC | 4 cut(s) | 56, 491, 776, 913 |
| HpyCH4III | ACNGT | 3 cut(s) | 87, 379, 865 |
| HpyCH4V | TGCA | 3 cut(s) | 21, 480, 580 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 277, 311, 325, 431, 583, 730, 733, 929 |
| HpyF3I | CTNAG | 6 cut(s) | 281, 320, 612, 629, 750, 792 |
| Hsp92I | GRCGYC | 1 cut(s) | 963 |
| Hsp92II | CATG | 2 cut(s) | 175, 211 |
| HspAI | GCGC | 4 cut(s) | 96, 233, 312, 963 |
| KasI | GGCGCC | 1 cut(s) | 962 |
| Kpn2I | TCCGGA | 1 cut(s) | 651 |
| KpnI | GGTACC | 1 cut(s) | 303 |
| Kzo9I | GATC | 2 cut(s) | 175, 221 |
| LmnI | GCTCC | 2 cut(s) | 268, 796 |
| Lsp1109I | GCAGC | 5 cut(s) | 564, 711, 745, 844, 919 |
| LweI | GCATC | 2 cut(s) | 571, 634 |
| MaeI | CTAG | 1 cut(s) | 413 |
| MaeIII | GTNAC | 2 cut(s) | 137, 373 |
| MalI | GATC | 2 cut(s) | 177, 223 |
| MbiI | CCGCTC | 3 cut(s) | 55, 457, 622 |
| MboI | GATC | 2 cut(s) | 175, 221 |
| MboII | GAAGA | 3 cut(s) | 460, 771, 845 |
| MluCI | AATT | 3 cut(s) | 186, 437, 806 |
| Mly113I | GGCGCC | 1 cut(s) | 963 |
| MlyI | GAGTC | 4 cut(s) | 85, 410, 785, 878 |
| MroI | TCCGGA | 1 cut(s) | 651 |
| MseI | TTAA | 1 cut(s) | 12 |
| MspA1I | CMGCKG | 5 cut(s) | 133, 280, 736, 772, 932 |
| MspI | CCGG | 3 cut(s) | 60, 652, 887 |
| MspR9I | CCNGG | 3 cut(s) | 263, 593, 887 |
| MvaI | CCWGG | 2 cut(s) | 263, 593 |
| MvnI | CGCG | 4 cut(s) | 96, 153, 785, 849 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 277, 311, 325, 431, 583, 730, 733, 929 |
| NarI | GGCGCC | 1 cut(s) | 963 |
| NciI | CCSGG | 1 cut(s) | 887 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 2 cut(s) | 175, 221 |
| NlaIII | CATG | 2 cut(s) | 175, 211 |
| NlaIV | GGNNCC | 5 cut(s) | 301, 511, 845, 928, 964 |
| NmeAIII | GCCGAG | 1 cut(s) | 415 |
| NmuCI | GTSAC | 1 cut(s) | 373 |
| NsbI | TGCGCA | 1 cut(s) | 234 |
| NspI | RCATGY | 1 cut(s) | 211 |
| NspV | TTCGAA | 1 cut(s) | 495 |
| PaeI | GCATGC | 1 cut(s) | 211 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 28, 716 |
| PinAI | ACCGGT | 1 cut(s) | 59 |
| PleI | GAGTC | 4 cut(s) | 85, 410, 784, 877 |
| PluTI | GGCGCC | 1 cut(s) | 966 |
| PpsI | GAGTC | 4 cut(s) | 85, 410, 784, 877 |
| PpuMI | RGGWCCY | 1 cut(s) | 510 |
| Psp5II | RGGWCCY | 1 cut(s) | 510 |
| Psp6I | CCWGG | 2 cut(s) | 261, 591 |
| PspFI | CCCAGC | 1 cut(s) | 133 |
| PspGI | CCWGG | 2 cut(s) | 261, 591 |
| PspN4I | GGNNCC | 5 cut(s) | 301, 511, 845, 928, 964 |
| PspPI | GGNCC | 1 cut(s) | 510 |
| PspPPI | RGGWCCY | 1 cut(s) | 510 |
| PstNI | CAGNNNCTG | 1 cut(s) | 703 |
| PvuII | CAGCTG | 1 cut(s) | 736 |
| RsaI | GTAC | 2 cut(s) | 301, 893 |
| RsaNI | GTAC | 2 cut(s) | 300, 892 |
| SalI | GTCGAC | 1 cut(s) | 77 |
| SaqAI | TTAA | 1 cut(s) | 12 |
| Sau3AI | GATC | 2 cut(s) | 175, 221 |
| Sau96I | GGNCC | 1 cut(s) | 510 |
| SchI | GAGTC | 4 cut(s) | 85, 410, 785, 878 |
| ScrFI | CCNGG | 3 cut(s) | 263, 593, 887 |
| SfaNI | GCATC | 2 cut(s) | 571, 634 |
| SfcI | CTRYAG | 1 cut(s) | 83 |
| SfoI | GGCGCC | 1 cut(s) | 964 |
| SfuI | TTCGAA | 1 cut(s) | 495 |
| SinI | GGWCC | 1 cut(s) | 510 |
| SphI | GCATGC | 1 cut(s) | 211 |
| Sse9I | AATT | 3 cut(s) | 186, 437, 806 |
| SspDI | GGCGCC | 1 cut(s) | 962 |
| SspMI | CTAG | 1 cut(s) | 413 |
| StyD4I | CCNGG | 3 cut(s) | 261, 591, 885 |
| StyI | CCWWGG | 3 cut(s) | 100, 171, 708 |
| TaaI | ACNGT | 3 cut(s) | 87, 379, 865 |
| TaqI | TCGA | 5 cut(s) | 78, 178, 224, 495, 521 |
| TasI | AATT | 3 cut(s) | 186, 437, 806 |
| TatI | WGTACW | 1 cut(s) | 891 |
| TauI | GCSGC | 6 cut(s) | 153, 331, 487, 625, 743, 932 |
| TfiI | GAWTC | 2 cut(s) | 28, 716 |
| Tru1I | TTAA | 1 cut(s) | 12 |
| Tru9I | TTAA | 1 cut(s) | 12 |
| TscAI | CASTG | 2 cut(s) | 704, 868 |
| TseFI | GTSAC | 1 cut(s) | 373 |
| TseI | GCWGC | 5 cut(s) | 577, 724, 733, 857, 932 |
| Tsp45I | GTSAC | 1 cut(s) | 373 |
| TspGWI | ACGGA | 1 cut(s) | 559 |
| TspRI | CASTG | 2 cut(s) | 704, 868 |
| VpaK11BI | GGWCC | 1 cut(s) | 510 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 707, 908 |
| XapI | RAATTY | 2 cut(s) | 186, 437 |
| XceI | RCATGY | 1 cut(s) | 211 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 1 cut(s) | 413 |