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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 741, 1749 |
| Acc36I | ACCTGC | 1 cut(s) | 764 |
| AccB1I | GGYRCC | 1 cut(s) | 1660 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 463, 577 |
| AccBSI | CCGCTC | 4 cut(s) | 1075, 1150, 1228, 1392 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AccII | CGCG | 3 cut(s) | 237, 920, 1781 |
| AcoI | YGGCCR | 3 cut(s) | 168, 1287, 1712 |
| AcsI | RAATTY | 1 cut(s) | 459 |
| AcuI | CTGAAG | 3 cut(s) | 66, 1298, 1545 |
| AcyI | GRCGYC | 2 cut(s) | 1509, 1529 |
| AfaI | GTAC | 1 cut(s) | 859 |
| AfeI | AGCGCT | 1 cut(s) | 262 |
| AflIII | ACRYGT | 1 cut(s) | 507 |
| AgsI | TTSAA | 5 cut(s) | 370, 614, 680, 1400, 1423 |
| AjnI | CCWGG | 6 cut(s) | 158, 358, 720, 1567, 1594, 1682 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 3 cut(s) | 284, 857, 1684 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1789 |
| Ama87I | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| Aor51HI | AGCGCT | 1 cut(s) | 262 |
| AoxI | GGCC | 8 cut(s) | 168, 905, 1005, 1287, 1467, 1630, 1686, 1712 |
| ApoI | RAATTY | 1 cut(s) | 459 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 473, 497 |
| AspLEI | GCGC | 9 cut(s) | 237, 263, 546, 742, 773, 1605, 1750, 1781, 1783 |
| AspS9I | GGNCC | 8 cut(s) | 563, 776, 906, 1536, 1578, 1631, 1686, 1722 |
| AsuC2I | CCSGG | 3 cut(s) | 1534, 1634, 1711 |
| AsuHPI | GGTGA | 8 cut(s) | 478, 592, 613, 707, 857, 1357, 1474, 1814 |
| AsuII | TTCGAA | 1 cut(s) | 1055 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 1541 |
| AvaI | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| AvaII | GGWCC | 5 cut(s) | 563, 776, 1536, 1578, 1722 |
| AxyI | CCTNAGG | 1 cut(s) | 1065 |
| BaeGI | GKGCMC | 2 cut(s) | 1665, 1711 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BanI | GGYRCC | 1 cut(s) | 1660 |
| BanII | GRGCYC | 3 cut(s) | 200, 1705, 1742 |
| BauI | CACGAG | 2 cut(s) | 1188, 1704 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BbvCI | CCTCAGC | 1 cut(s) | 1797 |
| BceAI | ACGGC | 5 cut(s) | 302, 413, 784, 836, 979 |
| BciT130I | CCWGG | 6 cut(s) | 160, 360, 722, 1569, 1596, 1684 |
| BcnI | CCSGG | 3 cut(s) | 1534, 1634, 1711 |
| BcoDI | GTCTC | 3 cut(s) | 284, 857, 1684 |
| BfaI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1542 |
| BfmI | CTRYAG | 5 cut(s) | 105, 146, 380, 983, 1326 |
| BfoI | RGCGCY | 2 cut(s) | 264, 547 |
| BfuAI | ACCTGC | 1 cut(s) | 764 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 418 |
| BglII | AGATCT | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 9 cut(s) | 160, 360, 722, 1534, 1569, 1596, 1634, 1684, 1711 |
| Bme18I | GGWCC | 5 cut(s) | 563, 776, 1536, 1578, 1722 |
| BmeT110I | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| BmgT120I | GGNCC | 8 cut(s) | 563, 776, 906, 1536, 1578, 1631, 1686, 1722 |
| BmrFI | CCNGG | 9 cut(s) | 160, 360, 722, 1534, 1569, 1596, 1634, 1684, 1711 |
| BmrI | ACTGGG | 3 cut(s) | 614, 1528, 1642 |
| BmsI | GCATC | 7 cut(s) | 18, 624, 820, 1111, 1165, 1174, 1804 |
| BmtI | GCTAGC | 2 cut(s) | 9, 1545 |
| BmuI | ACTGGG | 3 cut(s) | 614, 1528, 1642 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 709, 741 |
| BpmI | CTGGAG | 5 cut(s) | 381, 705, 1235, 1397, 1666 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1797 |
| Bpu14I | TTCGAA | 1 cut(s) | 1055 |
| BpuEI | CTTGAG | 3 cut(s) | 43, 1110, 1244 |
| BpuMI | CCSGG | 3 cut(s) | 1534, 1634, 1711 |
| BsaBI | GATNNNNATC | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 2 cut(s) | 1509, 1529 |
| BsaI | GGTCTC | 2 cut(s) | 857, 1684 |
| BsaWI | WCCGGW | 2 cut(s) | 551, 1607 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 296, 326 |
| Bse118I | RCCGGY | 3 cut(s) | 710, 1469, 1792 |
| Bse21I | CCTNAGG | 1 cut(s) | 1065 |
| Bse3DI | GCAATG | 1 cut(s) | 794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 527 |
| BseBI | CCWGG | 6 cut(s) | 160, 360, 722, 1569, 1596, 1684 |
| BseGI | GGATG | 6 cut(s) | 964, 1126, 1189, 1287, 1420, 1551 |
| BseJI | GATNNNNATC | 1 cut(s) | 527 |
| BseMI | GCAATG | 1 cut(s) | 794 |
| BseMII | CTCAG | 2 cut(s) | 1056, 1788 |
| BsePI | GCGCGC | 1 cut(s) | 1779 |
| BseRI | GAGGAG | 5 cut(s) | 317, 854, 947, 1103, 1402 |
| BseSI | GKGCMC | 2 cut(s) | 1665, 1711 |
| BseX3I | CGGCCG | 1 cut(s) | 1712 |
| BseYI | CCCAGC | 3 cut(s) | 779, 940, 1668 |
| Bsh1236I | CGCG | 3 cut(s) | 237, 920, 1781 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1715 |
| BshFI | GGCC | 8 cut(s) | 170, 907, 1007, 1289, 1469, 1632, 1688, 1714 |
| BshNI | GGYRCC | 1 cut(s) | 1660 |
| BsiEI | CGRYCG | 1 cut(s) | 1715 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| BslFI | GGGAC | 2 cut(s) | 762, 1735 |
| BsmAI | GTCTC | 3 cut(s) | 284, 857, 1684 |
| BsmFI | GGGAC | 2 cut(s) | 762, 1735 |
| BsmI | GAATGC | 1 cut(s) | 1175 |
| BsnI | GGCC | 8 cut(s) | 170, 907, 1007, 1289, 1469, 1632, 1688, 1714 |
| Bso31I | GGTCTC | 2 cut(s) | 857, 1684 |
| BsoBI | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| Bsp119I | TTCGAA | 1 cut(s) | 1055 |
| Bsp1286I | GDGCHC | 5 cut(s) | 200, 1665, 1705, 1711, 1742 |
| Bsp143I | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspANI | GGCC | 8 cut(s) | 170, 907, 1007, 1289, 1469, 1632, 1688, 1714 |
| BspCNI | CTCAG | 2 cut(s) | 1057, 1789 |
| BspFNI | CGCG | 3 cut(s) | 237, 920, 1781 |
| BspHI | TCATGA | 1 cut(s) | 1728 |
| BspMAI | CTGCAG | 2 cut(s) | 109, 384 |
| BspMI | ACCTGC | 1 cut(s) | 764 |
| BspOI | GCTAGC | 2 cut(s) | 9, 1545 |
| BspQI | GCTCTTC | 1 cut(s) | 1046 |
| BspT104I | TTCGAA | 1 cut(s) | 1055 |
| BspT107I | GGYRCC | 1 cut(s) | 1660 |
| BspTNI | GGTCTC | 2 cut(s) | 857, 1684 |
| BsrBI | CCGCTC | 4 cut(s) | 1075, 1150, 1228, 1392 |
| BsrDI | GCAATG | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 3 cut(s) | 710, 1469, 1792 |
| BssAI | RCCGGY | 3 cut(s) | 710, 1469, 1792 |
| BssHII | GCGCGC | 1 cut(s) | 1779 |
| BssMI | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| BssNI | GRCGYC | 2 cut(s) | 1509, 1529 |
| BssSI | CACGAG | 2 cut(s) | 1188, 1704 |
| BssT1I | CCWWGG | 4 cut(s) | 171, 1161, 1179, 1290 |
| Bst2BI | CACGAG | 2 cut(s) | 1188, 1704 |
| Bst2UI | CCWGG | 6 cut(s) | 160, 360, 722, 1569, 1596, 1684 |
| Bst4CI | ACNGT | 5 cut(s) | 120, 577, 665, 913, 979 |
| Bst6I | CTCTTC | 3 cut(s) | 234, 1046, 1343 |
| BstACI | GRCGYC | 2 cut(s) | 1509, 1529 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1789 |
| BstBI | TTCGAA | 1 cut(s) | 1055 |
| BstDEI | CTNAG | 2 cut(s) | 1065, 1797 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 918 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 740 |
| BstF5I | GGATG | 6 cut(s) | 964, 1126, 1189, 1287, 1420, 1551 |
| BstFNI | CGCG | 3 cut(s) | 237, 920, 1781 |
| BstH2I | RGCGCY | 2 cut(s) | 264, 547 |
| BstHHI | GCGC | 9 cut(s) | 237, 263, 546, 742, 773, 1605, 1750, 1781, 1783 |
| BstKTI | GATC | 5 cut(s) | 21, 309, 401, 531, 1237 |
| BstMAI | GTCTC | 3 cut(s) | 284, 857, 1684 |
| BstMBI | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| BstMCI | CGRYCG | 1 cut(s) | 1715 |
| BstNI | CCWGG | 6 cut(s) | 160, 360, 722, 1569, 1596, 1684 |
| BstNSI | RCATGY | 2 cut(s) | 425, 511 |
| BstSCI | CCNGG | 9 cut(s) | 158, 358, 720, 1532, 1567, 1594, 1632, 1682, 1709 |
| BstSFI | CTRYAG | 5 cut(s) | 105, 146, 380, 983, 1326 |
| BstSLI | GKGCMC | 2 cut(s) | 1665, 1711 |
| BstUI | CGCG | 3 cut(s) | 237, 920, 1781 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1696 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| BstZI | CGGCCG | 1 cut(s) | 1712 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1065 |
| BsuRI | GGCC | 8 cut(s) | 170, 907, 1007, 1289, 1469, 1632, 1688, 1714 |
| BtgI | CCRYGG | 2 cut(s) | 171, 918 |
| BtgZI | GCGATG | 2 cut(s) | 1188, 1638 |
| BtsCI | GGATG | 6 cut(s) | 964, 1126, 1189, 1287, 1420, 1551 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 411, 627, 852, 909, 1655 |
| BveI | ACCTGC | 1 cut(s) | 764 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1789 |
| CciI | TCATGA | 1 cut(s) | 1728 |
| CfoI | GCGC | 9 cut(s) | 237, 263, 546, 742, 773, 1605, 1750, 1781, 1783 |
| Cfr10I | RCCGGY | 3 cut(s) | 710, 1469, 1792 |
| Cfr13I | GGNCC | 8 cut(s) | 563, 776, 906, 1536, 1578, 1631, 1686, 1722 |
| Cfr42I | CCGCGG | 1 cut(s) | 921 |
| CseI | GACGC | 4 cut(s) | 80, 365, 1498, 1518 |
| Csp6I | GTAC | 1 cut(s) | 858 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 576, 611 |
| CviAII | CATG | 8 cut(s) | 172, 188, 422, 434, 508, 1729, 1751, 1774 |
| CviQI | GTAC | 1 cut(s) | 858 |
| DdeI | CTNAG | 2 cut(s) | 1065, 1797 |
| DpnI | GATC | 5 cut(s) | 20, 308, 400, 530, 1236 |
| DpnII | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| EaeI | YGGCCR | 3 cut(s) | 168, 1287, 1712 |
| EagI | CGGCCG | 1 cut(s) | 1712 |
| Eam1104I | CTCTTC | 3 cut(s) | 234, 1046, 1343 |
| EarI | CTCTTC | 3 cut(s) | 234, 1046, 1343 |
| EciI | GGCGGA | 3 cut(s) | 1133, 1154, 1652 |
| Ecl136II | GAGCTC | 1 cut(s) | 198 |
| EclXI | CGGCCG | 1 cut(s) | 1712 |
| Eco130I | CCWWGG | 4 cut(s) | 171, 1161, 1179, 1290 |
| Eco24I | GRGCYC | 3 cut(s) | 200, 1705, 1742 |
| Eco31I | GGTCTC | 2 cut(s) | 857, 1684 |
| Eco47I | GGWCC | 5 cut(s) | 563, 776, 1536, 1578, 1722 |
| Eco47III | AGCGCT | 1 cut(s) | 262 |
| Eco52I | CGGCCG | 1 cut(s) | 1712 |
| Eco53kI | GAGCTC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 3 cut(s) | 66, 1298, 1545 |
| Eco81I | CCTNAGG | 1 cut(s) | 1065 |
| Eco88I | CYCGRG | 3 cut(s) | 342, 1673, 1735 |
| EcoICRI | GAGCTC | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 740 |
| EcoO109I | RGGNCCY | 2 cut(s) | 776, 1578 |
| EcoRII | CCWGG | 6 cut(s) | 158, 358, 720, 1567, 1594, 1682 |
| EcoT14I | CCWWGG | 4 cut(s) | 171, 1161, 1179, 1290 |
| EcoT38I | GRGCYC | 3 cut(s) | 200, 1705, 1742 |
| ErhI | CCWWGG | 4 cut(s) | 171, 1161, 1179, 1290 |
| FaeI | CATG | 8 cut(s) | 175, 191, 425, 437, 511, 1732, 1754, 1777 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1028, 1060 |
| FaqI | GGGAC | 2 cut(s) | 762, 1735 |
| FatI | CATG | 8 cut(s) | 171, 187, 421, 433, 507, 1728, 1750, 1773 |
| FauI | CCCGC | 4 cut(s) | 290, 409, 792, 1568 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| FokI | GGATG | 6 cut(s) | 971, 1133, 1196, 1294, 1427, 1538 |
| FriOI | GRGCYC | 3 cut(s) | 200, 1705, 1742 |
| FspBI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1542 |
| FspI | TGCGCA | 2 cut(s) | 741, 1749 |
| GlaI | GCGC | 9 cut(s) | 236, 262, 545, 741, 772, 1604, 1749, 1780, 1782 |
| GsaI | CCCAGC | 3 cut(s) | 783, 944, 1672 |
| GsuI | CTGGAG | 5 cut(s) | 381, 705, 1235, 1397, 1666 |
| HaeII | RGCGCY | 2 cut(s) | 264, 547 |
| HaeIII | GGCC | 8 cut(s) | 170, 907, 1007, 1289, 1469, 1632, 1688, 1714 |
| HgaI | GACGC | 4 cut(s) | 80, 365, 1498, 1518 |
| HhaI | GCGC | 9 cut(s) | 237, 263, 546, 742, 773, 1605, 1750, 1781, 1783 |
| Hin1I | GRCGYC | 2 cut(s) | 1509, 1529 |
| Hin1II | CATG | 8 cut(s) | 175, 191, 425, 437, 511, 1732, 1754, 1777 |
| Hin6I | GCGC | 9 cut(s) | 235, 261, 544, 740, 771, 1603, 1748, 1779, 1781 |
| HinP1I | GCGC | 9 cut(s) | 235, 261, 544, 740, 771, 1603, 1748, 1779, 1781 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HindIII | AAGCTT | 1 cut(s) | 1446 |
| HinfI | GANTC | 7 cut(s) | 35, 83, 311, 363, 583, 945, 1322 |
| HphI | GGTGA | 8 cut(s) | 478, 592, 613, 707, 857, 1357, 1474, 1814 |
| Hpy166II | GTNNAC | 5 cut(s) | 99, 331, 339, 469, 1653 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 729, 1317, 1497, 1764 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 367, 1729 |
| Hpy8I | GTNNAC | 5 cut(s) | 99, 331, 339, 469, 1653 |
| Hpy99I | CGWCG | 2 cut(s) | 665, 1343 |
| HpyAV | CCTTC | 5 cut(s) | 382, 883, 1459, 1519, 1569 |
| HpyCH4III | ACNGT | 5 cut(s) | 120, 577, 665, 913, 979 |
| HpyCH4IV | ACGT | 1 cut(s) | 593 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 191, 382, 433, 558, 808, 1033, 1084 |
| HpyF3I | CTNAG | 2 cut(s) | 1065, 1797 |
| HpySE526I | ACGT | 1 cut(s) | 593 |
| Hsp92I | GRCGYC | 2 cut(s) | 1509, 1529 |
| Hsp92II | CATG | 8 cut(s) | 175, 191, 425, 437, 511, 1732, 1754, 1777 |
| HspAI | GCGC | 9 cut(s) | 235, 261, 544, 740, 771, 1603, 1748, 1779, 1781 |
| KroI | GCCGGC | 1 cut(s) | 1792 |
| KroNI | GCCGGC | 1 cut(s) | 1794 |
| KspI | CCGCGG | 1 cut(s) | 921 |
| Kzo9I | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| LguI | GCTCTTC | 1 cut(s) | 1046 |
| LmnI | GCTCC | 8 cut(s) | 686, 717, 730, 1147, 1254, 1389, 1610, 1760 |
| LweI | GCATC | 7 cut(s) | 18, 624, 820, 1111, 1165, 1174, 1804 |
| MaeI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1542 |
| MaeII | ACGT | 1 cut(s) | 593 |
| MaeIII | GTNAC | 2 cut(s) | 789, 913 |
| MalI | GATC | 5 cut(s) | 20, 308, 400, 530, 1236 |
| MbiI | CCGCTC | 4 cut(s) | 1075, 1150, 1228, 1392 |
| MboI | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| MboII | GAAGA | 6 cut(s) | 224, 251, 898, 1033, 1304, 1360 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MhlI | GDGCHC | 5 cut(s) | 200, 1665, 1705, 1711, 1742 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluCI | AATT | 5 cut(s) | 459, 953, 1112, 1203, 1822 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MlyI | GAGTC | 3 cut(s) | 320, 372, 1316 |
| MmeI | TCCRAC | 3 cut(s) | 590, 752, 1579 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| MroNI | GCCGGC | 1 cut(s) | 1792 |
| MroXI | GAANNNNTTC | 2 cut(s) | 473, 497 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| MseI | TTAA | 1 cut(s) | 1296 |
| MslI | CAYNNNNRTG | 1 cut(s) | 654 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 6 cut(s) | 221, 416, 920, 1156, 1279, 1375 |
| MspR9I | CCNGG | 9 cut(s) | 160, 360, 722, 1534, 1569, 1596, 1634, 1684, 1711 |
| Mva1269I | GAATGC | 1 cut(s) | 1175 |
| MvaI | CCWGG | 6 cut(s) | 160, 360, 722, 1569, 1596, 1684 |
| MvnI | CGCG | 3 cut(s) | 237, 920, 1781 |
| NaeI | GCCGGC | 1 cut(s) | 1794 |
| NciI | CCSGG | 3 cut(s) | 1534, 1634, 1711 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| NgoMIV | GCCGGC | 1 cut(s) | 1792 |
| NheI | GCTAGC | 2 cut(s) | 5, 1541 |
| NlaIII | CATG | 8 cut(s) | 175, 191, 425, 437, 511, 1732, 1754, 1777 |
| NmeAIII | GCCGAG | 2 cut(s) | 883, 983 |
| NmuCI | GTSAC | 1 cut(s) | 913 |
| NsbI | TGCGCA | 2 cut(s) | 741, 1749 |
| NspI | RCATGY | 2 cut(s) | 425, 511 |
| NspV | TTCGAA | 1 cut(s) | 1055 |
| PaeI | GCATGC | 1 cut(s) | 425 |
| PagI | TCATGA | 1 cut(s) | 1728 |
| PasI | CCCWGGG | 2 cut(s) | 159, 1568 |
| PauI | GCGCGC | 1 cut(s) | 1779 |
| PciI | ACATGT | 1 cut(s) | 507 |
| PciSI | GCTCTTC | 1 cut(s) | 1046 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 315 |
| PctI | GAATGC | 1 cut(s) | 1175 |
| PdiI | GCCGGC | 1 cut(s) | 1794 |
| PdmI | GAANNNNTTC | 2 cut(s) | 473, 497 |
| PfeI | GAWTC | 4 cut(s) | 35, 83, 583, 945 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 463, 577 |
| PleI | GAGTC | 3 cut(s) | 319, 371, 1316 |
| PpsI | GAGTC | 3 cut(s) | 319, 371, 1316 |
| PpuMI | RGGWCCY | 2 cut(s) | 776, 1578 |
| PscI | ACATGT | 1 cut(s) | 507 |
| Psp124BI | GAGCTC | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 2 cut(s) | 776, 1578 |
| Psp6I | CCWGG | 6 cut(s) | 158, 358, 720, 1567, 1594, 1682 |
| PspFI | CCCAGC | 3 cut(s) | 779, 940, 1668 |
| PspGI | CCWGG | 6 cut(s) | 158, 358, 720, 1567, 1594, 1682 |
| PspPI | GGNCC | 8 cut(s) | 563, 776, 906, 1536, 1578, 1631, 1686, 1722 |
| PspPPI | RGGWCCY | 2 cut(s) | 776, 1578 |
| PstI | CTGCAG | 2 cut(s) | 109, 384 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1789 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| PteI | GCGCGC | 1 cut(s) | 1779 |
| PvuII | CAGCTG | 3 cut(s) | 221, 1156, 1375 |
| RsaI | GTAC | 1 cut(s) | 859 |
| RsaNI | GTAC | 1 cut(s) | 858 |
| RseI | CAYNNNNRTG | 1 cut(s) | 654 |
| SacI | GAGCTC | 1 cut(s) | 200 |
| SacII | CCGCGG | 1 cut(s) | 921 |
| SapI | GCTCTTC | 1 cut(s) | 1046 |
| SaqAI | TTAA | 1 cut(s) | 1296 |
| Sau3AI | GATC | 5 cut(s) | 18, 306, 398, 528, 1234 |
| Sau96I | GGNCC | 8 cut(s) | 563, 776, 906, 1536, 1578, 1631, 1686, 1722 |
| SchI | GAGTC | 3 cut(s) | 320, 372, 1316 |
| ScrFI | CCNGG | 9 cut(s) | 160, 360, 722, 1534, 1569, 1596, 1634, 1684, 1711 |
| SduI | GDGCHC | 5 cut(s) | 200, 1665, 1705, 1711, 1742 |
| SfaNI | GCATC | 7 cut(s) | 18, 624, 820, 1111, 1165, 1174, 1804 |
| SfcI | CTRYAG | 5 cut(s) | 105, 146, 380, 983, 1326 |
| Sfr303I | CCGCGG | 1 cut(s) | 921 |
| SfuI | TTCGAA | 1 cut(s) | 1055 |
| SgrBI | CCGCGG | 1 cut(s) | 921 |
| SinI | GGWCC | 5 cut(s) | 563, 776, 1536, 1578, 1722 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 654 |
| SmlI | CTYRAG | 3 cut(s) | 22, 1125, 1223 |
| SmoI | CTYRAG | 3 cut(s) | 22, 1125, 1223 |
| SphI | GCATGC | 1 cut(s) | 425 |
| Sse9I | AATT | 5 cut(s) | 459, 953, 1112, 1203, 1822 |
| SspMI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1542 |
| SstI | GAGCTC | 1 cut(s) | 200 |
| StyD4I | CCNGG | 9 cut(s) | 158, 358, 720, 1532, 1567, 1594, 1632, 1682, 1709 |
| StyI | CCWWGG | 4 cut(s) | 171, 1161, 1179, 1290 |
| TaaI | ACNGT | 5 cut(s) | 120, 577, 665, 913, 979 |
| TaiI | ACGT | 1 cut(s) | 596 |
| TaqI | TCGA | 7 cut(s) | 138, 309, 352, 1055, 1071, 1212, 1341 |
| TaqII | GACCGA | 1 cut(s) | 173 |
| TasI | AATT | 5 cut(s) | 459, 953, 1112, 1203, 1822 |
| TfiI | GAWTC | 4 cut(s) | 35, 83, 583, 945 |
| Tru1I | TTAA | 1 cut(s) | 1296 |
| Tru9I | TTAA | 1 cut(s) | 1296 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 411, 627, 859, 916, 1655 |
| TseFI | GTSAC | 1 cut(s) | 913 |
| Tsp45I | GTSAC | 1 cut(s) | 913 |
| TspDTI | ATGAA | 1 cut(s) | 401 |
| TspGWI | ACGGA | 4 cut(s) | 84, 875, 1012, 1327 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 411, 627, 859, 916, 1655 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 463, 577 |
| VpaK11BI | GGWCC | 5 cut(s) | 563, 776, 1536, 1578, 1722 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 740 |
| XapI | RAATTY | 1 cut(s) | 459 |
| XceI | RCATGY | 2 cut(s) | 425, 511 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 2 cut(s) | 473, 497 |
| XspI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1542 |